mRNA_H-paniculata_contig14699.2802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14699.2802.1
Unique NamemRNA_H-paniculata_contig14699.2802.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: D7FRY5_ECTSI (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRY5_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 3.790e-78
Identity = 135/172 (78.49%), Postives = 151/172 (87.79%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEEDLSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHHALF 516
            LHRDGSV+M +S+EDLQNP ALYQ LGFKTAVGMPFKDIAT DSV+L +VP  DDK ART+LRRMQEAGVGV+APLAALEA P+ NAVAVVSLE+ A+SGGQVNLPEGAIRLAV I+GTE DLS LS ISP P++GL+NVP GVSRVHASRRVFQHLAD  +DLA+IH A F
Sbjct:  357 LHRDGSVMMPISVEDLQNPQALYQVLGFKTAVGMPFKDIATTDSVYLEQVPATDDKKARTSLRRMQEAGVGVLAPLAALEANPIANAVAVVSLEDVAKSGGQVNLPEGAIRLAVEIEGTE-DLSVLSNISPKPMVGLLNVPAGVSRVHASRRVFQHLADAKNDLAVIHLASF 527
[Close]
BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: A0A6H5KI66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI66_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 9.430e-62
Identity = 109/139 (78.42%), Postives = 121/139 (87.05%), Query Frame = 1 
Query:  100 MPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEEDLSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHHALF 516
            MPFKDIAT DSV+L +VP  DDK ART+LRRMQEAGVGV+APLAALEA P+ NAVAVVSLE+ A+SGGQVNLP+GAIRLAV IKGTE DLS LS ISP P++GL+NVP GVSRVHASRRVFQHLAD  +DLAIIHH  F
Sbjct:    1 MPFKDIATTDSVYLEQVPAADDKNARTSLRRMQEAGVGVLAPLAALEANPIANAVAVVSLEDVAKSGGQVNLPKGAIRLAVEIKGTE-DLSVLSNISPKPMVGLLNVPAGVSRVHASRRVFQHLADAKNDLAIIHHVSF 138
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BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: A0A835YGL0_9STRA (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGL0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.050e-57
Identity = 105/171 (61.40%), Postives = 135/171 (78.95%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEED--LSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHH 507
            LHRDGSV+  V+L+DL  P  LY+ LG K AVGMPFKDIAT DS+FL EVPP DD+ ARTALRR+QE GVGV+AP+ AL+A+P+PN++AVVSLE+ A +GG+V LPEG +R  +++KGTE D  L+ L T  PA +  L+  P GVSR+HA+RRVFQ L+DT+S L++IHH
Sbjct:  355 LHRDGSVLSAVTLKDLAQPDLLYRRLGCKLAVGMPFKDIATVDSIFLREVPPADDRQARTALRRLQEVGVGVLAPIEALKASPLPNSLAVVSLEDWAAAGGKVELPEGVLRAVLTVKGTESDDALAMLGTGCPA-VFALLETPAGVSRIHAARRVFQALSDTSSTLSVIHH 524
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BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: A0A7S3UZY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZY5_HETAK)

HSP 1 Score: 191 bits (486), Expect = 3.980e-54
Identity = 107/174 (61.49%), Postives = 130/174 (74.71%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEEDLS--PLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHHALF 516
            LHRDGSV+  V++  LQ P  LY+ LG KTAVGMPFKDIAT+DS++L EVP  DD AART LRR+QEAGVGV+AP AAL AAPVPNAVAVVSLEEAAQ  G V LPEGA R AV++ G E+D +   L  ++  P M L+ VP  VSR+HA+RRVF+ L  T +++ +IHH  F
Sbjct:  389 LHRDGSVLTAVTVAQLQQPDQLYRDLGCKTAVGMPFKDIATSDSLYLAEVPAADDAAARTTLRRLQEAGVGVVAPAAALAAAPVPNAVAVVSLEEAAQ--GPVALPEGAARWAVAVTGVEDDAAFGVLKALADPPAMALLKVPGDVSRLHAARRVFEQLHRTQNNVPVIHHLAF 560
[Close]
BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: A0A7S0TXQ2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TXQ2_HEMAN)

