prot_H-paniculata_contig1472.2820.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1472.2820.1
Unique Nameprot_H-paniculata_contig1472.2820.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length246
Homology
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: D7FI10_ECTSI (DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.980e-95
Identity = 166/195 (85.13%), Postives = 180/195 (92.31%), Query Frame = 0
Query:   57 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAATDMS--AQGHDEEEEDDE---LRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQAR 246
            AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAA DMS  AQG +++ ++D+      GPKLP LP EG+++GVLPRVIRTLVERR+VVKKMLKKE+DPS+KQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDL+E QLGLEVIYGDTDSVMINTHSTDLKQ +
Sbjct:  957 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAACDMSTPAQGGEDDMDEDDGAAASAGPKLPDLPAEGMDIGVLPRVIRTLVERRSVVKKMLKKEKDPSRKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLSENQLGLEVIYGDTDSVMINTHSTDLKQVK 1151          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS)

HSP 1 Score: 254 bits (649), Expect = 2.280e-74
Identity = 133/187 (71.12%), Postives = 156/187 (83.42%), Query Frame = 0
Query:   58 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQ 244
            Y+GGLVLEPKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTM W+ ++  A       E  E+  G +LP LP+EGL+ GVLPRVI+TLV+RR  VKK LK E++  KK+EL+IRQ+ALKLTANSMYGCLGFS SRFYA+PIAALVTA GRE+LQRTVDLA+T +GLEVIYGDTDS+MINT  TD+ +
Sbjct:  501 YSGGLVLEPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMEWSKSNAPANV-----EGGEVPQGDQLPPLPDEGLKRGVLPRVIKTLVDRRRNVKKFLKTEKNAEKKEELNIRQQALKLTANSMYGCLGFSHSRFYAQPIAALVTAMGRETLQRTVDLAQTSIGLEVIYGDTDSIMINTRITDVNE 682          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A482T3C7_9ARCH (DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3C7_9ARCH)

HSP 1 Score: 253 bits (647), Expect = 3.980e-74
Identity = 144/218 (66.06%), Postives = 161/218 (73.85%), Query Frame = 0
Query:   57 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWA--------------------ATDMSAQGHDEEEE----DDELR----TGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQAR 246
            AYAGGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT++W                     A   +A+  DEEEE    DDE      TG  LP LPE     GVLPRVI+TLV+RR  VK +LK ERDP ++Q LDIRQKALKLTANSMYGCLGFSFSRFYA+PIAALVTA GRE+LQRTVDLA  Q+GL+VIYGDTDSVMINT+  DL+Q +
Sbjct:  725 AYAGGLVLEPKKGLYDTYILLLDFNSLYPSIIQEYNLCFTTVDWTKYMPKEGALANDARGNAKGPAKGKTAKTEDEEEEVEGSDDEAEGDGGTGNNLPPLPESSSTPGVLPRVIKTLVDRRRQVKNLLKNERDPVQRQLLDIRQKALKLTANSMYGCLGFSFSRFYARPIAALVTAMGREALQRTVDLATHQMGLDVIYGDTDSVMINTNLVDLQQVK 942          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A4D9CVK1_9STRA (DNA polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA)

HSP 1 Score: 249 bits (636), Expect = 3.290e-72
Identity = 132/197 (67.01%), Postives = 158/197 (80.20%), Query Frame = 0
Query:   57 AYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAA----------TDMSAQGHDEEE------EDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINT 237
            AYAGGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT+NW+A            ++    DE++      ED+    G +LP LP+  L+ G+LPRVI+TLV+RR+ VKK+LK ERD +KK++LDIRQKALKLTANSMYGCLGFS SRF+A+PIAALVTA GRE+LQRTVD+A+ QL L+VIYGDTDS+MINT
Sbjct:  946 AYAGGLVLEPKKGLYDSYILLLDFNSLYPSIIQEYNLCFTTINWSAFARPSSTAGGDPLAKTAGDEDDVGLGADEDEAAAGGAQLPPLPDTALDQGILPRVIKTLVDRRSSVKKLLKAERDAAKKEQLDIRQKALKLTANSMYGCLGFSHSRFFARPIAALVTAMGRETLQRTVDVAQNQLSLDVIYGDTDSIMINT 1142          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S2FD72_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FD72_9STRA)

