mRNA_H-paniculata_contig147.2808.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig147.2808.1
Unique NamemRNA_H-paniculata_contig147.2808.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig147.2808.1 vs. uniprot
Match: D7FQ77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ77_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 3.410e-60
Identity = 94/142 (66.20%), Postives = 117/142 (82.39%), Query Frame = 1 
Query:  157 PLLPVDFGLWKLAPPVLGLLGLGVYAGYRKQMHSDAVEAQALRQPGAH-VPINAYRVATRALMYGSVLSIGCTSAGVLAVGYFMGVRNVQEFSDKMRAWAPQQMHKLGFRHTPDYIRDRKATRTMTPDEEWEYIGSLMNKDE 579
            PL+PVDFG WKLAP  LGLLGLGVYAG+RKQ+ +DAV A+AL + G   +P + +R+ATRALMYG+ LS+GC SAGVL VGY MGV N++EF+DKM+ WAP+QMH+LGFRH P+YIRDR+A R MT DEEWEY+  L+ K+E
Sbjct:   29 PLIPVDFGYWKLAPAGLGLLGLGVYAGFRKQIKADAVGAEALAKQGLEPLPFSPHRLATRALMYGTALSVGCFSAGVLVVGYSMGVTNLREFNDKMKVWAPEQMHRLGFRHRPEYIRDREAMRGMTYDEEWEYVDRLLEKEE 170
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BLAST of mRNA_H-paniculata_contig147.2808.1 vs. uniprot
Match: K8Z7I1_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7I1_NANGC)

HSP 1 Score: 57.8 bits (138), Expect = 2.380e-6
Identity = 40/130 (30.77%), Postives = 60/130 (46.15%), Query Frame = 1 
Query:  205 LGLLGLGVYAG-YRKQMHSDAVEAQALRQPGA---------HVPINAYRVATRALMYGSVLSIGCTSAGVLAVGYFMGVRNVQEFSDKMRAWAPQQMHKLG----FRHTPDYIRDRKATRTMTPDEEWEY 552
            LG++G GV AG YR    ++ +E      P           H   N  R A +AL  G+VL +  T      VG  MGV  V+EF+ K++ WAP +  +L      +      R+R+    M+ +EE +Y
Sbjct:   57 LGIVGCGVAAGLYRANRDTEGMEEWRKLPPSQQVKHWKRDPHAEFNPTRFAGKALAVGTVLCLSATGTLAFVVGRAMGVGTVEEFTQKLKVWAPAKRRELEAWLKIKPNASLERERERLAAMSYEEEIDY 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig147.2808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ77_ECTSI3.410e-6066.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8Z7I1_NANGC2.380e-630.77Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig147contigH-paniculata_contig147:28790..32929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007150.1
Exons4
Model size914
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig147.2808.1prot_H-paniculata_contig147.2808.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig147 28823..32720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.7046044-UTR-H-paniculata_contig147:28789..288221622929169.7046044-UTR-H-paniculata_contig147:28789..28822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig147 28790..28822 +
1691480758.5170724-UTR-H-paniculata_contig147:28789..288221691480758.5170724-UTR-H-paniculata_contig147:28789..28822Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig147 28790..28822 +
1622929170.1475499-UTR-H-paniculata_contig147:32720..329291622929170.1475499-UTR-H-paniculata_contig147:32720..32929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig147 32721..32929 +