HSP 1 Score: 175 bits (443), Expect = 6.220e-49
Identity = 96/169 (56.80%), Postives = 121/169 (71.60%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEEDLSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHH 507
            LHRDGSV+ VV+ E L +P ALY  LG KTAVGMPFKD+AT+DS+ +      DDKAARTALRRMQE G+GV++  A LEA+P+ NA+A+ SLEEAA+S   V LP+GAIR A+++ G EED          P++ ++ VPEGVSRVHASRRVF+ L     D  +IHH
Sbjct:  210 LHRDGSVISVVTPESLSSPDALYYDLGCKTAVGMPFKDLATSDSILVTGTVAADDKAARTALRRMQEVGIGVISDAADLEASPIANAIALYSLEEAAKSS--VKLPKGAIRYAITVSGNEEDAVLDKLKGMDPLLLMLKVPEGVSRVHASRRVFESLKKAGLDAPVIHH 376
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BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: A0A7S0VYW6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYW6_9CRYP)

HSP 1 Score: 175 bits (444), Expect = 3.550e-48
Identity = 96/169 (56.80%), Postives = 119/169 (70.41%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEEDLSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHH 507
            LHRDGSVV VV  E L +P ALY  LG KTAVGMPFKD+AT+DS+ L    P  DKAARTALRRMQE G+GV++P A L+ +P+ NA+A+  L EAA+SG    LPEGAIR AV++ G E D       S  P++ ++ VP+GVSRVHASRRVF+HL     +  +IHH
Sbjct:  388 LHRDGSVVSVVPPEALSSPDALYHDLGCKTAVGMPFKDLATSDSILLTGPVPASDKAARTALRRMQEVGIGVISPAAVLKESPIDNAIALFDLSEAAESGA--GLPEGAIRAAVTVTGAEGDQELAELKSLDPLLIMLKVPDGVSRVHASRRVFEHLKKEGLETPVIHH 554
[Close]
BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: A0A6U4N756_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4N756_HEMAN)

HSP 1 Score: 175 bits (443), Expect = 5.250e-48
Identity = 96/169 (56.80%), Postives = 121/169 (71.60%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEEDLSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHH 507
            LHRDGSV+ VV+ E L +P ALY  LG KTAVGMPFKD+AT+DS+ +      DDKAARTALRRMQE G+GV++  A LEA+P+ NA+A+ SLEEAA+S   V LP+GAIR A+++ G EED          P++ ++ VPEGVSRVHASRRVF+ L     D  +IHH
Sbjct:  388 LHRDGSVISVVTPESLSSPDALYYDLGCKTAVGMPFKDLATSDSILVTGTVAADDKAARTALRRMQEVGIGVISDAADLEASPIANAIALYSLEEAAKSS--VKLPKGAIRYAITVSGNEEDAVLDKLKGMDPLLLMLKVPEGVSRVHASRRVFESLKKAGLDAPVIHH 554
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BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: A0A2V0NPD0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NPD0_9CHLO)

HSP 1 Score: 164 bits (414), Expect = 8.590e-46
Identity = 95/174 (54.60%), Postives = 119/174 (68.39%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEED--LSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHHALF 516
            LHRDG+V   V+   L +P ALY+ LG K  VGMPFKDIAT+D++F+ E+PP  DK AR ALRR+QE GV V++P AAL A+P+P AVA+V L EAA       LPEGA RLA+ I GTE D  L+   T+  A  + L+NV +GVSRVHASRRVF+ L    S L ++HH  F
Sbjct:   70 LHRDGTVYSAVTPAALSSPEALYRKLGAKLVVGMPFKDIATSDAIFMRELPPAGDKDARRALRRLQEIGVHVISPAAALAASPLPGAVALVPLREAAAGA---ELPEGAARLALEIDGTETDAQLAAAGTLGAA--VALLNVADGVSRVHASRRVFEALKSAGSGLPVVHHVRF 238
[Close]
BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: L1K0P1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K0P1_GUITC)