HSP 1 Score: 233 bits (595), Expect = 7.600e-72
Identity = 125/187 (66.84%), Postives = 149/187 (79.68%), Query Frame = 0
Query:   58 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQ 244
            YAGGLVLEPKKGLY+ YILLLDF SLYPS+IQEYN+CFTTM WA     +    E+EE+        LP  PE   + GV+P+VIRT++ RR  VK++LK+E D  KKQ+LDIRQKALKLTANS+YGCLGFS SRF+A+PIAALVTA+GR+ LQRTVDLAE  +GLEVIYGDTDS+MI+T  TDLK+
Sbjct:   14 YAGGLVLEPKKGLYETYILLLDFMSLYPSIIQEYNICFTTMEWAKYKTKSTNPAEDEEEAGFDG---LPPDPENIDDKGVVPKVIRTIINRRVQVKQLLKQETDVGKKQQLDIRQKALKLTANSLYGCLGFSSSRFHAQPIAALVTAKGRQILQRTVDLAENNMGLEVIYGDTDSIMIDTKCTDLKE 197          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S2L169_9STRA (DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L169_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.830e-71
Identity = 128/189 (67.72%), Postives = 155/189 (82.01%), Query Frame = 0
Query:   58 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWA--ATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQ 244
            Y+GGLVLEPKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTM+W+   T  +A+G            G +LP LP+E L+ GVLPRVI+TLV+RR  VK+++K E+D +KK+ELDIRQ ALKLTANSMYGCLGFS SRFYA+PIAAL+TA GRE+LQRTVDL +T +GL+VIYGDTDS+MINT  +D+ +
Sbjct:  914 YSGGLVLEPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMDWSKSVTPNNAEGV--------APQGDQLPPLPDESLDRGVLPRVIKTLVDRRRAVKRLVKTEKDQTKKEELDIRQLALKLTANSMYGCLGFSHSRFYAQPIAALITAMGRETLQRTVDLTQTTIGLDVIYGDTDSIMINTRISDVNE 1094          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: K0T5T4_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5T4_THAOC)

HSP 1 Score: 243 bits (620), Expect = 1.140e-70
Identity = 127/187 (67.91%), Postives = 153/187 (81.82%), Query Frame = 0
Query:   58 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNWAATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQ 244
            YAGGLVL+PKKGLYD +ILLLDFNSLYPSLIQEYNLCFTTM+WA         D++  D+      +LP+LP+E L+ GVLPRVI++LVERR  VKK +K E+D  KK+EL+IRQ ALKLTANSMYGCLGF  SRFYA+PIAALVTA GR++LQRTVD+ +T +GL+VIYGDTDS+MINT  TDL++
Sbjct:  368 YAGGLVLDPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTMDWAK--------DKDIADEAGAQENQLPSLPDESLDRGVLPRVIKSLVERRRNVKKFMKSEKDADKKEELNIRQLALKLTANSMYGCLGFQNSRFYARPIAALVTAMGRQTLQRTVDITQTTIGLDVIYGDTDSIMINTRITDLEE 546          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S3QD78_9STRA (DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD78_9STRA)

HSP 1 Score: 243 bits (621), Expect = 3.370e-70
Identity = 128/190 (67.37%), Postives = 153/190 (80.53%), Query Frame = 0
Query:   58 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNW------AATDMSAQGHDEEEEDDELRT----GPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINT 237
            Y+GGLVLEPKKGLYD +ILLLDFNSLYPS+IQEYN+CFTTMNW      A  D ++  + E+ ++D++        KLP +P+E  + GVLPRVI+TLVERR  VKKMLK+E++  KKQE DIRQ ALKLTANSMYGCLGFS SRFYA+PIAAL+TA GRE+LQRTV +AE  +GL+VIYGDTDSVMINT
Sbjct:  919 YSGGLVLEPKKGLYDSFILLLDFNSLYPSIIQEYNMCFTTMNWGDYVYKAGNDATSNSNGEDGDEDQVAEVVSMDDKLPPIPDESTKEGVLPRVIKTLVERRKAVKKMLKQEKNADKKQEFDIRQMALKLTANSMYGCLGFSHSRFYAQPIAALITAMGRETLQRTVSIAEDTVGLDVIYGDTDSVMINT 1108          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S4IIV6_9STRA (DNA polymerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IIV6_9STRA)

HSP 1 Score: 235 bits (600), Expect = 2.200e-67
Identity = 129/199 (64.82%), Postives = 148/199 (74.37%), Query Frame = 0
Query:   58 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN-WAATDMSAQGHDEEEEDDEL------------------RTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINT 237
            Y+GGLVLEPKKGLYD YILLLDFNSLYPS+IQEYNLCFTT++ W+     A      +                         G  LP++P+   ++GVLPRVIRTLVERR  VKK+LK ERD  KK+ELDIRQKALKLTANSMYGCLGFSFSRFYA+PIAALVTA GRE+LQ+TVD+AE  +GL+VIYGDTDSVMINT
Sbjct:  776 YSGGLVLEPKKGLYDSYILLLDFNSLYPSIIQEYNLCFTTLDDWSGLQAKALAASTPKGGTPSGXXXXXXXXXXXXVALIENAGDALPSIPDPSKDVGVLPRVIRTLVERRKAVKKLLKNERDADKKEELDIRQKALKLTANSMYGCLGFSFSRFYAQPIAALVTAMGRETLQKTVDIAEKSVGLDVIYGDTDSVMINT 974          
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Match: A0A7S1UP17_9STRA (DNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UP17_9STRA)

