mRNA_H-paniculata_contig14717.2817.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14717.2817.1
Unique NamemRNA_H-paniculata_contig14717.2817.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 454 bits (1169), Expect = 5.410e-151
Identity = 247/374 (66.04%), Postives = 280/374 (74.87%), Query Frame = 1
Query:  115 KKIRDLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSG--TCFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPA-TAKESSSKKSAIDFSADGDESDEGFMYATTHNGKEVKVNTAGAT------------------------------------------LLVDTGATETMLDDRLIPGLKEIMQEYKQLVKPKAIT 1101
            K   DLYAILY LVELPA+LSVQKHEDD++ISGDGQAAF+ELNLNYNKVTDEVIRATMEEL+NTPMEP QNPDDYFNQKHLLRHK +KMGETISD YF D CVTGFT+EYKDVKMIMYRDPDFNVD+MQTTMRHMFLDEQSR G KG IAGRGFAM  TTS   TCF+CGE GHI RNC  KRGKG+ ++TKPAGAAKWCSVHFTT+HSDEEC+EQGA RP+KS++TGKA SAC       S S K   A T +E+SS ++ IDFSA+G ES+EGFMYA  H G+++K    GAT                                          LL+DTGA+E MLDD LIPGLKEIM+E+K+L KPK ++
Sbjct:   59 KSNEDLYAILYRLVELPASLSVQKHEDDSKISGDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGK-KKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSNKTELAMTKQEASSTQAEIDFSAEG-ESEEGFMYAIVHKGEDLKPMATGATPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIDTGASENMLDDCLIPGLKEIMREHKELAKPKVVS 430          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 2.380e-122
Identity = 190/260 (73.08%), Postives = 208/260 (80.00%), Query Frame = 1
Query:  286 MEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSG--TCFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSN-DTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEGFMYATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPGLKE 1056
            ME+L NT MEPGQNPDDYFN KHLLRHKV+KMGE ISDRYFKD+CVTGFT EYK+VKMIM+RDP+FNV+ MQTTM HM LDEQSRKGSKGGIAGRGF M TT S   TCF CGE GHIRRNC ++RGKGR ++TKPAGA KWC  HFTTK+SDEECY QGAKRP      T KAFSAC H    SS S +K   TAKE+SS K+AID S DGDESDEGFMYATT  G EV+ N  G TLLV+ GATETM DDRLIP LK+
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASSTKAAIDSSTDGDESDEGFMYATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKD 260          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 1.340e-117
Identity = 199/339 (58.70%), Postives = 247/339 (72.86%), Query Frame = 1
Query:   91 SSFGSEINKKIRDLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEGFMYATTH--NGKEVKVNTAGATLLVDTGATETMLDDRLIPGLKEIMQEYKQLVKPKAI 1098
            ++FGS       DLYAIL+L VELPAALS+QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHLLR ++ KMGE ISDR FKDICV GF+DEYKDVK++++RDP FNV  M +TMR++FLDEQSRKG KG IAGRGFAMATT S   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS H TT HSDEECY+QG KRPE + D+ K F+AC++    SSAS K       +S+++ + +DF+ D D  D GFM+AT    +G+    ++ G  L+VD+ A+ETM D+RLIP     + +Y Q   PK +
Sbjct:   92 AAFGSYARAN-EDLYAILFLQVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKKD------DSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIPDGN--LHDYTQRNSPKIV 420          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 3.810e-117
Identity = 196/318 (61.64%), Postives = 238/318 (74.84%), Query Frame = 1