HSP 1 Score: 168 bits (426), Expect = 8.620e-46
Identity = 90/172 (52.33%), Postives = 117/172 (68.02%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEGAIRLAVSIKGTEEDLSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHHALF 516
            LHRDGSV+  VSLEDL +P  LY  LG KTAVGMPFKD+AT+DS+ L + P +D    RTALRR+QE GVGV+ P   L+A P+PNA+AV  L++    G +  LP+GAIR A++++G E D       S   +M L+ VP+ VSRVHASRRVF  L + + D  +IHH +F
Sbjct:  345 LHRDGSVISAVSLEDLASPDKLYYNLGCKTAVGMPFKDLATSDSILLQQSPAMDASKERTALRRLQEVGVGVLCPAQELQARPIPNAIAVYDLKQMPSKGAK--LPDGAIRYALTVRGDESDEELAKLKSSEAVMLLLRVPDEVSRVHASRRVFNFLKENSIDTPVIHHIVF 514
[Close]
BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Match: Q5IWW3_PROWI (Plastid hydroxymethylbutenyl 4-diphosphate synthase (Fragment) n=1 Tax=Prototheca wickerhamii TaxID=3111 RepID=Q5IWW3_PROWI)

HSP 1 Score: 155 bits (392), Expect = 7.860e-45
Identity = 91/174 (52.30%), Postives = 115/174 (66.09%), Query Frame = 1 
Query:    1 LHRDGSVVMVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAARTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSG--GQVNLPEGAIRLAVSIKGTEEDLSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLADTNSDLAIIHHALF 516
            LHRDGSV+  +SLEDL  P A Y++LG K AVGMPFKDIAT+DSV+L EVP VDD  AR ALRR+QE GV V+A   AL A+P+P+++AVVSL EA  +   G+  LP GA+RLA++I GTE +    +T      + L+    G+SRVHASRRVF+           IH   F
Sbjct:    1 LHRDGSVLSALSLEDLHKPDATYRSLGCKMAVGMPFKDIATSDSVYLTEVPAVDDAVARRALRRLQEVGVHVLAEADALVASPLPDSIAVVSLAEAVAAAREGRSLLPPGAVRLALAIDGTESEAELAATGGLDATLALLRTAPGLSRVHASRRVFEXXXXXXXXXXXIHALAF 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14699.2802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRY5_ECTSI3.790e-7878.491-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate syn... [more]
A0A6H5KI66_9PHAE9.430e-6278.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YGL0_9STRA1.050e-5761.401-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate syn... [more]
A0A7S3UZY5_HETAK3.980e-5461.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0TXQ2_HEMAN6.220e-4956.80Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0VYW6_9CRYP3.550e-4856.80Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6U4N756_HEMAN5.250e-4856.80Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A2V0NPD0_9CHLO8.590e-4654.60Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
L1K0P1_GUITC8.620e-4652.33Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
Q5IWW3_PROWI7.860e-4552.30Plastid hydroxymethylbutenyl 4-diphosphate synthas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14699contigH-paniculata_contig14699:869..2547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.4
Seed ortholog evalue7.2e-62
Seed eggNOG ortholog2880.D7FRY5
Preferred nameHDS
KEGG rclassRC01486
KEGG koko:K03526
KEGG ReactionR08689,R10859
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009627,GO:0009719,GO:0009725,GO:0009751,GO:0009814,GO:0009862,GO:0009863,GO:0009941,GO:0009987,GO:0010033,GO:0014070,GO:0016491,GO:0016725,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0023052,GO:0031967,GO:0031975,GO:0032787,GO:0032870,GO:0035690,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046429,GO:0046490,GO:0046677,GO:0048037,GO:0050789,GO:0050794,GO:0050896,GO:0051536,GO:0051539,GO:0051540,GO:0051704,GO:0051707,GO:0051716,GO:0052592,GO:0055114,GO:0065007,GO:0070887,GO:0071229,GO:0071236,GO:0071310,GO:0071407,GO:0071446,GO:0071495,GO:0071704,GO:0090407,GO:0098542,GO:1901135,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
EggNOG OGs2QSBY@2759,COG0821@1
Ec32 ortholog description1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast precursor
Ec32 orthologEc-03_003610.1
EC1.17.7.1,1.17.7.3
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size516
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14699.2802.1prot_H-paniculata_contig14699.2802.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14699 893..2547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.1235852-UTR-H-paniculata_contig14699:868..8921622929169.1235852-UTR-H-paniculata_contig14699:868..892Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14699 869..892 +
1691480758.301024-UTR-H-paniculata_contig14699:868..8921691480758.301024-UTR-H-paniculata_contig14699:868..892Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14699 869..892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.13873-CDS-H-paniculata_contig14699:892..9431622929169.13873-CDS-H-paniculata_contig14699:892..943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14699 893..943 +
1691480758.3123753-CDS-H-paniculata_contig14699:892..9431691480758.3123753-CDS-H-paniculata_contig14699:892..943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14699 893..943 +
1622929169.154825-CDS-H-paniculata_contig14699:1405..15311622929169.154825-CDS-H-paniculata_contig14699:1405..1531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14699 1406..1531 +
1691480758.3199925-CDS-H-paniculata_contig14699:1405..15311691480758.3199925-CDS-H-paniculata_contig14699:1405..1531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14699 1406..1531 +
1622929169.16808-CDS-H-paniculata_contig14699:1840..19901622929169.16808-CDS-H-paniculata_contig14699:1840..1990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14699 1841..1990 +
1691480758.3274794-CDS-H-paniculata_contig14699:1840..19901691480758.3274794-CDS-H-paniculata_contig14699:1840..1990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14699 1841..1990 +
1622929169.1895833-CDS-H-paniculata_contig14699:2382..25471622929169.1895833-CDS-H-paniculata_contig14699:2382..2547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14699 2383..2547 +
1691480758.3360329-CDS-H-paniculata_contig14699:2382..25471691480758.3360329-CDS-H-paniculata_contig14699:2382..2547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14699 2383..2547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14699.2802.1

