mRNA_H-paniculata_contig1472.2820.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1472.2820.1
Unique NamemRNA_H-paniculata_contig1472.2820.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: D7FI10_ECTSI (DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.980e-95
Identity = 166/195 (85.13%), Postives = 180/195 (92.31%), Query Frame = 1 
Query:  169 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAATDMS--AQGHDEEEEDDE---LRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQAR 738
            AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAA DMS  AQG +++ ++D+      GPKLP LP EG+++GVLPRVIRTLVERR+VVKKMLKKE+DPS+KQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDL+E QLGLEVIYGDTDSVMINTHSTDLKQ +
Sbjct:  957 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAACDMSTPAQGGEDDMDEDDGAAASAGPKLPDLPAEGMDIGVLPRVIRTLVERRSVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQVK 1151
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS)

HSP 1 Score: 254 bits (649), Expect = 2.280e-74
Identity = 133/187 (71.12%), Postives = 156/187 (83.42%), Query Frame = 1 
Query:  172 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQ 732
            Y+GGLVLEPKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTM W+ ++  A       E  E+  G +LP LP+EGL+ GVLPRVI+TLV+RR  VKK LK E++  KK+EL+IRQ+ALKLTANSMYGCLGFS SRFYA+PIAALVTA GRE+LQRTVDLA+T +GLEVIYGDTDS+MINT  TD+ +
Sbjct:  501 YSGGLVLEPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMEWSKSNAPANV-----EGGEVPQGDQLPPLPDEGLKRGVLPRVIKTLVDRRRNVKKFLKTEKNAEKKEELNIRQQALKLTANSMYGCLGFSHSRFYAQPIAALVTAMGRETLQRTVDLAQTSIGLEVIYGDTDSIMINTRITDVNE 682
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A482T3C7_9ARCH (DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3C7_9ARCH)

HSP 1 Score: 253 bits (647), Expect = 3.980e-74
Identity = 144/218 (66.06%), Postives = 161/218 (73.85%), Query Frame = 1 
Query:  169 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWA--------------------ATDMSAQGHDEEEE----DDELR----TGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQAR 738
            AYAGGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT++W                     A   +A+  DEEEE    DDE      TG  LP LPE     GVLPRVI+TLV+RR  VK +LK ERDP ++Q LDIRQKALKLTANSMYGCLGFSFSRFYA+PIAALVTA GRE+LQRTVDLA  Q+GL+VIYGDTDSVMINT+  DL+Q +
Sbjct:  725 AYAGGLVLEPKKGLYDTYILLLDFNSLYPSIIQEYNLCFTTVDWTKYMPKEGALANDARGNAKGPAKGKTAKTEDEEEEVEGSDDEAEGDGGTGNNLPPLPESSSTPGVLPRVIKTLVDRRRQVKNLLKNERDPVQRQLLDIRQKALKLTANSMYGCLGFSFSRFYARPIAALVTAMGREALQRTVDLATHQMGLDVIYGDTDSVMINTNLVDLQQVK 942
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A4D9CVK1_9STRA (DNA polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA)

HSP 1 Score: 249 bits (636), Expect = 3.290e-72
Identity = 132/197 (67.01%), Postives = 158/197 (80.20%), Query Frame = 1 
Query:  169 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAA----------TDMSAQGHDEEE------EDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINT 711
            AYAGGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT+NW+A            ++    DE++      ED+    G +LP LP+  L+ G+LPRVI+TLV+RR+ VKK+LK ERD +KK++LDIRQKALKLTANSMYGCLGFS SRF+A+PIAALVTA GRE+LQRTVD+A+ QL L+VIYGDTDS+MINT
