prot_H-paniculata_contig14730.2825.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14730.2825.1
Unique Nameprot_H-paniculata_contig14730.2825.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length315
Homology
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BLAST of mRNA_H-paniculata_contig14730.2825.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 1.280e-111
Identity = 202/338 (59.76%), Postives = 225/338 (66.57%), Query Frame = 0 
Query:    1 MLQCLRESKTVVPDKQSFTLAIQACVWSGNCIKETWSVVEEAERAGV----SFGSKDLLDARLILVQAVGGDLFEGLEDMVNRGVAPDESTLLGVIEACAERGDTAGALQILEMMRAAREGRR--------------GVCPRPSYRSYLAALGACSRAPTSTTAIAADGDNDGDARLEERQRPEVGRERVGDWQASKRVLGMMWEDEAARKAEGKAAVPGVWSPLLQEALSLGPSNVTMPAVPDAVCYQLAMECCVSRGRTDEALSLLSEMEGRGLSPNEAGLCALIKGFA-------AGGGGVGGEGSEEEERWRGIERALGVFEELAERFQPPLRC 313
            MLQ LRES+ V PD+ S+TLAIQACVWSG+ ++E W++VEEAE        SF SKDLLDARL+LVQAVGGD+ +GL++M  RGV  DEST+LGVIEACA+RGD AGAL IL+MMR A                    VCPRPSYRSYLAAL                   DG                 GDW+A+K VL MMWEDEAAR A+G  AVPG WS  LQEALSLGPS+VTMPAVPDA CYQLAMECCVS GR DEAL LLSEMEGRGLSPNEA L ALI+GFA        GGGG   +    E RWRG+E ALGVFEELAERF PP R 
Sbjct:  333 MLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXTTAVCPRPSYRSYLAALXXXXXXXXXXXXXXXXXSGDGVR---------------GDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALGLLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAADRERAERRWRGVENALGVFEELAERFDPPSRA 655
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BLAST of mRNA_H-paniculata_contig14730.2825.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 323 bits (827), Expect = 1.270e-97
Identity = 196/367 (53.41%), Postives = 217/367 (59.13%), Query Frame = 0 
Query:    1 MLQCLRESKTVVPDKQSFTLAIQACVWSGNCIKETWSVVEEAERAGV----SFGSKDLLDARLILVQAVGGDLFEGLEDMVNRGVAPDESTLLGVIEACAERGDTAGALQILEMMRAAREGRR-----------------GVCPRPSYRSYLAALGACSRAPTSTTAIAADGDNDGDARLEERQRPEVGRERVGDWQASKRVLGMMWEDEAARKAE--------------------------GKAAVPGVWSPLLQEALSLGPSNVTMPAVPDAVCYQLAMECCVSRGRTDEALSLLSEMEGRGLSPNEAGLCALIKGFA-------AGGGGVGGEGSEEEERWRGIERALGVFEELAERFQPPLRC 313
            MLQ LRES+ V PD+ S+TLAIQACVWSG+ ++E W++VEEA+ A      SF SKDLLDARL LVQAVGGD+  GL +M  RGV  DEST+LGVIEACA+RGD AGAL IL+MMR A                       VCPRPSYRSYLAA                         +             GDW+A+K VL MMWEDEAAR                             G  A  G WS  LQEAL LGPS+VTMPAVPDA CYQLAMECCVS GR DEAL+LLSEMEGRGLSPNEA L ALI+GFA        GGGG   E    E RWRG+E ALGVFEELAERF PP R 
Sbjct:  488 MLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAAXXXXXXXXXXXXXXXXXXXXXSGDGVR------------GDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECCVSGGRNDEALALLSEMEGRGLSPNEAALRALIRGFALEGVVADGGGGGPAAERERAERRWRGVENALGVFEELAERFDPPSRA 842
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14730.2825.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKT0_ECTSI1.280e-11159.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L195_9PHAE1.270e-9753.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 225..273
e-value: 2.1E-7
score: 31.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 228..262
e-value: 4.2E-7
score: 27.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 73..113
e-value: 0.0067
score: 16.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 84..114
score: 7.07
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 226..260
score: 11.181
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 14..49
score: 7.224
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 73..275

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14730contigH-paniculata_contig14730:2305..6119 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14730.2825.1mRNA_H-paniculata_contig14730.2825.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14730 2281..6119 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14730.2825.1 ID=prot_H-paniculata_contig14730.2825.1|Name=mRNA_H-paniculata_contig14730.2825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=315bp
MLQCLRESKTVVPDKQSFTLAIQACVWSGNCIKETWSVVEEAERAGVSFG
SKDLLDARLILVQAVGGDLFEGLEDMVNRGVAPDESTLLGVIEACAERGD
TAGALQILEMMRAAREGRRGVCPRPSYRSYLAALGACSRAPTSTTAIAAD
GDNDGDARLEERQRPEVGRERVGDWQASKRVLGMMWEDEAARKAEGKAAV
PGVWSPLLQEALSLGPSNVTMPAVPDAVCYQLAMECCVSRGRTDEALSLL
SEMEGRGLSPNEAGLCALIKGFAAGGGGVGGEGSEEEERWRGIERALGVF
EELAERFQPPLRCV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat