mRNA_H-paniculata_contig147.2807.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig147.2807.1
Unique NamemRNA_H-paniculata_contig147.2807.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig147.2807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig147contigH-paniculata_contig147:26361..28335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.24975-CDS-H-paniculata_contig147:26362..264591622929169.24975-CDS-H-paniculata_contig147:26362..26459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 26363..26459 -
1691480758.3490334-CDS-H-paniculata_contig147:26362..264591691480758.3490334-CDS-H-paniculata_contig147:26362..26459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 26363..26459 -
1622929169.2622352-CDS-H-paniculata_contig147:28144..283351622929169.2622352-CDS-H-paniculata_contig147:28144..28335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 28145..28335 -
1691480758.3579047-CDS-H-paniculata_contig147:28144..283351691480758.3579047-CDS-H-paniculata_contig147:28144..28335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig147 28145..28335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig147.2807.1prot_H-paniculata_contig147.2807.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig147 26363..28335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig147.2807.1

>prot_H-paniculata_contig147.2807.1 ID=prot_H-paniculata_contig147.2807.1|Name=mRNA_H-paniculata_contig147.2807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
GENSGNNGKWARSAERGRTREQTSSQAPKNDPQDEPWMALADLRDGQRES
WMSDRAKHDFGTVKLASVYLEEEKNRIIRLRKIKSVLASENYMGTT
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mRNA from alignment at H-paniculata_contig147:26361..28335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig147.2807.1 ID=mRNA_H-paniculata_contig147.2807.1|Name=mRNA_H-paniculata_contig147.2807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-paniculata_contig147:26361..28335- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAAAATAGCGGCAATAACGGAAAGTGGGCTCGCTCAGCCGAACGTGG
GCGTACGCGAGAGCAGACCTCGTCCCAAGCACCAAAGAACGATCCTCAGG
ACGAACCCTGGATGGCACTGGCAGACCTAAGGGACGGGCAGCGGGAGAGC
TGGATGTCGGACAGGGCCAAGCATGACTTTGGCACAGTCAAGTAAGTGAG
CTCAATAGTAATAATGCGTGTTCTCGATTCAGGCGAATTCATTGTGATGG
GTATCAATTTGGGTACCTGATCAAAAACAAATTCGCGAGCAGTTCTGTGT
AAAGGTTTCACTAATTATACATTCTGTGATAGTTGTCCTCGATTACACTA
TAATAGCACGAGTAACCTTAGTGTGCCAGAAAATACAGCTCCTAAGTACG
GCTGAAGAGTTGTAATCAACAACACCTAGTGGGCCTTCACCGTGTCATCC
GGCGCTTTGCAAATAGCCGCGACAGTTTTGTTTTGGCCAACTATTTACAT
TCTTACTCTCCGAGTATTTTAACCCCGTCGGGGCGCAACTGTTTTCCAAA
AGTCTAAATGCCACCTCCACGGGACCGACCACTGCTCTTTTTAACCGAAG
GATATATATATACCAATTAAGCAGCAATCGCTGTTTCAGAGAAGAAAATT
CAACCTGCACAATCGACTCTAGTGCTGTTTTCTAACATATCACGCAATAT
TGCACTGAAAAAACATGCCCCAAAAGCAGATCCCAGAAAACATGCCCTAA
GGGTTGAAGTACTGCGCAGGCCCGCTGCGGTACATCCCTGGTACGTGGGC
TCTAATAAATCTAAACACCATTTTCTCAATTAGGGCGGTCCATAAGACCC
CTTAGGCCATCTCACCACCCTTTTCCCACAGAAATAAAGGATAATAGCTT
TGCACTCGCTCACTTCGTTGGTGGGTGCTGCTAACGCAGAGCCAAGTTTA
TTTGAATGAACACAATCGATGAAGGCACGGTCTTCTTTTCTGAAAAGTTG
GGCTTCCTCTTTTTCTCCGAGGGGTTTCGCCTACTTTGGTGGATTCTGTA
ACTTTTTTTGGCCAGCCCGAGAAATTTTCCTGGCGTTTTGAAACCGATGA
TTTAAAAAGCATCATCCTTTGCACGGGCAGTTTTATTCAGCGTCCCTTTT
AGAACCAGAAACACCCACTTACTAATCTGGTTCCATCTGACTTAGCTGAG
CTGGCATTGTGTATGTGTGAGAGAGAGAGAAAAAGAGCCGTTTTAATTGA
GGGCGAGGGCAGCACGGTGACAAGCTCTATTTTTCGAACTAGACGCCAAA
ACGTTTCGAGTGCGAACCTGACTTTTGGCACCAACAAATTCACCATGCTC
AAATCATCGAGTAAGCTGTAATTAACCCGATACACCCAAAAACAACGGCC
AAGAAACGCCTATTCCGCAATGATCCCAACCCTAAAATCAAGAAAACTTG
TCATCAAAAAAGGATATTTCTTCCTCCCCGTGAGGTGAAACGGCTCTGTG
TGAACACGCGCGCGTTGGCAGAGTTTACATTTGACCAAACTGCATTGGCA
GAGCGCATTCGAGCAAAGCAGCAGTCGTCCTGCGCAATGCCTTGATATGG
CCGAAAACGACCAAGGTCTATATTTTCCTTGATTCTTCTTTGACATCATA
ACCCCGCTACTATACTTCGATTCATGTACATTCTGCCTGAACCTCTATTG
CATCAATCTACACAATGTTGTGTATAATACTGCCTTCGCCGATGGGACTA
ATTCCCCAGAAAAATGCTCAGGTAATCCGTGATCCTTGTTTCCGTCATGC
TACAGTCCGACAACCACGCCCGTACTCGCACTTCCGTAACTCTTCCTCGC
GTTGATATTCCGGAATTCTTCATCAGGTTAGCTTCTGTGTACCTCGAGGA
AGAGAAGAATCGGATTATTCGGCTGCGAAAAATAAAATCAGTACTGGCAT
CCGAAAATTACATGGGCACTACCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig147:26361..28335-

>mRNA_H-paniculata_contig147.2807.1 ID=mRNA_H-paniculata_contig147.2807.1|Name=mRNA_H-paniculata_contig147.2807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig147:26361..28335- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAAAATAGCGGCAATAACGGAAAGTGGGCTCGCTCAGCCGAACGTGG
GCGTACGCGAGAGCAGACCTCGTCCCAAGCACCAAAGAACGATCCTCAGG
ACGAACCCTGGATGGCACTGGCAGACCTAAGGGACGGGCAGCGGGAGAGC
TGGATGTCGGACAGGGCCAAGCATGACTTTGGCACAGTCAAGGGGAAAAT
AGCGGCAATAACGGAAAGTGGGCTCGCTCAGCCGAACGTGGGCGTACGCG
AGAGCAGACCTCGTCCCAAGCACCAAAGAACGATCCTCAGGACGAACCCT
GGATGGCACTGGCAGACCTAAGGGACGGGCAGCGGGAGAGCTGGATGTCG
GACAGGGCCAAGCATGACTTTGGCACAGTCAAGTTAGCTTCTGTGTACCT
CGAGGAAGAGAAGAATCGGATTATTCGGCTGCGAAAAATAAAATCAGTAC
TGGCATCCGAAAATTACATGGGCACTACCGTTAGCTTCTGTGTACCTCGA
GGAAGAGAAGAATCGGATTATTCGGCTGCGAAAAATAAAATCAGTACTGG
CATCCGAAAATTACATGGGCACTACC
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