Query:  127 DLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPAT---AKESSSKKSAIDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 1047
            DLYAIL+ LVELPAAL+V KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   + K   T    +   ++K+ IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM DDRLIP 
Sbjct:   83 DLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 360 bits (925), Expect = 1.320e-116
Identity = 196/318 (61.64%), Postives = 238/318 (74.84%), Query Frame = 1
Query:  127 DLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSK------KSAIDFSADGDESDEGFMY---ATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 1047
            DLYAIL+ LVELPAAL+V KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTHXXXX + S        K  + K      K+ +DFS D D    GFMY    +  +G+       G + LVD+GA+ETM D+RLIP 
Sbjct:   83 DLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXXTQSRDTHAKPTKRETPKETEKTEKAEVDFSYDEDTFKGGFMYHAICSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 1.130e-113
Identity = 198/318 (62.26%), Postives = 238/318 (74.84%), Query Frame = 1
Query:  127 DLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESSSKKSA-IDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 1047
            DLYAIL+ LVELPAAL+V KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   +  P T    KE+   + A IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM DDRLIP 
Sbjct:   83 DLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPN 397          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5JC59_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC59_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 2.650e-113
Identity = 200/318 (62.89%), Postives = 242/318 (76.10%), Query Frame = 1
Query:  127 DLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGTC-FECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPATA--KE-SSSKKSAIDFSADGDESDEGFMYATTHN---GKEVKVNTAGATLLVDTGATETMLDDRLIPG 1047
            DLYAIL+ LVELPAAL+V KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG   FEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTHXXXXS+ S   + K   T   KE   ++K+ IDFS D D    GFMY  T +   G+       G + LVD+GA+ETM D+RLIP 
Sbjct:   83 DLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPIYFECNEQGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHXXXXSTQSRDTHSKPTTTETPKEIEKTEKAEIDFSYDEDAFKGGFMYHATCSKAGGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 6.750e-113
Identity = 197/318 (61.95%), Postives = 238/318 (74.84%), Query Frame = 1
Query:  127 DLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS--YKKGPATA---KESSSKKSA-IDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 1047
            DLYAIL+ LVELPAAL+V KHEDD  +SGDGQAAF EL  NYN+VTDEVIRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   +  P T    KE+   + A IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM D+RLIP 
Sbjct:   83 DLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 397          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 1.220e-112
Identity = 190/328 (57.93%), Postives = 235/328 (71.65%), Query Frame = 1