Sbjct:  946 AYAGGLVLEPKKGLYDSYILLLDFNSLYPSIIQEYNLCFTTINWSAFARPSSTAGGDPLAKTAGDEDDVGLGADEDEAAAGGAQLPPLPDTALDQGILPRVIKTLVDRRSSVKKLLKAERDAAKKEQLDIRQKALKLTANSMYGCLGFSHSRFFARPIAALVTAMGRETLQRTVDVAQNQLSLDVIYGDTDSIMINT 1142
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S2FD72_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FD72_9STRA)

HSP 1 Score: 233 bits (595), Expect = 7.600e-72
Identity = 125/187 (66.84%), Postives = 149/187 (79.68%), Query Frame = 1 
Query:  172 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQ 732
            YAGGLVLEPKKGLY+ YILLLDF SLYPS+IQEYN+CFTTM WA     +    E+EE+        LP  PE   + GV+P+VIRT++ RR  VK++LK+E D  KKQ+LDIRQKALKLTANS+YGCLGFS SRF+A+PIAALVTA+GR+ LQRTVDLAE  +GLEVIYGDTDS+MI+T  TDLK+
Sbjct:   14 YAGGLVLEPKKGLYETYILLLDFMSLYPSIIQEYNICFTTMEWAKYKTKSTNPAEDEEEAGFDG---LPPDPENIDDKGVVPKVIRTIINRRVQVKQLLKQETDVGKKQQLDIRQKALKLTANSLYGCLGFSSSRFHAQPIAALVTAKGRQILQRTVDLAENNMGLEVIYGDTDSIMIDTKCTDLKE 197
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S2L169_9STRA (DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L169_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.830e-71
Identity = 128/189 (67.72%), Postives = 155/189 (82.01%), Query Frame = 1 
Query:  172 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWA--ATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQ 732
            Y+GGLVLEPKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTM+W+   T  +A+G            G +LP LP+E L+ GVLPRVI+TLV+RR  VK+++K E+D +KK+ELDIRQ ALKLTANSMYGCLGFS SRFYA+PIAAL+TA GRE+LQRTVDL +T +GL+VIYGDTDS+MINT  +D+ +
Sbjct:  914 YSGGLVLEPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMDWSKSVTPNNAEGV--------APQGDQLPPLPDESLDRGVLPRVIKTLVDRRRAVKRLVKTEKDQTKKEELDIRQLALKLTANSMYGCLGFSHSRFYAQPIAALITAMGRETLQRTVDLTQTTIGLDVIYGDTDSIMINTRISDVNE 1094
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: K0T5T4_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5T4_THAOC)

HSP 1 Score: 243 bits (620), Expect = 1.140e-70
Identity = 127/187 (67.91%), Postives = 153/187 (81.82%), Query Frame = 1 
Query:  172 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQ 732
            YAGGLVL+PKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTM+WA         D++  D+      +LP+LP+E L+ GVLPRVI++LVERR  VKK +K E+D  KK+EL+IRQ ALKLTANSMYGCLGF  SRFYA+PIAALVTA GR++LQRTVD+ +T +GL+VIYGDTDS+MINT  TDL++
Sbjct:  368 YAGGLVLDPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMDWAK--------DKDIADEAGAQENQLPSLPDESLDRGVLPRVIKSLVERRRNVKKFMKSEKDADKKEELNIRQLALKLTANSMYGCLGFQNSRFYARPIAALVTAMGRQTLQRTVDITQTTIGLDVIYGDTDSIMINTRITDLEE 546
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S3QD78_9STRA (DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD78_9STRA)

HSP 1 Score: 243 bits (621), Expect = 3.370e-70
Identity = 128/190 (67.37%), Postives = 153/190 (80.53%), Query Frame = 1 
Query:  172 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNW------AATDMSAQGHDEEEEDDELRT----GPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINT 711
            Y+GGLVLEPKKGLYD +ILLLDFNSLYPS+IQEYN+CFTTMNW      A  D ++  + E+ ++D++        KLP +P+E  + GVLPRVI+TLVERR  VKKMLK+E++  KKQE DIRQ ALKLTANSMYGCLGFS SRFYA+PIAAL+TA GRE+LQRTV +AE  +GL+VIYGDTDSVMINT
