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Homology
BLAST of mRNA_H-paniculata_contig147.2804.1 vs. uniprot
Match: D7FQ74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ74_ECTSI) HSP 1 Score: 167 bits (424), Expect = 2.980e-45 Identity = 113/244 (46.31%), Postives = 129/244 (52.87%), Query Frame = 2
Query: 236 VLGFGLQATVAFCPSQQLLLQSVRPADDMRARL---TTTVPSSRNGMAMGFSFTLPTFGKPK---QVTKTITNVWSEELLSLLSDKSRKINDADVMEKIERLEAAGVTFNEDYLYDGPWRVLWKTNTSWQRYFDPFNGVADNRAYQWYEKDGSVTNIAQAFSDKLYVTVDGQGTPASDSRELPYELNVEVSCAWLHVLGRKIPLNFIKGKGTTFVVYNDPKLRVFRSDTGGLVVQTKAEETVPV 949
VL GL AT AF S +S A A+ T+ +SR + G F FG K Q T SEEL L+ + K +D VMEKIE LE DGSVTNIAQA DKLYVTVDGQG+PAS +LPYE+NVEVS AWLH LG KIPL+FIKGKGTTFVVYND +LR+FRSDTGG+VVQTKA+E VPV
Sbjct: 6 VLTLGLHATAAFVTSAGPHSRSTTAAGVHSAKAAISTSRADASRILASTGTGFFESLFGGQKTKEQNNSGETARLSEELFDFLTAEGAKPDDVAVMEKIEELE-----------------------------------------------DGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQTKADEVVPV 202
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_007180.1 |
| Exons | 6 |
| Model size | 1657 |
| Cds size | 768 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig147.2804.1 >prot_H-paniculata_contig147.2804.1 ID=prot_H-paniculata_contig147.2804.1|Name=mRNA_H-paniculata_contig147.2804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=256bp
MTSSFLRVDTAFLLVACVLGFGLQATVAFCPSQQLLLQSVRPADDMRARL
TTTVPSSRNGMAMGFSFTLPTFGKPKQVTKTITNVWSEELLSLLSDKSRK
INDADVMEKIERLEAAGVTFNEDYLYDGPWRVLWKTNTSWQRYFDPFNGV
ADNRAYQWYEKDGSVTNIAQAFSDKLYVTVDGQGTPASDSRELPYELNVE
VSCAWLHVLGRKIPLNFIKGKGTTFVVYNDPKLRVFRSDTGGLVVQTKAE
ETVPV* back to topmRNA from alignment at H-paniculata_contig147:19736..23614+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig147.2804.1 ID=mRNA_H-paniculata_contig147.2804.1|Name=mRNA_H-paniculata_contig147.2804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3879bp|location=Sequence derived from alignment at H-paniculata_contig147:19736..23614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGTCCACTCACAACGACAACGAACGTTACCAGTACATGCAAGACAGA
AGAAGAGTCATCTGAATCAGGGGTCGCACTGAGACGCCTCTGCATTTTGT
GCACTCCTACCAGCTGTACTCGCAGAGAGTCGGCCTGAGATACAGACGAG
GTTTTCGTGCTGTGATCCTGAAAAGGAACCCACGATGACCTCAAGTTTTC
TACGGGTTGACACAGCATTTTTGCTGGTGGCATGCGTATTAGGATTTGGC
TTGCAAGCGACGGTTGCCTTCTGCCCGAGCCAACAACTGCTGTTGCAGTC
TGTGCGACCTGCTGATGATATGCGAGCCCGTCTCACAACCACGGTTCCCT
CGTCTAGGAACGGGATGGCCATGGGCTTCTCGTTCACGCTTCCTACGTTC
GGGAAGCCAAAACAGGCGAGCGTCTCTGTTGGTGATACCTCATCTGTTGG
TTGTAAGGAGTCATTTGTTGTTCTTTTACCCGGTTAACCATTTCTATTGG
GGAGTATTAGTGCTGGTATCTAGTTATCCACTTCACAATTTTGTTTTTCT
GTCTGGTCAGTTGTACTGGCTACACTGTATCGGTAGTTGACAGGGCTCCG
CCAACCTCGTGATGGCATATTGATCACGGCGCCGATACAGTTTTCTATGT
