mRNA_H-paniculata_contig14673.2793.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14673.2793.1
Unique NamemRNA_H-paniculata_contig14673.2793.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: D8LEZ8_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ8_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 2.450e-80
Identity = 134/161 (83.23%), Postives = 145/161 (90.06%), Query Frame = 3 
Query:   24 MSSAPIQRSTTLANSIRSGENSSPLRPTHRNEG--GKGKGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKSVVRKE 500
            MS API RS+TLA SIRS ++SSPLRP HRN+G  G  KGGRGR KGSG I+QS+RAGLTFPV+RVARHLKEAKL++RVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLA VTIAEGGVLPNIHS+LLPKK   + E
Sbjct:    1 MSGAPIARSSTLAASIRSSDSSSPLRPVHRNKGKTGGNKGGRGRVKGSGSISQSLRAGLTFPVARVARHLKEAKLASRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLADVTIAEGGVLPNIHSILLPKKVAAKLE 161
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BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: A0A7S3UYM8_HETAK (Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM8_HETAK)

HSP 1 Score: 176 bits (447), Expect = 4.240e-52
Identity = 101/153 (66.01%), Postives = 120/153 (78.43%), Query Frame = 3 
Query:   39 IQRSTTLANSIRSGENS--SPLRPTHR-NEGGKGK-GGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKS 485
            +QR+TTLA S R+G +   SPLRP  R + GGK   GGRG+K  S    +S +AGL FPV R+ R+LK  + S RVG G+ VYLAA++EYLCAEILELAGNA RDNKK RI PRH+QLA+RNDEELNKLL GVTI++GGVLPNIH+VLLPKKS
Sbjct:    1 MQRATTLAASTRTGADDLKSPLRPKGRLSAGGKAAAGGRGKKSQS----KSSKAGLQFPVGRIGRYLKNGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTISQGGVLPNIHTVLLPKKS 149
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BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: H2A_PLAFA (Histone H2A n=56 Tax=Plasmodiidae TaxID=1639119 RepID=H2A_PLAFA)

HSP 1 Score: 175 bits (444), Expect = 4.780e-52
Identity = 87/121 (71.90%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:  132 KGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKSVVR 494
            KG  GRKK S G + S +AGL FPV R+ R+LK+ K + RVG G+ VYLAA++EYLCAEILELAGNA RDNKK RITPRHIQLA+RNDEELNK LAGVT A GGVLPNIH+VLLPKKS ++
Sbjct:    4 KGKTGRKKASKGTSNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKSQLK 124
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BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: A0A0G4EQN3_VITBC (Histone H2A n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EQN3_VITBC)

HSP 1 Score: 175 bits (444), Expect = 9.620e-52
Identity = 86/132 (65.15%), Postives = 106/132 (80.30%), Query Frame = 3 
Query:  123 GKGKGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKSVVRKEA*RGRE 518
            GKGKGGRG+K G   +++S +AGL FPV R+AR+LK+ + + RVG G+ VYLAA++EYLCAE+LELAGNA RD+KK RI PRH+QLAIRNDEELNK +  VTI+ GGVLPNIH+VLLPKK    KEA   +E
Sbjct:   22 GKGKGGRGKKAGGKNVSRSAKAGLQFPVGRIARYLKQGRYAKRVGSGAPVYLAAVLEYLCAEVLELAGNAARDHKKSRIVPRHLQLAIRNDEELNKYMQNVTISMGGVLPNIHNVLLPKKGKKAKEAAASQE 153
[Close]
BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: A0A7S0YWC3_9CRYP (Histone H2A n=2 Tax=Cryptophyceae TaxID=3027 RepID=A0A7S0YWC3_9CRYP)

HSP 1 Score: 174 bits (441), Expect = 1.490e-51
Identity = 87/125 (69.60%), Postives = 102/125 (81.60%), Query Frame = 3 
Query:  123 GKGKGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKSVVRK 497
            GKG  GRG+ KG   +++S +AGL FPV RV R+LK+ K ++R+G G+ VYLAA+MEYL AE+LELAGNA RDNKK RI PRH+QLA+RNDEELNKLL GVTIA GGVLPNIHSVLLPKKS   K
Sbjct:   10 GKGAAGRGKSKGGKAVSRSKKAGLQFPVGRVHRYLKQGKYASRIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIAAGGVLPNIHSVLLPKKSKKEK 134
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BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: A0A7S4U9Z2_GUITH (Histone H2A n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U9Z2_GUITH)

HSP 1 Score: 172 bits (435), Expect = 1.160e-50
Identity = 86/121 (71.07%), Postives = 99/121 (81.82%), Query Frame = 3 
Query:  123 GKGKGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKS 485
            GKG  GRG+ KG   +++S +AGL FPV RV R+LK  K + RVG G+ VYLAA++EYL AE+LELAGNA RDNKK RI PRH+QLA+RNDEELNKLL GVTIA GGVLPNIHSVLLPKKS
Sbjct:    6 GKGAAGRGKSKGGKSVSRSKKAGLQFPVGRVHRYLKNGKYATRVGAGAPVYLAAVLEYLSAEVLELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKKS 126
[Close]
BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: A0A6V1MPN2_HETAK (Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MPN2_HETAK)

HSP 1 Score: 172 bits (437), Expect = 1.280e-50
Identity = 96/151 (63.58%), Postives = 113/151 (74.83%), Query Frame = 3 
Query:   39 IQRSTTLANSIRSGENS--SPLRPTHRNEGGKGKGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKS 485
            +QR+TTLA S +SG     SPLRP  R  G K             +T+S++AGL FPV+RV+R+LK+ + S +VG G+ +YLAA+MEYL AE+LELAGNA RDNKKK I PRHI LAIRNDEELNKLL GVTIA GGVLPNIHSVLLPKKS
Sbjct:    1 MQRATTLAASTKSGGTGEKSPLRPKSRVAGAK-----AXXXXKKSVTKSMKAGLQFPVARVSRYLKQGRYSKKVGVGAGIYLAAVMEYLSAEVLELAGNAARDNKKKTINPRHITLAIRNDEELNKLLGGVTIASGGVLPNIHSVLLPKKS 146
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BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: A0A0L0FI70_9EUKA (Histone H2A n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FI70_9EUKA)

HSP 1 Score: 171 bits (434), Expect = 1.640e-50
Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:  123 GKGKGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKS 485
            GKGKGG+G K      T+S RAGL FPV R+ RHL++   + RVG G+ VYLAA++EYL AEILELAGNA RDNKK RI PRH+QLA+RNDEELNKLL+GVTIA+GGVLPNIH+VLLPKKS
Sbjct:    3 GKGKGGKGGKSSGKSKTRSSRAGLQFPVGRIHRHLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIHAVLLPKKS 123
[Close]
BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.250e-50
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:  123 GKGKGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKS 485
            GKGKGGRG KK +   T S +AGL FPV R+ R+L++ K + R+G G+ VYLAA++EYLCAEILELAGNA RDNKK RI PRHI LA++NDEELNKLL GVTIA GGVLPNIH++LLPKKS
Sbjct:    3 GKGKGGRGEKKST---TASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKS 120
[Close]
BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.250e-50
Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:  123 GKGKGGRGRKKGSGGITQSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELAGNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLLPKKS 485
            GKGKGGRG KK +   T S +AGL FPV R+ R+L++ K + R+G G+ VYLAA++EYLCAEILELAGNA RDNKK RI PRHI LA++NDEELNKLL GVTIA GGVLPNIH+VLLPKKS
