prot_H-paniculata_contig1471.2815.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1471.2815.1
Unique Nameprot_H-paniculata_contig1471.2815.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length478
Homology
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BLAST of mRNA_H-paniculata_contig1471.2815.1 vs. uniprot
Match: D8LJ60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ60_ECTSI)

HSP 1 Score: 447 bits (1149), Expect = 5.150e-151
Identity = 250/308 (81.17%), Postives = 266/308 (86.36%), Query Frame = 0 
Query:  111 DEMTLDVGSEPGSGLEYTGADGDSRVISREIYQGKTFEDWDDMEANVRRLARKAGFKVVKDSKGEKRADGRQKRIVWKCDCAGMKTPRKSQKQDVTLSPT-RDRPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRLSGPLRAGRQDPVLPEELQAEHVSALKEWARIPVAVRTQMQILRHEFFEGRMLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXXXPSLLVASLPSSRLNDPIFRESLTMIGNALRQALESGADETGLKRRCEGFADGLKKTNDVNGDGSVRLAKRPRE--GELAGAG 415
            +E  LDVG EPG+GL Y G DG+ R+ISREIYQGKTF+DWDDME NVRRLARKAGFK   DSKGEKRADGRQKRIVWKCDCAGMKTPRK QK D+T   T R+RPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRL+GPLRAGRQDPVLPEEL AEHVSALKEWARIPVAVRTQMQILRHEFFEGR LSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXX P  +V SLPSSR+NDP+FRES+T+IGNALRQALESGAD  GLKRRCEGFA+GL+KT     D +    KR R   G   GAG
Sbjct:   70 EEPGLDVGIEPGAGLGYPGLDGEMRIISREIYQGKTFDDWDDMEGNVRRLARKAGFK---DSKGEKRADGRQKRIVWKCDCAGMKTPRKGQK-DLTHDQTSRERPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRLAGPLRAGRQDPVLPEELLAEHVSALKEWARIPVAVRTQMQILRHEFFEGRQLSLEAQRCVHTLSGQEAPRRXXXXXXXXXXXXXXXSPGSVVGSLPSSRINDPVFRESMTIIGNALRQALESGADAAGLKRRCEGFAEGLRKTTVAATDNTDPSRKRIRVDGGSPLGAG 373
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1471.2815.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ60_ECTSI5.150e-15181.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004330FAR1 DNA binding domainPFAMPF03101FAR1coord: 160..248
e-value: 3.5E-7
score: 30.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1471contigH-paniculata_contig1471:11933..21428 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1471.2815.1mRNA_H-paniculata_contig1471.2815.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1471 11745..22558 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1471.2815.1 ID=prot_H-paniculata_contig1471.2815.1|Name=mRNA_H-paniculata_contig1471.2815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=478bp
METTPHDVGNHFLSTAPAPSIASPHPEHAQHQQHQLHHQLEEATMQHQQH
DHQHHRQHHQHQQHHQHGHLSQNPHTPPPPHQHHHLQHPQEQLHQQQHEE
PAEEDDGEGDDEMTLDVGSEPGSGLEYTGADGDSRVISREIYQGKTFEDW
DDMEANVRRLARKAGFKVVKDSKGEKRADGRQKRIVWKCDCAGMKTPRKS
QKQDVTLSPTRDRPSKRQGCPFQINATWPEKCLQPGVTRCTLEHNHRLSG
PLRAGRQDPVLPEELQAEHVSALKEWARIPVAVRTQMQILRHEFFEGRML
SLEAQRCVHTLSGQEAPRRRAAAAAAAAAAAAAAAPSLLVASLPSSRLND
PIFRESLTMIGNALRQALESGADETGLKRRCEGFADGLKKTNDVNGDGSV
RLAKRPREGELAGAGTVVAPPPEIPVPAPGVLPTLHHAAHGGPEPGTVSM
EIPGVSNVSMASVMSVAGAPLASPESF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004330FAR1_DNA_bnd_dom