1691480758.5623941-UTR-H-paniculata_contig147:32720..329291691480758.5623941-UTR-H-paniculata_contig147:32720..32929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig147 32721..32929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.7657216-CDS-H-paniculata_contig147:28822..290381622929169.7657216-CDS-H-paniculata_contig147:28822..29038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 28823..29038 +
1691480758.5260649-CDS-H-paniculata_contig147:28822..290381691480758.5260649-CDS-H-paniculata_contig147:28822..29038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 28823..29038 +
1622929170.1026363-CDS-H-paniculata_contig147:31594..317621622929170.1026363-CDS-H-paniculata_contig147:31594..31762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 31595..31762 +
1691480758.5337822-CDS-H-paniculata_contig147:31594..317621691480758.5337822-CDS-H-paniculata_contig147:31594..31762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 31595..31762 +
1622929170.1196866-CDS-H-paniculata_contig147:32142..322681622929170.1196866-CDS-H-paniculata_contig147:32142..32268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 32143..32268 +
1691480758.543966-CDS-H-paniculata_contig147:32142..322681691480758.543966-CDS-H-paniculata_contig147:32142..32268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 32143..32268 +
1622929170.1340919-CDS-H-paniculata_contig147:32558..327201622929170.1340919-CDS-H-paniculata_contig147:32558..32720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 32559..32720 +
1691480758.5527225-CDS-H-paniculata_contig147:32558..327201691480758.5527225-CDS-H-paniculata_contig147:32558..32720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 32559..32720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig147.2808.1

>prot_H-paniculata_contig147.2808.1 ID=prot_H-paniculata_contig147.2808.1|Name=mRNA_H-paniculata_contig147.2808.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MEQRIESRSNPPPRDGSLSSRSSSTTMNTDDINGSSGAEFNPLLPVDFGL
WKLAPPVLGLLGLGVYAGYRKQMHSDAVEAQALRQPGAHVPINAYRVATR
ALMYGSVLSIGCTSAGVLAVGYFMGVRNVQEFSDKMRAWAPQQMHKLGFR
HTPDYIRDRKATRTMTPDEEWEYIGSLMNKDEARAARENEEADREREEQR
IIRAREKRHMERIEEAARRRQQQ*
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mRNA from alignment at H-paniculata_contig147:28790..32929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig147.2808.1 ID=mRNA_H-paniculata_contig147.2808.1|Name=mRNA_H-paniculata_contig147.2808.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4140bp|location=Sequence derived from alignment at H-paniculata_contig147:28790..32929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGCTGAAGACTACATTGTTTGACGCTAAGCATGGAGCAACGAATCGA
GAGCAGAAGTAACCCTCCACCGAGGGATGGGAGCCTTAGCAGTAGGAGTA
GCTCTACTACGATGAACACTGACGATATAAATGGAAGCTCTGGTGCTGAA
TTCAACCCCTTGCTGCCTGTGGACTTCGGCCTCTGGAAGCTGGCGCCGCC
AGTGCTGGGGCTTCTTGGTCTTGGAGTGTACGCAGGCTACAGGAAACAGG
TACGAAGCGATGGTTGCAACACAGATTAATCGCATTTCAACGTGACCAAG