Query:  127 DLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHM-FLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSASYKKGPATAKESSSKKSAIDFSADGDESDEGFMYATTHNGKE--VKVNTAGATLLVDTGATETMLDDRLIPGLKEIMQEYKQLVKPKAI 1098
            DLYAIL+LLVELPAALS+QKHEDD  ISGDGQAAF EL  NY++VTDEVIRA MEEL N PM PG+NPDDYFNQKHL+R ++ KMGE ISDR  KDI V GF+DEY+DVK++++RDP FN   MQ+T+R+  + +EQSRKG KG IAGRGFAMATT S   C  C E GHIRRNCP+ + + + ++TKPAGA KWC  H TT HSDEECY+QG KRPE + D+ KAF+AC+     SSA  K       +S+++ +  DF+ D D  D GFM+ T     E     ++ G+ LLVDTGA+ETM D+RLIP     + +Y Q   PK +
Sbjct:   43 DLYAILFLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCCKHNTTSHSDEECYQQGGKRPEDTKDSSKAFTACSDCTHCSSAPNKN------DSNNEVAVADFTRDEDAFDSGFMFGTCSRISERNFAASSTGSILLVDTGASETMFDNRLIPDGN--LHDYTQRNSPKIV 361          
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 1.260e-111
Identity = 194/318 (61.01%), Postives = 238/318 (74.84%), Query Frame = 1
Query:  127 DLYAILYLLVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELVNTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKDVKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSGT-CFECGENGHIRRNCPRKRGKG-RMQRTKPAGAAKWCSVHFTTKHSDEECYEQGAKRPEKSNDTGKAFSACTHXXXXSSAS---YKKGPATA--KESS-SKKSAIDFSADGDESDEGFMYATT---HNGKEVKVNTAGATLLVDTGATETMLDDRLIPG 1047
            DLYAIL+ LVELPAAL+V KHEDD  + GDGQAAF EL  NYN++TDE IRA +++L  T MEPG+NPDD+FN+KH LR +++KMGETISDR FKDICV GF+++YKD+KM+++RDP F+V QMQ TMR++FLDEQ RK +KG IAGRGFAMAT TSG  CFEC E GH+RRNCP ++ +G R ++TKPAGA KWCSVH TT HSDEECY QGAKRPE+   TGKAFSACTH    S+ S   + K   T   KE+  ++K+ IDFS D D    GFMY  T    +G+       G + LVD+GA+ETM D+RLIP 
Sbjct:  102 DLYAILFCLVELPAALTVHKHEDDTGLCGDGQAAFAELKANYNRLTDEAIRAELDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPER---TGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPN 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14717.2817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW66_9PHAE5.410e-15166.04CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6Q1_ECTSI2.380e-12273.08CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L580_9PHAE1.340e-11758.70CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJB9_9PHAE3.810e-11761.64Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KN28_9PHAE1.320e-11661.64Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5K3T5_9PHAE1.130e-11362.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC59_9PHAE2.650e-11362.89gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A6H5L1Z9_9PHAE6.750e-11361.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXR7_9PHAE1.220e-11257.93CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUN9_9PHAE1.260e-11161.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14717contigH-paniculata_contig14717:4303..6199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1103
Cds size1101
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929171.502466-CDS-H-paniculata_contig14717:4304..52791622929171.502466-CDS-H-paniculata_contig14717:4304..5279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14717 4305..5279 -
1691480759.278051-CDS-H-paniculata_contig14717:4304..52791691480759.278051-CDS-H-paniculata_contig14717:4304..5279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14717 4305..5279 -