>prot_H-paniculata_contig14699.2802.1 ID=prot_H-paniculata_contig14699.2802.1|Name=mRNA_H-paniculata_contig14699.2802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MVVSLEDLQNPMALYQTLGFKTAVGMPFKDIATADSVFLPEVPPVDDKAA
RTALRRMQEAGVGVMAPLAALEAAPVPNAVAVVSLEEAAQSGGQVNLPEG
AIRLAVSIKGTEEDLSPLSTISPAPIMGLINVPEGVSRVHASRRVFQHLA
DTNSDLAIIHHALF
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mRNA from alignment at H-paniculata_contig14699:869..2547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14699.2802.1 ID=mRNA_H-paniculata_contig14699.2802.1|Name=mRNA_H-paniculata_contig14699.2802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1679bp|location=Sequence derived from alignment at H-paniculata_contig14699:869..2547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACACCGCGATGGATCAGTCGTCATGGTCGTCTCGCTTGAGGACCTCCA
AAACCCCATGGCTCTGTACCAGACGGTTCGTTTTACTTTATAGTATGATT
TGAGAGATTCGAATACTGCTGCGGTGTAGCGGATTGGATTGATGATACAA
TTACGGCTATTGTACTGACGGGGGGGTAGTCGTTTGATTTGCTTTGTCTG
TCTTGGGATCCTTGGTGATGCACATTCGACCTTAGGTATTCGTGTGTGGC
GGTAATGGACGTACTGTAACTGTTTGCATCGTTTGCACACATCGTTTTTG
ATTCCAGTTGAAGGCACTAATTAACTTACAGGCAGTATGTCATCTGATGA
TCAGCTTGATGAAGTGCCGGAGCTATTAGAGCGCAGCGTGACAAAATACG
AGTTTGAAAGATAATTTTGTACAATCCAGCAGTGCAAGCCCCATAGCATA
TTACTTGCTTTGCCCTGGTGCCAATGACCAATTACAATAACTGGCTGCTT
GTTGATGTATGTTCTATTCGCTGATCGTGTTCTAAAGCTCGGTTTCAAGA
CTGCGGTGGGCATGCCTTTCAAGGACATCGCAACTGCTGACAGCGTGTTT
CTCCCGGAGGTACCTCCCGTTGATGACAAGGCTGCACGTACCGCCTTGCG
CCGAATGCAAGAGGTGGGGCACTCATGATGCGATCTACTCTTGATCCATT
TGCATGTCATCGCCATCGCCAACCTTGTCCTCGAGCTTTGATCGTTAGAT
ATAGTAGACAGATATATCAATGGCGATAATATATATATCAATGCATGGCA
AACACGGTAAACGTGACAAACGTGACACGCATGACGGCTTGGATGTCCAC
GGTCGGTTTAAAAACATTTGATAATCATCATGCTCAATAAATATATCTAT
TTACGGTCGCTCACATCAAACCTGCACGTCTGTCCGGCGGGGGAATTGTG
TCTACTCTCAACGTCCTTAAAGGCTGGGGTGGGTGTAATGGCCCCATTGG
CCGCCTTGGAGGCCGCGCCAGTACCCAATGCAGTTGCCGTTGTATCACTT
GAGGAGGCCGCACAGAGTGGCGGACAAGTCAATCTGCCAGAAGGGGCCAT
CAGGCTAGCTGTGTCAATCAAGGTGACTTACCGAACCGATCTTGGCTCAA
CATGTTGGGTATAGGTATTGTGCTTGTTGGGTGTCGTGTCGATTGCATGT
GTGCTTTGTTTGACCTTGTTGCACTCTAGTCTAGCTTTACTCTACTCTAG
AGCGGCGGGATCGGTGTTTGCCCTCAAATTGCAGGTCAGCATGTCGTACG
CTGTGCGGTAGTATACTGTTGCTTGCGGACGATCGATCGATAGGACACAG
CTTCCATCTTCGCCTTCAATCTGTTGTACGATCGATCGATAGGACACTTT
TTGCATACATTGTACAATTACGACTTCGCACCTGTGCCATGACTAAAATA
TATGGGTCGGTGCGAAATCTAGTTGGTTGAACTCATCGATTATTTTTTGT
ACTGCACGATACAGGGAACGGAAGAAGACCTTTCACCCTTGTCTACCATA
TCGCCAGCACCTATAATGGGCCTCATCAACGTGCCGGAGGGCGTGAGCCG
CGTGCATGCTTCCCGACGAGTGTTCCAGCACTTGGCCGACACCAATAGTG
ACCTGGCCATCATCCATCACGCCTTATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig14699:869..2547+