TATGGGAAGTCGCTTGTTTGGAAGCAACTATGAGTTGCACTGCCGTGTGA
TCGGTACTGTATTCCAGCCCTTCACTGACTTAGAAGTATTGGCTGTACTC
CGACGAAAGTACCGACTTTTTGTCGCTGTGCTCTCTCGGCCATGACTATC
ATCCATCGCTTTTGAAGAAAAAGCGTGTCATTACAGTAGGTATGCCGTAC
TGTAACTGTATGGTGCAGTAGCAAAGACCTGTCACGGTACAACTACAGGT
CCTAGTATAGCTGTAGTTTAACCCCTGTACCCCCGGAGCCCGAAAAAGAA
CAACAAAAATATTTAACAAAAGTATTTGACAATCCCGCGACGAAACCGTC
ACGGAAAGGAGAGCGAATCCCTTTTAAAGACGGAGAGGCCTGATGAAGGC
TACGCAACGTAAATAATTATAGAATTACACCGCCGCCAGGCAATCTACTT
TCCTGCCGTGTCCTCGACCACGACCAGTTAACTCGCATCAGTGGCACCTC
ATACCCCCAGGTGACCAAGACTATCACGAACGTCTGGAGCGAGGAGCTGC
TTAGCTTGCTTTCTGACAAGAGTCGTAAGATCAACGACGCCGACGTTATG
GAGAAGATCGAGCGATTGGAGGTGCGTGCGAAGAGGCTGGATAATTTCTG
CGTATTTCCTCTCTTTGATCCTTTCTGCACCATCGCTTTCGCGGTAGACA
ACAAAAACCCAATCTCACTAGGTTTTCCATACAAGGGTAGAGGGGGACCT
TCCGCCGAGCTTTCGATATTTTTTGTTGCGCAGACAAGTCTCCCAGTCTG
CTGCTTTCTTGAGGATGAAGCGGTCAACGCCTCTCGCAAGATCCTTGTGT
GTAACCTCTGTTAGCCCGCCATTTGAACAACTGGGAAACGTTGAAGGCGG
CGGGCGTGACCTTCAACGAAGATTATTTATACGACGGCCCTTGGCGTGTG
CTCTGGAAGACCAACACTTCATGGCAGCGCTACTTCGACCCCTTCAACGG
CGTCGCCGACAACAGAGCTTACCAGTGGTACGAGAAGGTGCGATATATGG
ACGACCCTGCTGTCATCGCCTATGCTACCTTACATCAGCCTGGCGGTGTA
TTGAACTGGACGTTATGACAACAGCGACAAAAGCGGTTTGGGTTCTTGCC
CAATTGTCGTGTTTGTGACCACCTCTCCGTCCTCTCGAGGACGCGTAGTC
AATGGACTAACAACTGCGGCATGCCAAGCATAACTACTCCCCCCTTTGGG
TCCTCCTTTGTGAGAGACATCGGTCGTACTCCATCTGTCATGTACTCGAC
GACAGGTTAGTAGTATTCCCGTAGGAGACACGATACGCAAACTTGGGCGA
TGACTCTTCCTTCACGCAGGGCACATGTTATCTTGGAGCGTTAGGAGGAT
AGTTTCTCATTCACTGTTGAACCTTGTCCGCGTATTTGATTGCCGATGAA
GCAGGATGGATCTGTTACCAACATCGCCCAGGCATTTAGTGACAAGCTCT
ATGTGACAGTCGACGGCCAGGGTACACCTGCATCCGACAGCAGGGAATTG
CCATACGAGGTACACAGGACCGCCAATAGTTTTTGGTAGTCCCTCATCGA
CCAACGCCAACGACCACCGACCTCCTTTGATAACTCTGATATCAACTGGC
TGTTCTGTTTGCTATTTCGGTCACTGCCGCAGTTCATTTTTCTGTACCAT
TGTATGCGAATCATGAATGTGCGGCATCGTGTGTCCACAATCCTGCACCC
GCGGTTGTGAGTTGCGACTTTAAGCAGCCGTTCGCGCCGATCACATGTAC
TAATTTTGTGGTGTTTGATTCTCAGATGACGATGCGTAGGATATCGTACA
CATTCCATAGTAGCAAGGATGAATTTTGGCGGCGCTGACGGCTCTCCCCG
TGCTCTGTTACCTTGTTTTTTCGCCGTCGATTTATGCCACTACACGTTAT
AAAATGCCTACCTTGCCGGGTGCGATCAATTCGACTTGGTGCAGTTAAAC
GTGGAGGTTTCTTGCGCATGGCTGCACGTTCTGGGAAGAAAAATCCCTCT
GAACTTCATCAAGGTGAGCACCGACCGAGCTGCTTTGTAATCTGAACTGC
GGCGCTGTACCGTGTGTGTTTCCTACTTTGGCAAAGGTCGATGCCCGTCG
ATACTCGCTGCGCTCGGCCTTTATATAGGACGGAAGGTGAAGACTCATAC
GCATGTGTGAATTTTCTTCTGTACGATCTCTTCGTGCTGACCCGGTATTG
GCTGCCAGCTCTCTCGATAGCAATGGCAAGTTGAAGATACAATTATTTCG
GTGTGATATTCACCATCCTCTTGCTTCTCCCCCATAGCAGTACATATCAT
ACTCTGAAAATTGACAGGTTACCGTCCTCGTGCTATGCGTTATCCCCACC
ACGATCATTCCAGGGTAAAGGGACGACGTTCGTGGTGTACAATGATCCCA
AGCTGCGGGTGTTCCGATCTGACACTGGCGGCCTGGTAGTGCAGACGAAG
GCCGAGGAGACTGTGCCCGTCTGACGCCATTCACTTAATTTGTGCGACGC