1622929171.5250278-CDS-H-paniculata_contig14717:6073..61991622929171.5250278-CDS-H-paniculata_contig14717:6073..6199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14717 6074..6199 -
1691480759.287364-CDS-H-paniculata_contig14717:6073..61991691480759.287364-CDS-H-paniculata_contig14717:6073..6199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14717 6074..6199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14717.2817.1prot_H-paniculata_contig14717.2817.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14717 4305..6199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14717.2817.1

>prot_H-paniculata_contig14717.2817.1 ID=prot_H-paniculata_contig14717.2817.1|Name=mRNA_H-paniculata_contig14717.2817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=367bp
VDKTTSLATGPSRYTKLLSFRQQRRFRTEGSSFGSEINKKIRDLYAILYL
LVELPAALSVQKHEDDNEISGDGQAAFRELNLNYNKVTDEVIRATMEELV
NTPMEPGQNPDDYFNQKHLLRHKVQKMGETISDRYFKDICVTGFTDEYKD
VKMIMYRDPDFNVDQMQTTMRHMFLDEQSRKGSKGGIAGRGFAMATTTSG
TCFECGENGHIRRNCPRKRGKGRMQRTKPAGAAKWCSVHFTTKHSDEECY
EQGAKRPEKSNDTGKAFSACTHCTHCSSASYKKGPATAKESSSKKSAIDF
SADGDESDEGFMYATTHNGKEVKVNTAGATLLVDTGATETMLDDRLIPGL
KEIMQEYKQLVKPKAIT
back to top

mRNA from alignment at H-paniculata_contig14717:4303..6199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14717.2817.1 ID=mRNA_H-paniculata_contig14717.2817.1|Name=mRNA_H-paniculata_contig14717.2817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1897bp|location=Sequence derived from alignment at H-paniculata_contig14717:4303..6199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACAAGACGACGAGTTTAGCAACCGGGCCTTCCAGGTACACCAAACT TTTGTCATTCCGACAGCAGCGAAGGTTCAGGACGGAGGGTTCAAGTTTCG GTTCGGAGATCAACAAGAAGATACGGGTCGAGCCAGGACAGACGAGCTCG ACTCAGGAAGACAAGTAAGAGGAATACGGTCTCACGCACACACACAGGGC CTTCACAACACACACCTGATCTGGTAGTGGGAGGAGCTCCTTTAGTGCTG TAGTCACCAACACTTCCCTCGGAGAAAAAGGCTCGCAAATCGAGCAAAGG ACTGCTGTATCGACAGCAGGGACGGTCCACACCGCATTCCTATACACCCA TCCGCGAGGAGAGGGTAGCAGGAGCGGGGCCGGGAAAAAGACGACCTACA ACCGTAGTCCTATACACCGATCCGAGAGGAGAGGGTAGCAGGAACGGGGT CGAGACGGTCCACACCGTAGTCCTATGCACCCATCCGCGAGGAGAGGGTA ACAGGAGCGGGGCCGGGAAACGACGACCTCAACCGTAGTCCTTTACACAG GAACGGGGTCGGGAAGCCTCGGGCTCACACCACGAGCAAACAACTCCTAC GACAGGAGGGATCGCTGCGACAGCAGGAAACACCAGCATCAGCCTGTACA CCACAAGGCAACAGGAGCGCATCGCGATAGGAAAGGCACATCAAGATGGG TGATAATTCCCCCGTCGACAACACCACTAACCTCGCCAACACCATTCGAG GACTGAAGAAGTTCGATGGAAGGAACCCAGCCGAATTCAAAGGTTGGATG AAGAAGCTCTGCGTCGTCCTGGGAGTTACACGCAGGGACATTCTCCCGCT GCTTAAAGACGAACGCAGGCCTGCCGAAACGGATACTGCTGCCTACGCCG CCTACTGCAAGTCGAACGAGGACTTGTACGCCATACTCTACTTGCTAGTG GAACTACCGGCGGCCCTTTCGGTGCAGAAGCACGAGGATGACAACGAGAT CAGCGGAGACGGACAGGCGGCCTTCAGGGAACTGAACCTGAACTACAACA AGGTTACGGACGAAGTGATTCGAGCCACCATGGAGGAGCTGGTCAACACG CCCATGGAGCCAGGACAGAACCCGGACGACTACTTCAATCAGAAGCACCT CCTTCGACACAAGGTCCAGAAGATGGGGGAGACCATCTCGGACCGCTACT TCAAGGATATATGCGTCACAGGATTCACCGACGAGTACAAGGACGTGAAG ATGATCATGTACCGCGACCCAGACTTTAACGTCGACCAGATGCAGACCAC CATGCGGCACATGTTTCTGGACGAACAATCTCGCAAAGGATCCAAAGGTG GCATTGCCGGCCGCGGCTTCGCCATGGCCACAACCACATCGGGGACCTGT