GTGGTTTTGACGTTTATTTTGGCAAGAATACGCCACTTACGCGCAGTACA
GCAGGCACAAACCTGCAGGCAGTAGAGCTCTAAAGCCAGGGGTCGAAGAT
ATATGTTATCGTACTGCAGTGCTGTGTACGACGTGCGCATATGAGGTATC
ATGCACGATTTGTGAAGCTTCACGTCTGATGAATCCATGAAACGGCAGAG
TCGTGACGGTGGTGGCGTAGTTCCTACTTCAACACATACGCAACGCCGCC
ATTGTGTCCCGTTTTACCTCGCTCTCACAAAACTCCTCACTAATATAATA
AGTCATTCCGAGGTCCTACTTGAATAAAAAAAATCTTGGAAATTTGAAAT
CGCACATATTACGTATCGCGTTGTAGACACCGTTTATGGAGCGGAACGCG
CTCAACACAATCTGCCCAACCGTGCGACCACTGTAGATTATCTGTGGCTA
TCATGGGAGTACTGCACCGCAATTCCGTGCTTCCAAAGCTGTATGGCTTT
TATCAACCATGTAAGAGTTGATTTCAATTAAAAATTTTGTATCTATAATA
TAAATTGGATGAAATTGTGAAAAAGCTGGTGTCATATGAATAGGCAGGGT
ATTTGTACCGCACTAACTTAGCACTTCTTACGGCAAGAGTCTTTTTGAGA
TTTTTTTAATATGGTCAGTTTCTCCCTGAAAAACACTTTGTTCACGACGT
GGAGAAGTTTTTTCGAGAGAAAGTGACCCCAATTTTCTCCAGACCCCTTT
AAATGGCCCAACGGAGCGAAAATTCCCCCCACTTTTGCCTGTTTTTTTTT
CGGGAACAAAATTCTCAAACCTGTATGTTCATTGTGTAGGGTTTGTTGCA
CGCATGTGGATTGTCCCACGATCATGATGGTAGCCGATCACCGCACACCA
TCATGAGGCTCGCACCTGTCATACATGACACGTCGACGCCGACACAACCA
AGCTAGACACACGATACCGAGGTGATGGCGGCGGGACTGCAGCCTTGCAG
GAGCACGTAAAGTCCCTATCGCTGGAAAGCGATGGCAACCTTCCGCTCCT
TCTGCAAGGCTGTCCCATGCTGCCGTCATTGTCACGGATGACGACGGCTA
CAATGATGACAATCCAGAACCCATCTCGCCTGCATATCGAAGGACACTTG
GCGAAACCCGCCGTATACATTCAGCATGTGTATAAGGTGTTTGATCTGGA
GAACAAGCTGATGCCAATGCCCGCCTTCAACAATTGTAAAAAACAGTCGT
CGTGAGTGGATACCTCGTCGTGGTGGAACATGCATGACATTTGAATGTAC
ACTTTCTCATGCTCCACCGTCGATTTATTTCTGACTGATATTTTTTCTCC
GGGCTCGTCCGTAACTTGCACAAAGAATTTTTCGTCTGTTTTTTTTCCCC
AGGAGTGTACGTCCGAGAAAGAAATTTGTGTCGGAAAAACTTTTGCCATG
AGAATTGGTTTTACATCTGGGAAAAAAAGATGACATGCAAAAATAACTAA
TGCAATCGAGGAACCTCAAGGCCTAATCGCCAGTACATTTTATTAATCGT
GTCATGTTGCGACTGCCGCGACTGTGGCAGACCGCCTCCTCCTGTGCCTG
TAGAGATCGACACGTAAGAGAGGACGCTACACACGTGTAGGCTATCTCTC
GCTACGGAATTGCTGGTGCCTGCGAACAGCCTCTTTCCCTCTCTCTTCGT
TGTGGTACCGCAGATCTGATTCTGTATGGAGTAGTACACTAAATGTATCG
CATGCAGTGCTACCTTTTTCTTTCGTCGCCATGCGTATCATACAATTTGC
GCGCCGTTCAGCTGGCTGCAACTTGTCAATGGAACCAATAGTCTATCAGC
TATATTACCTCTACATCAAGCACACGGCGTCGCGGCTGCTGTAGCCAACC
CTTGACGTACGTTGATGAATGTCAGAACGTTAATGCCCTTTCGTACTTAG
CGTCGCTATCTCACTCTACTGTTTTTTATAAGCTTTCGATGTATACGGGT
CTGATCTTATCCCGGCCAAACTAATTCAGTCAGTCGACATTAGGTACCCC
CCCCACTGTCAATAATCCCCCTACTGATTTAATTTTGCTGATAAATGTAT
TCCATTGCAGATGAAAGTCAACATGCTTTGCCCACCAGTGCGACAGCCGT
GGGTTGCCTTACGACTATCATAGGAGCACTGCACCAACATTACCGCGCTT
CCAAAGCGTTCCCAGCGCGCGTTTGACACTGTTTGTATAGTCTGGAAAAA
AAAAAAAAATCGCCCAAGAAAATGGTCACTAGGAATGGCCCTACGTCAGA
CAATCGAGTGCTGATGGTTCAGGGCATACATTTGCATCCACAGGTGGGTG
CAGACGTAAACGTGTCCAAGTACCCATTTTGCGGTAGGGCCGTGTCTGCT
TCAAATCAATGCATTCGCAATGCCAGCCTGCACCGACTGCCTGTCCCGCG
TCCAAATTGTATGTGCGTTGCGTGCCCTTCTCGCTGGCCCGAACGTTCGA
AGCAGATGCACTCCGATGCCGTGGAAGCGCAAGCTTTACGGCAACCAGGG
GCTCACGTACCGATCAACGCGTACCGAGTCGCCACTCGAGCCCTTATGTA
TGGGTCGGTGCTCTCGATAGGGTGCACATCTGCGGGAGTGTTGGCTGTCG
GTTACTTCATGGGTGTGCGGAACGTGAGGACAAATTTGACGGAATGAATA
TCCGCTGGAGGAGATCTTGCTAACGAGCACTACATGATTTTGCTCTCGGA
GTCTCGCATTTGTCATTCGTTTTCAGTGCTACTTACTGCCGCTGCGAAAC