Sbjct:  919 YSGGLVLEPKKGLYDSFILLLDFNSLYPSIIQEYNMCFTTMNWGDYVYKAGNDATSNSNGEDGDEDQVAEVVSMDDKLPPIPDESTKEGVLPRVIKTLVERRKAVKKMLKQEKNADKKQEFDIRQMALKLTANSMYGCLGFSHSRFYAQPIAALITAMGRETLQRTVSIAEDTVGLDVIYGDTDSVMINT 1108
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S4IIV6_9STRA (DNA polymerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IIV6_9STRA)

HSP 1 Score: 235 bits (600), Expect = 2.200e-67
Identity = 129/199 (64.82%), Postives = 148/199 (74.37%), Query Frame = 1 
Query:  172 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN-WAATDMSAQGHDEEEEDDEL------------------RTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINT 711
            Y+GGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT++ W+     A      +                         G  LP++P+   ++GVLPRVIRTLVERR  VKK+LK ERD  KK+ELDIRQKALKLTANSMYGCLGFSFSRFYA+PIAALVTA GRE+LQ+TVD+AE  +GL+VIYGDTDSVMINT
Sbjct:  776 YSGGLVLEPKKGLYDSYILLLDFNSLYPSIIQEYNLCFTTLDDWSGLQAKALAASTPKGGTPSGXXXXXXXXXXXXVALIENAGDALPSIPDPSKDVGVLPRVIRTLVERRKAVKKLLKNERDADKKEELDIRQKALKLTANSMYGCLGFSFSRFYAQPIAALVTAMGRETLQKTVDIAEKSVGLDVIYGDTDSVMINT 974
[Close]
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S1UP17_9STRA (DNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UP17_9STRA)

HSP 1 Score: 229 bits (585), Expect = 6.450e-67
Identity = 123/185 (66.49%), Postives = 144/185 (77.84%), Query Frame = 1 
Query:  172 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN-WAATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTD 723
            Y+GGLVLEPKKG YD +ILLLDFNSLYPS+IQEYNLCFTTM+ WA        H             +LP LPEE  E GVLPRVI++LV+RR VVK++LK E +  K+Q LDIRQKALKLTANSMYGCLGFS SRFYA+PIAALVTA GRE+LQ++VD+A+  +GL VIYGDTDS+MI+T  TD
Sbjct:  514 YSGGLVLEPKKGYYDSFILLLDFNSLYPSIIQEYNLCFTTMDDWA-------DHANNNAXXXXXXSSELPELPEESKERGVLPRVIKSLVDRRRVVKRLLKNETNDDKRQNLDIRQKALKLTANSMYGCLGFSHSRFYAQPIAALVTAMGRETLQKSVDIAQESVGLSVIYGDTDSIMIDTRITD 691
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI10_ECTSI1.980e-9585.13DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
B8LEG9_THAPS2.280e-7471.12DNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A482T3C7_9ARCH3.980e-7466.06DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepI... [more]
A0A4D9CVK1_9STRA3.290e-7267.01DNA polymerase n=1 Tax=Nannochloropsis salina CCMP... [more]
A0A7S2FD72_9STRA7.600e-7266.84DNA-directed DNA polymerase (Fragment) n=1 Tax=Dic... [more]
A0A7S2L169_9STRA2.830e-7167.72DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=2... [more]
K0T5T4_THAOC1.140e-7067.91DNA polymerase n=1 Tax=Thalassiosira oceanica TaxI... [more]
A0A7S3QD78_9STRA3.370e-7067.37DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=1... [more]
A0A7S4IIV6_9STRA2.200e-6764.82DNA polymerase n=1 Tax=Odontella aurita TaxID=2655... [more]
A0A7S1UP17_9STRA6.450e-6766.49DNA polymerase (Fragment) n=1 Tax=Grammatophora oc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1472contigH-paniculata_contig1472:21968..25691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.5
Seed ortholog evalue2.7e-84
Seed eggNOG ortholog2880.D7FI10
Preferred namePOLA1
KEGG rclassRC02795
KEGG koko:K02320