Sbjct:    3 GKGKGGRGGKKST---TSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKS 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14673.2793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ8_ECTSI2.450e-8083.23Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A7S3UYM8_HETAK4.240e-5266.01Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=282... [more]
H2A_PLAFA4.780e-5271.90Histone H2A n=56 Tax=Plasmodiidae TaxID=1639119 Re... [more]
A0A0G4EQN3_VITBC9.620e-5265.15Histone H2A n=1 Tax=Vitrella brassicaformis (strai... [more]
A0A7S0YWC3_9CRYP1.490e-5169.60Histone H2A n=2 Tax=Cryptophyceae TaxID=3027 RepID... [more]
A0A7S4U9Z2_GUITH1.160e-5071.07Histone H2A n=2 Tax=Guillardia theta TaxID=55529 R... [more]
A0A6V1MPN2_HETAK1.280e-5063.58Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A0L0FI70_9EUKA1.640e-5071.07Histone H2A n=1 Tax=Sphaeroforma arctica JP610 Tax... [more]
A0A448ZH28_9STRA2.250e-5070.25Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U2JFS4_9STRA2.250e-5071.07Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14673contigH-paniculata_contig14673:182..5133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.3
Seed ortholog evalue1.5e-64
Seed eggNOG ortholog2880.D8LEZ8
Preferred nameH2AFY
KEGG koko:K11251,ko:K16617
KEGG Pathwayko04217,ko04974,ko05034,ko05322,map04217,map04974,map05034,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000182,GO:0000228,GO:0000775,GO:0000785,GO:0000786,GO:0000790,GO:0000792,GO:0000793,GO:0000803,GO:0000805,GO:0000976,GO:0000977,GO:0000979,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001739,GO:0001740,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0004857,GO:0004860,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006342,GO:0006355,GO:0006356,GO:0006357,GO:0006469,GO:0006996,GO:0007063,GO:0007088,GO:0007275,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007549,GO:0008104,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010385,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0015630,GO:0016043,GO:0016458,GO:0016479,GO:0019207,GO:0019210,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0030234,GO:0030291,GO:0030856,GO:0030858,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033127,GO:0033128,GO:0033365,GO:0033673,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034502,GO:0034613,GO:0034622,GO:0034728,GO:0040029,GO:0042325,GO:0042326,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0044877,GO:0045184,GO:0045595,GO:0045597,GO:0045604,GO:0045606,GO:0045616,GO:0045618,GO:0045682,GO:0045684,GO:0045786,GO:0045787,GO:0045814,GO:0045815,GO:0045840,GO:0045859,GO:0045876,GO:0045892,GO:0045931,GO:0045934,GO:0045936,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051348,GO:0051569,GO:0051572,GO:0051641,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060322,GO:0060341,GO:0061085,GO:0061086,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070199,GO:0070727,GO:0071103,GO:0071168,GO:0071169,GO:0071824,GO:0071840,GO:0071900,GO:0071901,GO:0072594,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098687,GO:0098772,GO:1901363,GO:1901836,GO:1901837,GO:1901987,GO:1901988,GO:1902275,GO:1902679,GO:1902749,GO:1902750,GO:1902882,GO:1902883,GO:1902884,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904814,GO:1904815,GO:1905268,GO:1990837,GO:1990841,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.Histone H2A