TTCGGTACCGTGGATGGAAACGCATGGCGCTCGCCGAAGCACGTGGGGTG
GGGGAGGGGAGGGGAGGGGGCGGCGTCTATGTGTATGCCGCCTTTTATTC
TCTTCGATACATTGTGTTGGGAGAATTGTCTCTCTGGAGAGCTGGCTAGG
CTTTGTCTGCAAAATCTGCTGGAACAAAACTACGGATTATCAGTATGATT
GACAACAGCAGGTTGCACATCTGTCCAATACGAAAAATCCTACTCTTGAG
TACGGGGAACAGTGGAAGTAGAACTCGACAAAGGCGAAGAACGTACGAGC
TAGAATAGTACTTATATTTCAAAGGGTTAGAAGGTAAACAGTGATGTTTG
AAAGTTGAGGAAAGCATTAAGCTGGTCTATAGAATGTTAGAATTTCAACA
ATGGAGAAATTTTCTATTCAATACTCAGTGAGCAAAGATACGATGGGTGG
GATTTTCGTAGCAGAAAAAGTCTGTGAATTTGCCATATTTATCACTCTGC
AACAATTCGTGGAATAGCTTGCCATAGGGAACCATCAAATTGGAACGCCT
TGAAAAAACACGTTAAATTTCTCCTTTTCTTCTTCTGCTGCTGCTACTGC
CATAGAGTGCATGTGTGCGGCGCTGACGCTGAGTATAACGATCAGAGAGG
GCATGTTCTGACCCGCTGATGTAGACAGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig147:19736..23614+ >mRNA_H-paniculata_contig147.2804.1 ID=mRNA_H-paniculata_contig147.2804.1|Name=mRNA_H-paniculata_contig147.2804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at H-paniculata_contig147:19736..23614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTCAAGTTTTCTACGGGTTGACACAGCATTTTTGCTGGTGGCATG
CGTATTAGGATTTGGCTTGCAAGCGACGGTTGCCTTCTGCCCGAGCCAAC
AACTGCTGTTGCAGTCTGTGCGACCTGCTGATGATATGCGAGCCCGTCTC
ACAACCACGGTTCCCTCGTCTAGGAACGGGATGGCCATGGGCTTCTCGTT
CACGCTTCCTACGTTCGGGAAGCCAAAACAGATGACCTCAAGTTTTCTAC
GGGTTGACACAGCATTTTTGCTGGTGGCATGCGTATTAGGATTTGGCTTG
CAAGCGACGGTTGCCTTCTGCCCGAGCCAACAACTGCTGTTGCAGTCTGT
GCGACCTGCTGATGATATGCGAGCCCGTCTCACAACCACGGTTCCCTCGT
CTAGGAACGGGATGGCCATGGGCTTCTCGTTCACGCTTCCTACGTTCGGG
AAGCCAAAACAGGTGACCAAGACTATCACGAACGTCTGGAGCGAGGAGCT
GCTTAGCTTGCTTTCTGACAAGAGTCGTAAGATCAACGACGCCGACGTTA
TGGAGAAGATCGAGCGATTGGAGGTGACCAAGACTATCACGAACGTCTGG
AGCGAGGAGCTGCTTAGCTTGCTTTCTGACAAGAGTCGTAAGATCAACGA
CGCCGACGTTATGGAGAAGATCGAGCGATTGGAGGCGGCGGGCGTGACCT
TCAACGAAGATTATTTATACGACGGCCCTTGGCGTGTGCTCTGGAAGACC
AACACTTCATGGCAGCGCTACTTCGACCCCTTCAACGGCGTCGCCGACAA
CAGAGCTTACCAGTGGTACGAGAAGGCGGCGGGCGTGACCTTCAACGAAG
ATTATTTATACGACGGCCCTTGGCGTGTGCTCTGGAAGACCAACACTTCA
TGGCAGCGCTACTTCGACCCCTTCAACGGCGTCGCCGACAACAGAGCTTA
CCAGTGGTACGAGAAGGATGGATCTGTTACCAACATCGCCCAGGCATTTA
GTGACAAGCTCTATGTGACAGTCGACGGCCAGGGTACACCTGCATCCGAC
AGCAGGGAATTGCCATACGAGGATGGATCTGTTACCAACATCGCCCAGGC
ATTTAGTGACAAGCTCTATGTGACAGTCGACGGCCAGGGTACACCTGCAT
CCGACAGCAGGGAATTGCCATACGAGTTAAACGTGGAGGTTTCTTGCGCA
TGGCTGCACGTTCTGGGAAGAAAAATCCCTCTGAACTTCATCAAGTTAAA
CGTGGAGGTTTCTTGCGCATGGCTGCACGTTCTGGGAAGAAAAATCCCTC
TGAACTTCATCAAGGGTAAAGGGACGACGTTCGTGGTGTACAATGATCCC
AAGCTGCGGGTGTTCCGATCTGACACTGGCGGCCTGGTAGTGCAGACGAA
GGCCGAGGAGACTGTGCCCGTCTGAGGTAAAGGGACGACGTTCGTGGTGT
ACAATGATCCCAAGCTGCGGGTGTTCCGATCTGACACTGGCGGCCTGGTA
GTGCAGACGAAGGCCGAGGAGACTGTGCCCGTCTGA back to top
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