TTCGAATGCGGCGAGAATGGACACATCCGCAGGAACTGCCCCCGAAAGAG AGGCAAGGGAAGAATGCAGAGGACCAAGCCGGCGGGAGCCGCCAAGTGGT GCTCCGTTCACTTCACGACCAAACACTCCGACGAAGAATGCTACGAGCAA GGAGCGAAGCGGCCGGAAAAATCGAACGACACGGGCAAGGCTTTCTCGGC ATGTACGCACTGCACGCACTGCTCTTCAGCTAGCTACAAGAAGGGGCCAG CCACTGCGAAGGAGTCGAGCAGCAAGAAATCCGCAATCGACTTTAGTGCG GACGGCGACGAGTCCGATGAAGGATTCATGTACGCCACCACTCATAACGG CAAGGAAGTCAAAGTCAACACTGCAGGAGCCACCCTACTTGTAGACACCG GCGCAACAGAGACCATGCTCGACGACCGCCTCATCCCAGGCCTGAAGGAG ATCATGCAAGAGTACAAGCAACTCGTGAAGCCGAAGGCCATCACGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14717:4303..6199-

>mRNA_H-paniculata_contig14717.2817.1 ID=mRNA_H-paniculata_contig14717.2817.1|Name=mRNA_H-paniculata_contig14717.2817.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at H-paniculata_contig14717:4303..6199- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACAAGACGACGAGTTTAGCAACCGGGCCTTCCAGGTACACCAAACT
TTTGTCATTCCGACAGCAGCGAAGGTTCAGGACGGAGGGTTCAAGTTTCG
GTTCGGAGATCAACAAGAAGATACGGGTGGACAAGACGACGAGTTTAGCA
ACCGGGCCTTCCAGGTACACCAAACTTTTGTCATTCCGACAGCAGCGAAG
GTTCAGGACGGAGGGTTCAAGTTTCGGTTCGGAGATCAACAAGAAGATAC
GGGACTTGTACGCCATACTCTACTTGCTAGTGGAACTACCGGCGGCCCTT
TCGGTGCAGAAGCACGAGGATGACAACGAGATCAGCGGAGACGGACAGGC
GGCCTTCAGGGAACTGAACCTGAACTACAACAAGGTTACGGACGAAGTGA
TTCGAGCCACCATGGAGGAGCTGGTCAACACGCCCATGGAGCCAGGACAG
AACCCGGACGACTACTTCAATCAGAAGCACCTCCTTCGACACAAGGTCCA
GAAGATGGGGGAGACCATCTCGGACCGCTACTTCAAGGATATATGCGTCA
CAGGATTCACCGACGAGTACAAGGACGTGAAGATGATCATGTACCGCGAC
CCAGACTTTAACGTCGACCAGATGCAGACCACCATGCGGCACATGTTTCT
GGACGAACAATCTCGCAAAGGATCCAAAGGTGGCATTGCCGGCCGCGGCT
TCGCCATGGCCACAACCACATCGGGGACCTGTTTCGAATGCGGCGAGAAT
GGACACATCCGCAGGAACTGCCCCCGAAAGAGAGGCAAGGGAAGAATGCA
GAGGACCAAGCCGGCGGGAGCCGCCAAGTGGTGCTCCGTTCACTTCACGA
CCAAACACTCCGACGAAGAATGCTACGAGCAAGGAGCGAAGCGGCCGGAA
AAATCGAACGACACGGGCAAGGCTTTCTCGGCATGTACGCACTGCACGCA
CTGCTCTTCAGCTAGCTACAAGAAGGGGCCAGCCACTGCGAAGGAGTCGA
GCAGCAAGAAATCCGCAATCGACTTTAGTGCGGACGGCGACGAGTCCGAT
GAAGGATTCATGTACGCCACCACTCATAACGGCAAGGAAGTCAAAGTCAA
CACTGCAGGAGCCACCCTACTTGTAGACACCGGCGCAACAGAGACCATGC
TCGACGACCGCCTCATCCCAGGCCTGAAGGAGATCATGCAAGAGTACAAG
CAACTCGTGAAGCCGAAGGCCATCACGGACTTGTACGCCATACTCTACTT
GCTAGTGGAACTACCGGCGGCCCTTTCGGTGCAGAAGCACGAGGATGACA
ACGAGATCAGCGGAGACGGACAGGCGGCCTTCAGGGAACTGAACCTGAAC
TACAACAAGGTTACGGACGAAGTGATTCGAGCCACCATGGAGGAGCTGGT
CAACACGCCCATGGAGCCAGGACAGAACCCGGACGACTACTTCAATCAGA
AGCACCTCCTTCGACACAAGGTCCAGAAGATGGGGGAGACCATCTCGGAC
CGCTACTTCAAGGATATATGCGTCACAGGATTCACCGACGAGTACAAGGA
CGTGAAGATGATCATGTACCGCGACCCAGACTTTAACGTCGACCAGATGC
AGACCACCATGCGGCACATGTTTCTGGACGAACAATCTCGCAAAGGATCC
AAAGGTGGCATTGCCGGCCGCGGCTTCGCCATGGCCACAACCACATCGGG
GACCTGTTTCGAATGCGGCGAGAATGGACACATCCGCAGGAACTGCCCCC
GAAAGAGAGGCAAGGGAAGAATGCAGAGGACCAAGCCGGCGGGAGCCGCC
AAGTGGTGCTCCGTTCACTTCACGACCAAACACTCCGACGAAGAATGCTA
CGAGCAAGGAGCGAAGCGGCCGGAAAAATCGAACGACACGGGCAAGGCTT
TCTCGGCATGTACGCACTGCACGCACTGCTCTTCAGCTAGCTACAAGAAG
GGGCCAGCCACTGCGAAGGAGTCGAGCAGCAAGAAATCCGCAATCGACTT
TAGTGCGGACGGCGACGAGTCCGATGAAGGATTCATGTACGCCACCACTC
ATAACGGCAAGGAAGTCAAAGTCAACACTGCAGGAGCCACCCTACTTGTA
GACACCGGCGCAACAGAGACCATGCTCGACGACCGCCTCATCCCAGGCCT
GAAGGAGATCATGCAAGAGTACAAGCAACTCGTGAAGCCGAAGGCCATCA
CG
back to top