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0000726,GO:0000731,GO:0000734,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009653,GO:0009889,GO:0009965,GO:0009987,GO:0010016,GO:0010468,GO:0010556,GO:0012505,GO:0016043,GO:0016070,GO:0016363,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0018130,GO:0019103,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022413,GO:0022414,GO:0022616,GO:0030154,GO:0030880,GO:0030894,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0036094,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045165,GO:0046483,GO:0046982,GO:0046983,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097747,GO:0098687,GO:0099402,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903046,GO:1903047,GO:1903506,GO:1905392,GO:1990234,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.leading strand elongation
EggNOG OGsCOG0417@1,KOG0970@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Exons5
Model size739
Cds size738
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1472.2820.1prot_H-paniculata_contig1472.2820.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1472 21968..25691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929171.8780143-CDS-H-paniculata_contig1472:21967..221331622929171.8780143-CDS-H-paniculata_contig1472:21967..22133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 21968..22133 -
1691480759.4076953-CDS-H-paniculata_contig1472:21967..221331691480759.4076953-CDS-H-paniculata_contig1472:21967..22133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 21968..22133 -
1622929171.8935602-CDS-H-paniculata_contig1472:22341..224331622929171.8935602-CDS-H-paniculata_contig1472:22341..22433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 22342..22433 -
1691480759.4190483-CDS-H-paniculata_contig1472:22341..224331691480759.4190483-CDS-H-paniculata_contig1472:22341..22433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 22342..22433 -
1622929171.9082494-CDS-H-paniculata_contig1472:22688..228441622929171.9082494-CDS-H-paniculata_contig1472:22688..22844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 22689..22844 -
1691480759.4276683-CDS-H-paniculata_contig1472:22688..228441691480759.4276683-CDS-H-paniculata_contig1472:22688..22844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 22689..22844 -
1622929171.923436-CDS-H-paniculata_contig1472:23503..237301622929171.923436-CDS-H-paniculata_contig1472:23503..23730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 23504..23730 -
1691480759.4373214-CDS-H-paniculata_contig1472:23503..237301691480759.4373214-CDS-H-paniculata_contig1472:23503..23730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 23504..23730 -
1622929171.9402926-CDS-H-paniculata_contig1472:25594..256911622929171.9402926-CDS-H-paniculata_contig1472:25594..25691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 25595..25691 -
1691480759.4478252-CDS-H-paniculata_contig1472:25594..256911691480759.4478252-CDS-H-paniculata_contig1472:25594..25691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1472 25595..25691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1472.2820.1

>prot_H-paniculata_contig1472.2820.1 ID=prot_H-paniculata_contig1472.2820.1|Name=mRNA_H-paniculata_contig1472.2820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
MVQVTYGSNKEGGGGGKKNNTSSKGGSAGRGDGDDSKVTPATNANNAGGG
ARRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNW
AATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRA
VVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAA
LVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQAR
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mRNA from alignment at H-paniculata_contig1472:21968..25691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1472.2820.1 ID=mRNA_H-paniculata_contig1472.2820.1|Name=mRNA_H-paniculata_contig1472.2820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3724bp|location=Sequence derived from alignment at H-paniculata_contig1472:21968..25691- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAGGTCACTTACGGATCTAACAAGGAAGGAGGAGGCGGGGGCAA
GAAAAACAACACGTCCTCCAAGGGTGGCTCTGCTGGGAGAGGCGACGGTG
CTGTCGGTGTTGGTATTGGCCCTGATGGAGAAGACGACGGTGAGCAATGA
TCGAGCGAGTAAGAACACCTTCACCATCACCTCAAGGATTGAAGCGGGTT
TGGTTGAGCGTTTTGCCACGAATAAGGATGGCTAAGAAAGTTATAGCCAT
GAATCGTTCCGGGGGCGTACATTTTTGTCAATGAAGCTTGGAGTGGTGTC
GGTGACTTCCTGCACGAATTAATGAGCACTTGTCATTAAACTACTCAACT
ATTCTGAAAGTATATGCCGATGATTCAGTCAAATCACTGCCTGTTTTAGA
GGGGACCAATCAATCAATCAACCAACCAAATTGCATATAATTACTCGCGT
CTGCTTTTTCTGTGAGCTTTTCCAGCATACAACGCCAAATTGCACGGGTG
AAAATAAAAGAAAAACATGCCTACCCTACAACAAGCATGTCCCATAAGAC
AGATTTCCCAGTTGCGAGCCCCCCCCCTCCTGCCTAAAAGAGTCATACCC
CTGGGTTATCAAACAGTAACTATTGAAGCAACGATGGTGGATAAATGGCT
TTCAAGATAAATACCCGCCCCCCCCGCTCTCAGTGGGGTGCTCCATCAAG
ATAGGGATTAAGTTAATCTCTGCAAAAGCGCATGGCCCCACATGACTTTC
TTCGCTGTCGTTATAAGATAAGCCTATTTTTATGTGTTCCGCTTTGCTTC
TCTCTTTGTTTTTTTTTATATATCCTAAATGAATCCCCGAGGGGACAAAC
ATCCCATGGAGAGGAGTTTTTTTTTGTTTTTTTTTAACCCCCGGAAGGCT
GAGGTAAAAACCTTTTCCGCTGCTTCCACATCCAGGCCTTCGCCCAAACA
TGTCTACATTTCCTTTAACAGAGCAGAGTTTCCTCTGCGGGGTATGGAGA
GGAGGTTGCAGCACTTTTGACTGACGTTGCTTCGGAAGAGGTAGATGAAG
CACTTGGAGGCGTGAAAACATGATCGATCAAACCTTTTTCCGCACATGAC
TCGGCGGAAGAGACAATTCTAATGTTCTTGAACCTCTCAAAAATACCCCG
TGCATTGTAAAACCGGCTCTCTATTGCTAGTAGTGGGGCTGGTTCGAGCA
TTTTGTTGAGGCGGGTATTTGTCATTATCCATAATGTGTCGGGTCTTTGG
GGATTTTTTTTTTTTTTTCTGGATGAGTTGAAAATAAAGAAGGATATTTT
ACCCACAGATGTAATGCTTCATCATATACATACATAGTGTATAACGATGT
GTCCTTATTAGATTAATCCTTTTGGGTGCTGATTTCCATGAAAGTCCCCC
CATTTATAATGAAAGTGATATTTTAGACGTGATGGTATATGACATGGTAA
CGATGACGGGGATAGAGAGCTACCGCCGCCGTTCGTACAAACATTCCAGA
ACACAGAGTTTTTTTTTGTTTTTAAACCCCCGGAAGGCTAAGGCAAAAAC
CTCTATCCGATGCTTCCATACCGAAGTACGTCTACATTTCCTTTTACAGA
ACAATTTATTCCTCTGCGGGGTAGGCAGTGTGGGGGTTGCACCCACTAAA
AGACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACC
AGTTCGGGCGTAGGTCCATGAGTACAGATAGTACATACCACAAACAGACG
GGCAGCGCCCAGCATTCAACCATACACACACAAATATATATATATATATA
TATATATTCCCCTGAAGCAGCCTCCTGGCGCCCGAATGGTAGATGTGAAC
TGTCACACAGATGTCTATTATTTACCCTCCGCTGTCGAGACAGACGGGCG
GACCTATAAAATTATTATCATGTCAACTTGATACTCACGGTATTTATTCC
TCTTTCATCAGGGGATGATTCCAAGGTAACCCCGGCCACGAACGCCAACA
ACGCTGGGGGCGGTGCGCGGCGAAAGAAGGCCGCGTACGCTGGAGGGTTG
GTGCTGGAGCCCAAGAAAGGCTTGTACGACGAGTACATCTTGCTGCTGGA
TTTCAACAGCCTGTACCCTTCCCTCATCCAGGAGTATAACCTGTGCTTCA
CCACCATGAACTGGGCGGCGACCGACATGTCCGCGCAGGTTTGTTGCTTT
TCGCTTGATACCTGTTGTTGTTTGATCCAATTAAATATATATATATATAT
CATGCCTAAGTTCTTTTTAACCCTCCGAAGGCTAAGGCAAAAACCTTTAT
CCGATGCTTCCATACTTGAGTATTTCTACCGAGTATTTCTATATTTCCTT
TAATAGAACAGAGCTATTTATTCCTCTATGGGGGTAGGCGCCACCCCGTT
CGGCCGAACCAAGTAGGGGGTGTGGGGGTTGCACCCACTAAAAGACCTAT
GACTAGACTTGCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGG
CGTGAGTCCGTGGATCATGTCTAATTTAGTTAACTTGTATTTCAGCGCGT
CATTTTCCCTCGGAATATAATATAGATGTTATTTACTTGGAGAACCTATG
AGGGTTCACCGATGTATTTTTACGGAGGACTTGATGTTTAAACAGGTGTT
AAACAGGATCCTCTCCAAGTGTCATTGTTATTTCTTTTTTTGAAGCACAC
CTTCCTAATCAAGGTGAAACTAGCACGCCTTATTCTGTGTGTGTGGTTCG
AACGTTCCAACCCCCCCCCCCCCCCCAAGAAAAAAAATAAAAAAATAATA
AATAATAAACAAGTAATGAAATGCCGGGGAAAACACATGGAAAACAGGGT
CACGACGAGGAGGAAGAAGACGATGAGCTTCGCACGGGTCCCAAGCTTCC
CGCTTTGCCAGAGGAGGGGCTCGAGATGGGGGTGCTACCAAGGGTCATTC
GAACTCTAGTGGAGCGTCGAGCCGTGGTGAAGAAGATGCTCAAGAAAGAG
AGGGTGAGCTTTCTTCAGCAAGTGTATAGTATATCCCCCCCTCTCTCTCT
CTTTTTCTAGAGAAAACGTTACAGGAGCTGTGTGTGTGTGTGTCCATGTT
TTATCTGAGCTCAAAATTTGCAGCTTCTAGAGGTGAGCGTGAGGACGTTC
TTTGCTGTAAGGTCACATCTATAACCTTGTGGTTGTCACATCTATAACCT
TGTGCATGTGTGTTTTCTCTGTTGGTGTCCTCTACCGAAAATTCGTCATT
TTGTGCAGGACCCCTCGAAGAAGCAAGAGTTGGATATTCGGCAAAAAGCT
CTGAAGCTCACGGCCAACTCTATGTATGGATGCCTCGGGTTCTCCTTCAG
GTAACTTTCATTTTTTTTTTTTCACATATTTCACATTTACATAAAAGTAG
TCGGAAAAAAAGAACGTTGATCCATCTGATTTTCACGCAGGGATGGATGC
CCCCCCCCCCCCGCTAACCACCACACAGCGTGATGCGTGATGCCTGATGC
TTGTAGCATGACGTCGATAAATTGTTGTCTTATATTTTGTTTTTTCCTGC
TGCTGCAGTCGTTTCTACGCAAAGCCTATCGCGGCGCTGGTGACGGCTCA
GGGGCGAGAGAGTCTTCAGCGCACGGTGGACCTCGCAGAAACGCAGCTGG
GGCTGGAGGTCATCTATGGAGACACGGATAGCGTGATGATCAACACCCAT
AGCACCGATCTCAAGCAGGCGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1472:21968..25691-

>mRNA_H-paniculata_contig1472.2820.1 ID=mRNA_H-paniculata_contig1472.2820.1|Name=mRNA_H-paniculata_contig1472.2820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig1472:21968..25691- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAGGTCACTTACGGATCTAACAAGGAAGGAGGAGGCGGGGGCAA
GAAAAACAACACGTCCTCCAAGGGTGGCTCTGCTGGGAGAGGCGACGATG
GTGCAGGTCACTTACGGATCTAACAAGGAAGGAGGAGGCGGGGGCAAGAA
AAACAACACGTCCTCCAAGGGTGGCTCTGCTGGGAGAGGCGACGGGGATG
ATTCCAAGGTAACCCCGGCCACGAACGCCAACAACGCTGGGGGCGGTGCG
CGGCGAAAGAAGGCCGCGTACGCTGGAGGGTTGGTGCTGGAGCCCAAGAA
AGGCTTGTACGACGAGTACATCTTGCTGCTGGATTTCAACAGCCTGTACC
CTTCCCTCATCCAGGAGTATAACCTGTGCTTCACCACCATGAACTGGGCG
GCGACCGACATGTCCGCGCAGGGGATGATTCCAAGGTAACCCCGGCCACG
AACGCCAACAACGCTGGGGGCGGTGCGCGGCGAAAGAAGGCCGCGTACGC
TGGAGGGTTGGTGCTGGAGCCCAAGAAAGGCTTGTACGACGAGTACATCT
TGCTGCTGGATTTCAACAGCCTGTACCCTTCCCTCATCCAGGAGTATAAC
CTGTGCTTCACCACCATGAACTGGGCGGCGACCGACATGTCCGCGCAGGG
TCACGACGAGGAGGAAGAAGACGATGAGCTTCGCACGGGTCCCAAGCTTC
CCGCTTTGCCAGAGGAGGGGCTCGAGATGGGGGTGCTACCAAGGGTCATT
CGAACTCTAGTGGAGCGTCGAGCCGTGGTGAAGAAGATGCTCAAGAAAGA
GAGGGGTCACGACGAGGAGGAAGAAGACGATGAGCTTCGCACGGGTCCCA
AGCTTCCCGCTTTGCCAGAGGAGGGGCTCGAGATGGGGGTGCTACCAAGG
GTCATTCGAACTCTAGTGGAGCGTCGAGCCGTGGTGAAGAAGATGCTCAA
GAAAGAGAGGGACCCCTCGAAGAAGCAAGAGTTGGATATTCGGCAAAAAG
CTCTGAAGCTCACGGCCAACTCTATGTATGGATGCCTCGGGTTCTCCTTC
AGGACCCCTCGAAGAAGCAAGAGTTGGATATTCGGCAAAAAGCTCTGAAG
CTCACGGCCAACTCTATGTATGGATGCCTCGGGTTCTCCTTCAGTCGTTT
CTACGCAAAGCCTATCGCGGCGCTGGTGACGGCTCAGGGGCGAGAGAGTC
TTCAGCGCACGGTGGACCTCGCAGAAACGCAGCTGGGGCTGGAGGTCATC
TATGGAGACACGGATAGCGTGATGATCAACACCCATAGCACCGATCTCAA
GCAGGCGAGATCGTTTCTACGCAAAGCCTATCGCGGCGCTGGTGACGGCT
CAGGGGCGAGAGAGTCTTCAGCGCACGGTGGACCTCGCAGAAACGCAGCT
GGGGCTGGAGGTCATCTATGGAGACACGGATAGCGTGATGATCAACACCC
ATAGCACCGATCTCAAGCAGGCGAGA
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