mRNA_H-paniculata_contig147.2805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig147.2805.1
Unique NamemRNA_H-paniculata_contig147.2805.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig147.2805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig147contigH-paniculata_contig147:24274..24856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.3044431-CDS-H-paniculata_contig147:24273..246181622929169.3044431-CDS-H-paniculata_contig147:24273..24618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 24274..24618 +
1691480758.366607-CDS-H-paniculata_contig147:24273..246181691480758.366607-CDS-H-paniculata_contig147:24273..24618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 24274..24618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.3156416-UTR-H-paniculata_contig147:24618..248561622929169.3156416-UTR-H-paniculata_contig147:24618..24856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig147 24619..24856 +
1691480758.3765523-UTR-H-paniculata_contig147:24618..248561691480758.3765523-UTR-H-paniculata_contig147:24618..24856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig147 24619..24856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig147.2805.1prot_H-paniculata_contig147.2805.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig147 24274..24618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig147.2805.1

>prot_H-paniculata_contig147.2805.1 ID=prot_H-paniculata_contig147.2805.1|Name=mRNA_H-paniculata_contig147.2805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
LPPPVSIFHHPKQSQRRIHAVVGQDQMPCHLRRLVVDYESISLQVLLFCA
WSLLHRPGTPPRPWTRCRCYHTLPPPRIQRIPPILERLLHSRRKHCMTWR
FSFSRRCQLCPLNV*
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mRNA from alignment at H-paniculata_contig147:24274..24856+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig147.2805.1 ID=mRNA_H-paniculata_contig147.2805.1|Name=mRNA_H-paniculata_contig147.2805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=583bp|location=Sequence derived from alignment at H-paniculata_contig147:24274..24856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCTCCGCCGGTGTCAATCTTTCATCACCCAAAACAGTCTCAACGTCG
GATTCATGCTGTTGTTGGTCAAGATCAGATGCCATGTCATCTTCGGCGAC
TTGTGGTCGATTACGAATCGATAAGTCTGCAAGTCCTGTTGTTCTGTGCT
TGGAGCTTGCTCCATCGCCCTGGTACACCCCCGCGTCCATGGACGCGTTG
CCGTTGCTATCACACACTACCACCGCCGCGGATCCAGCGCATTCCTCCAA
TCTTGGAGCGTTTGCTGCACTCTCGCCGAAAACACTGTATGACTTGGAGA
TTTTCTTTTTCCCGTCGTTGTCAGCTTTGCCCTCTAAATGTCTGACCGAT
GGATGATCAGTCACCGAGGCATCAATTTCCGTGACAGGTGCACATGTGAT
TAAACCCGCCTTGGTCATCTCTAGTGCATCTGGTGTTGCTGGAGGTGGAC
CCACCCCATTTTCGGCTATCTGCACCCACCATTTCCGATACAAAGCTCGT
AGAGCAGCTTGTTCCCGGGATCCAATTCGCGGAAGATTCGCTGACAGGCT
GTCAACATCTGTGTCTACCGGGCCATGTTTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig147:24274..24856+

>mRNA_H-paniculata_contig147.2805.1 ID=mRNA_H-paniculata_contig147.2805.1|Name=mRNA_H-paniculata_contig147.2805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig147:24274..24856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCCTCCGCCGGTGTCAATCTTTCATCACCCAAAACAGTCTCAACGTCG
GATTCATGCTGTTGTTGGTCAAGATCAGATGCCATGTCATCTTCGGCGAC
TTGTGGTCGATTACGAATCGATAAGTCTGCAAGTCCTGTTGTTCTGTGCT
TGGAGCTTGCTCCATCGCCCTGGTACACCCCCGCGTCCATGGACGCGTTG
CCGTTGCTATCACACACTACCACCGCCGCGGATCCAGCGCATTCCTCCAA
TCTTGGAGCGTTTGCTGCACTCTCGCCGAAAACACTGTATGACTTGGAGA
TTTTCTTTTTCCCGTCGTTGTCAGCTTTGCCCTCTAAATGTCTGACTTCC
TCCGCCGGTGTCAATCTTTCATCACCCAAAACAGTCTCAACGTCGGATTC
ATGCTGTTGTTGGTCAAGATCAGATGCCATGTCATCTTCGGCGACTTGTG
GTCGATTACGAATCGATAAGTCTGCAAGTCCTGTTGTTCTGTGCTTGGAG
CTTGCTCCATCGCCCTGGTACACCCCCGCGTCCATGGACGCGTTGCCGTT
GCTATCACACACTACCACCGCCGCGGATCCAGCGCATTCCTCCAATCTTG
GAGCGTTTGCTGCACTCTCGCCGAAAACACTGTATGACTTGGAGATTTTC
TTTTTCCCGTCGTTGTCAGCTTTGCCCTCTAAATGTCTGA
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