EggNOG OGsCOG5262@1,KOG1756@2759
Ec32 ortholog descriptionHistone H2A variant
Ec32 orthologEc-21_006160.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko04147
Exons5
Model size834
Cds size483
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.6879563-UTR-H-paniculata_contig14673:181..5091622929167.6879563-UTR-H-paniculata_contig14673:181..509Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14673 182..509 -
1691480757.7625206-UTR-H-paniculata_contig14673:181..5091691480757.7625206-UTR-H-paniculata_contig14673:181..509Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14673 182..509 -
1622929167.7767954-UTR-H-paniculata_contig14673:5110..51331622929167.7767954-UTR-H-paniculata_contig14673:5110..5133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14673 5111..5133 -
1691480757.8250022-UTR-H-paniculata_contig14673:5110..51331691480757.8250022-UTR-H-paniculata_contig14673:5110..5133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14673 5111..5133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.7012098-CDS-H-paniculata_contig14673:509..7221622929167.7012098-CDS-H-paniculata_contig14673:509..722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 510..722 -
1691480757.7772598-CDS-H-paniculata_contig14673:509..7221691480757.7772598-CDS-H-paniculata_contig14673:509..722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 510..722 -
1622929167.7166266-CDS-H-paniculata_contig14673:1032..10921622929167.7166266-CDS-H-paniculata_contig14673:1032..1092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 1033..1092 -
1691480757.7867928-CDS-H-paniculata_contig14673:1032..10921691480757.7867928-CDS-H-paniculata_contig14673:1032..1092Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 1033..1092 -
1622929167.7313533-CDS-H-paniculata_contig14673:1610..16591622929167.7313533-CDS-H-paniculata_contig14673:1610..1659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 1611..1659 -
1691480757.7980757-CDS-H-paniculata_contig14673:1610..16591691480757.7980757-CDS-H-paniculata_contig14673:1610..1659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 1611..1659 -
1622929167.7482688-CDS-H-paniculata_contig14673:2455..25391622929167.7482688-CDS-H-paniculata_contig14673:2455..2539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 2456..2539 -
1691480757.8069098-CDS-H-paniculata_contig14673:2455..25391691480757.8069098-CDS-H-paniculata_contig14673:2455..2539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 2456..2539 -
1622929167.764794-CDS-H-paniculata_contig14673:5033..51101622929167.764794-CDS-H-paniculata_contig14673:5033..5110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 5034..5110 -
1691480757.8158693-CDS-H-paniculata_contig14673:5033..51101691480757.8158693-CDS-H-paniculata_contig14673:5033..5110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14673 5034..5110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14673.2793.1prot_H-paniculata_contig14673.2793.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14673 510..5110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14673.2793.1