>mRNA_H-paniculata_contig14699.2802.1 ID=mRNA_H-paniculata_contig14699.2802.1|Name=mRNA_H-paniculata_contig14699.2802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig14699:869..2547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGTCTCGCTTGAGGACCTCCAAAACCCCATGGCTCTGTACCAGAC
GATGGTCGTCTCGCTTGAGGACCTCCAAAACCCCATGGCTCTGTACCAGA
CGCTCGGTTTCAAGACTGCGGTGGGCATGCCTTTCAAGGACATCGCAACT
GCTGACAGCGTGTTTCTCCCGGAGGTACCTCCCGTTGATGACAAGGCTGC
ACGTACCGCCTTGCGCCGAATGCAAGAGCTCGGTTTCAAGACTGCGGTGG
GCATGCCTTTCAAGGACATCGCAACTGCTGACAGCGTGTTTCTCCCGGAG
GTACCTCCCGTTGATGACAAGGCTGCACGTACCGCCTTGCGCCGAATGCA
AGAGGCTGGGGTGGGTGTAATGGCCCCATTGGCCGCCTTGGAGGCCGCGC
CAGTACCCAATGCAGTTGCCGTTGTATCACTTGAGGAGGCCGCACAGAGT
GGCGGACAAGTCAATCTGCCAGAAGGGGCCATCAGGCTAGCTGTGTCAAT
CAAGGCTGGGGTGGGTGTAATGGCCCCATTGGCCGCCTTGGAGGCCGCGC
CAGTACCCAATGCAGTTGCCGTTGTATCACTTGAGGAGGCCGCACAGAGT
GGCGGACAAGTCAATCTGCCAGAAGGGGCCATCAGGCTAGCTGTGTCAAT
CAAGGGAACGGAAGAAGACCTTTCACCCTTGTCTACCATATCGCCAGCAC
CTATAATGGGCCTCATCAACGTGCCGGAGGGCGTGAGCCGCGTGCATGCT
TCCCGACGAGTGTTCCAGCACTTGGCCGACACCAATAGTGACCTGGCCAT
CATCCATCACGCCTTATTCGGAACGGAAGAAGACCTTTCACCCTTGTCTA
CCATATCGCCAGCACCTATAATGGGCCTCATCAACGTGCCGGAGGGCGTG
AGCCGCGTGCATGCTTCCCGACGAGTGTTCCAGCACTTGGCCGACACCAA
TAGTGACCTGGCCATCATCCATCACGCCTTATTC
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