TGGGCGATGCTCATTGTAAAGTTGAAGTTGCCTCAGAAGCTCGAAAGTTT
TCCTGCGTTCCCTGGGTTATTGGCACTATTGCTGAATCCAAGTGGAATTT
CTGTGGTCTCTTCTTCAAGCCATCAGACATGCTAACCATGGTGATTGTTT
CAATCGAGGAATAAGGGGAAGTCATTTAGTCAGCACACCTTGAAATACTG
TGCCTTGAGCTACTAGCTCCAGTTTCCAACCTCCGCCTTCCTCCTATCAC
CAGGTACAAGAATTTTCTGACAAGATGAGAGCGTGGGCACCACAACAGAT
GCACAAGTTGGGATTTCGACATACGCCAGATTACATCAGGGACCGCAAAG
CCACGCGCACCATGACACCTGACGAGGAGGTAAACATGCGGAAAAATTAC
GGTTTGACACCGGGTGATCATGTCCATGATTACGAAAAGAGATCGGTGGC
ATGTATGTGCCGTTTTTATCCCACAGTACTCCTCGGACCTGGTTCCCCTG
GTGTCCAATCATATCCCTTGACAAATCTATATGCGGTGCAGATGAACTAT
TCTGGGATACCACACAACCTCAGAGGCGGCATGTCGGGTATAGCTTAACC
CTCTGGTTACGCTTGCTCCTCTTCCGTTCAATGCTTTTCTCTCGCCTGTT
CTGGGTGCCCACATCACAGTGGGAATACATCGGCAGTTTGATGAACAAGG
ATGAAGCTCGTGCAGCACGAGAAAACGAGGAGGCGGATCGCGAACGTGAA
GAGCAGCGGATTATTCGGGCCCGAGAAAAGCGGCACATGGAGCGTATAGA
AGAAGCAGCGCGACGTCGACAGCAGCAATAATAATCGTTTCTTATGAGTC
ATGTGCTTGTCGTACATGGCACAGTGTCGTGAGAGGGATATTGAAGCAAT
TATCGTTGCTCTGTTTCTTCATATTACGTTTTTTTTGTAGGGGGAACATA
TAGATTCGTCAGAACGAAGAAGGGCAATAAATTGCTGTTTATAACCGACA
GTATTGTGTCAAACAAAAAAATGATCAAATTTTGCCATCA
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Coding sequence (CDS) from alignment at H-paniculata_contig147:28790..32929+

>mRNA_H-paniculata_contig147.2808.1 ID=mRNA_H-paniculata_contig147.2808.1|Name=mRNA_H-paniculata_contig147.2808.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig147:28790..32929+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCAACGAATCGAGAGCAGAAGTAACCCTCCACCGAGGGATGGGAG
CCTTAGCAGTAGGAGTAGCTCTACTACGATGAACACTGACGATATAAATG
GAAGCTCTGGTGCTGAATTCAACCCCTTGCTGCCTGTGGACTTCGGCCTC
TGGAAGCTGGCGCCGCCAGTGCTGGGGCTTCTTGGTCTTGGAGTGTACGC
AGGCTACAGGAAACAGATGGAGCAACGAATCGAGAGCAGAAGTAACCCTC
CACCGAGGGATGGGAGCCTTAGCAGTAGGAGTAGCTCTACTACGATGAAC
ACTGACGATATAAATGGAAGCTCTGGTGCTGAATTCAACCCCTTGCTGCC
TGTGGACTTCGGCCTCTGGAAGCTGGCGCCGCCAGTGCTGGGGCTTCTTG
GTCTTGGAGTGTACGCAGGCTACAGGAAACAGATGCACTCCGATGCCGTG
GAAGCGCAAGCTTTACGGCAACCAGGGGCTCACGTACCGATCAACGCGTA
CCGAGTCGCCACTCGAGCCCTTATGTATGGGTCGGTGCTCTCGATAGGGT
GCACATCTGCGGGAGTGTTGGCTGTCGGTTACTTCATGGGTGTGCGGAAC
ATGCACTCCGATGCCGTGGAAGCGCAAGCTTTACGGCAACCAGGGGCTCA
CGTACCGATCAACGCGTACCGAGTCGCCACTCGAGCCCTTATGTATGGGT
CGGTGCTCTCGATAGGGTGCACATCTGCGGGAGTGTTGGCTGTCGGTTAC
TTCATGGGTGTGCGGAACGTACAAGAATTTTCTGACAAGATGAGAGCGTG
GGCACCACAACAGATGCACAAGTTGGGATTTCGACATACGCCAGATTACA
TCAGGGACCGCAAAGCCACGCGCACCATGACACCTGACGAGGAGGTACAA
GAATTTTCTGACAAGATGAGAGCGTGGGCACCACAACAGATGCACAAGTT
GGGATTTCGACATACGCCAGATTACATCAGGGACCGCAAAGCCACGCGCA
CCATGACACCTGACGAGGAGTGGGAATACATCGGCAGTTTGATGAACAAG
GATGAAGCTCGTGCAGCACGAGAAAACGAGGAGGCGGATCGCGAACGTGA
AGAGCAGCGGATTATTCGGGCCCGAGAAAAGCGGCACATGGAGCGTATAG
AAGAAGCAGCGCGACGTCGACAGCAGCAATAATGGGAATACATCGGCAGT
TTGATGAACAAGGATGAAGCTCGTGCAGCACGAGAAAACGAGGAGGCGGA
TCGCGAACGTGAAGAGCAGCGGATTATTCGGGCCCGAGAAAAGCGGCACA
TGGAGCGTATAGAAGAAGCAGCGCGACGTCGACAGCAGCAATAA
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