HSP 1 Score: 229 bits (585), Expect = 6.450e-67
Identity = 123/185 (66.49%), Postives = 144/185 (77.84%), Query Frame = 0
Query:   58 YAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMN-WAATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRAVVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTD 241
            Y+GGLVLEPKKG YD +ILLLDFNSLYPS+IQEYNLCFTTM+ WA        H             +LP LPEE  E GVLPRVI++LV+RR VVK++LK E +  K+Q LDIRQKALKLTANSMYGCLGFS SRFYA+PIAALVTA GRE+LQ++VD+A+  +GL VIYGDTDS+MI+T  TD
Sbjct:  514 YSGGLVLEPKKGYYDSFILLLDFNSLYPSIIQEYNLCFTTMDDWA-------DHANNNAXXXXXXSSELPELPEESKERGVLPRVIKSLVDRRRVVKRLLKNETNDDKRQNLDIRQKALKLTANSMYGCLGFSHSRFYAQPIAALVTAMGRETLQKSVDIAQESVGLSVIYGDTDSIMIDTRITD 691          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1472.2820.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI10_ECTSI1.980e-9585.13DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
B8LEG9_THAPS2.280e-7471.12DNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A482T3C7_9ARCH3.980e-7466.06DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepI... [more]
A0A4D9CVK1_9STRA3.290e-7267.01DNA polymerase n=1 Tax=Nannochloropsis salina CCMP... [more]
A0A7S2FD72_9STRA7.600e-7266.84DNA-directed DNA polymerase (Fragment) n=1 Tax=Dic... [more]
A0A7S2L169_9STRA2.830e-7167.72DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=2... [more]
K0T5T4_THAOC1.140e-7067.91DNA polymerase n=1 Tax=Thalassiosira oceanica TaxI... [more]
A0A7S3QD78_9STRA3.370e-7067.37DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=1... [more]
A0A7S4IIV6_9STRA2.200e-6764.82DNA polymerase n=1 Tax=Odontella aurita TaxID=2655... [more]
A0A7S1UP17_9STRA6.450e-6766.49DNA polymerase (Fragment) n=1 Tax=Grammatophora oc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006172DNA-directed DNA polymerase, family BPRINTSPR00106DNAPOLBcoord: 172..184
score: 56.49
coord: 225..233
score: 76.12
coord: 75..88
score: 55.86
IPR006172DNA-directed DNA polymerase, family BSMARTSM00486polmehr3coord: 1..239
e-value: 0.005
score: -10.8
IPR023211DNA polymerase, palm domain superfamilyGENE3D3.90.1600.10coord: 57..245
e-value: 2.0E-68
score: 232.0
NoneNo IPR availableTIGRFAMTIGR00592TIGR00592coord: 43..244
e-value: 2.1E-88
score: 295.6
NoneNo IPR availableGENE3D1.10.287.690coord: 136..188
e-value: 2.0E-68
score: 232.0
NoneNo IPR availablePANTHERPTHR45861FAMILY NOT NAMEDcoord: 36..245
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 52..244
IPR006134DNA-directed DNA polymerase, family B, multifunctional domainPFAMPF00136DNA_pol_Bcoord: 53..245
e-value: 7.6E-67
score: 226.0
IPR017964DNA-directed DNA polymerase, family B, conserved sitePROSITEPS00116DNA_POLYMERASE_Bcoord: 227..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1472contigH-paniculata_contig1472:21968..25691 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1472.2820.1mRNA_H-paniculata_contig1472.2820.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1472 21968..25691 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1472.2820.1 ID=prot_H-paniculata_contig1472.2820.1|Name=mRNA_H-paniculata_contig1472.2820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
MVQVTYGSNKEGGGGGKKNNTSSKGGSAGRGDGDDSKVTPATNANNAGGG
ARRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTMNW
AATDMSAQGHDEEEEDDELRTGPKLPALPEEGLEMGVLPRVIRTLVERRA
VVKKMLKKERDPSKKQELDIRQKALKLTANSMYGCLGFSFSRFYAKPIAA
LVTAQGRESLQRTVDLAETQLGLEVIYGDTDSVMINTHSTDLKQAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006172DNA-dir_DNA_pol_B
IPR023211DNA_pol_palm_dom_sf
IPR006134DNA-dir_DNA_pol_B_multi_dom
IPR017964DNA-dir_DNA_pol_B_CS