>prot_H-paniculata_contig14673.2793.1 ID=prot_H-paniculata_contig14673.2793.1|Name=mRNA_H-paniculata_contig14673.2793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MSSAPIQRSTTLANSIRSGENSSPLRPTHRNEGGKGKGGRGRKKGSGGIT
QSVRAGLTFPVSRVARHLKEAKLSNRVGKGSAVYLAAIMEYLCAEILELA
GNACRDNKKKRITPRHIQLAIRNDEELNKLLAGVTIAEGGVLPNIHSVLL
PKKSVVRKEA*
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mRNA from alignment at H-paniculata_contig14673:182..5133-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14673.2793.1 ID=mRNA_H-paniculata_contig14673.2793.1|Name=mRNA_H-paniculata_contig14673.2793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4952bp|location=Sequence derived from alignment at H-paniculata_contig14673:182..5133- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTACGCCATAACTCCAGCAACGATGTCTTCCGCTCCCATTCAACGCTCC
ACGACTCTGGCGAACTCTATTCGCTCCGGAGAAAACTCTTCTCCGCTAAG
GTAACGATACAGGATGACATTGTTTTCGTCGCAAACGAATTGATCCTGGC
GAACCACCTACAAGTCGTATTCCGACCACTTACTATCTAAGATGTTCGAT
TGATACCCATTCCAATTTTAGAAAAGAGGGGCAAAACAGGTTGAGACAGA
GGGCATGTCGAGACTGGATCTGTCGGCAAGGGTTAGGCCATGAGTAGAAG
TTGCGTGACTGACCCATTTGTTGAATTCCCACTGGTGCAGCTATCACTGC
ACGCACTGCCACACCTGGCAATGCATACACTGCTTCCTTGGAGCAAGATT
GGTTGGGGCTCGTTTCAAAAATCCAAAAAAGCGCAAATTTGCACAGGGGG
CATTTGGCGGTAAATTAAACGTCGATAGAAAGTTGCTGTCTGCTATCTGT
AGCATATGGTGATGGGCCTGCACGTGTCATACATAGTTATCTCCCTCCTA
CTCGCCGCTTGTACGCTTGCCGACTCCCAAGAATGCGCATGCAGGTAATA
ATCATCCTGTTCGCTAAAACGGCTGGTTTTTACTTCGAAAACCAAAAGTT
TGCCACTAGCCTCTGGTCTGTCTGTCCCTTCTCGAGTGAAATTTACAAAT
TTACCGTTCGTTCGTCGGTCGTACATGCAATATTTTCAAAAAAGAGGAAA
TTACAAACTTGCACGGACAGTTCATGATTCTGTGCTACGGTTATTTTGAT
GCCCGACGATTACTTGCGATTGCTGTGACTGTTGGAAGCCACCAGCTACC
AATAAATGCGTTGTATGTGTACAGTACCGACTGATAGTTGGAAAGACATG
TTGCCGCCGATATGTAAAGTCGGACACACTGCACGGACTGTCTTTTACAT
CACTACTGACTCCGCCAAGGCATACCGTGCCTGTGAAACATGCCAAGCGA
GATACCTGGCGAGGGCACAAGGTATTTATTGGTTCAGCACGCCCGACCGT
GCCGTCCTTATGGTCACACTTCATACTCCATGCTTTATCCTCGTGTCTCC
ATTTCTACAAGAAGCAACATGAACTCGCGCAGGATAGCTCACTCTCTGTT
CACTGTGACTCTACGATCGGATGTATGTCTGAAGATTCGTTTTTGGAAAT
TACTTGGGTATAAAATCAGTAGATGATTCTGAAATGGTCATCACTATCGC
TGCCACACCACCTTCTTACAGTGTATTATTATCATTCGGAATTGTACTCC
AATGACTGTACTGCTTTCTTTCGGGGCGCATGTGTTGCTCATGTATTTAT
TGAGCAAAAGTGACTGGCAGACTCGTACAGCTTTATCGTAAGCTAATAGC
TCCGCAAATGGTTTTGGTCACCTTATTCAAGGTATTGAATATACTGTACT
CAACAAACGGAACGTCACCAAATTTTTGTGTCGTACTACTATACTAATAG
ATACCCCACCCGAGTGATAATCATACTATATACAAGGATCGGAGTCGACC
ATTCGGCTGGCTTGGGCAAATTGTGCGGAATGGATGTGAGATAAAATGAA
GGTAGAGTTTAGGGCATGCCAAGTACAAGTGAATTAGAGTGGGATTGTAT
TTGGATACAGCAGAGGACGGACGAAGGCCAAGAAAATGGATTTGAAAGTC
TACAAGCAGTCCATGCCGGCGTTTTTTTGCTCTTGTGCGTACGTTTGTGT
GTTGTGTAGTGTTTTGGCCATCGACACTGCCTTCTGTACACATGCGTGCT
GCTGCGCATCTATCGTAACTTCACGGTAAGCTAATAATGTATGCAGCAAG
TAGTATAGCGCGACGCACGTAATGTCGCGATGAAATCATGAGTATAGAGC
TCTATCATGTCAGTCGCATCAGCATGAACGAACTTGGTATGATCCTGCTG
AATGTAATCGAGAGCGGAGTCGGTCGTTCTGCTGTCTGCGGAAGATCCAG
CGACCGTGAAACGTTTGTCGACGAACGGGAACGTAGCAGAGTGAAGGGCG
TGTAAATTATGCGGGCAGGAGGCGCAAAAATGCGGCAAGGGAGCAAGGAA
GAAAGGATGGTATGTGCCACACAGTGTACGCGTACAGGTCCCCCTCGTGT
TTGTTTAGTGTGTGGGCGACACACACACGGCATACAGGAGAATGCACAGC
TTGCCAGGATTCCCCAGCCAAATATCGTAACAGCTGGGGCACCCCACGCC
ACAGCAGACAGTCGGCTCCCACGGCCGATTGTCAACAACAACATCGACAC
AGACTCCCACAGACAGTTCATCAACCCGGACAAATTCCAAAGGAACAACG
CCGAGGCTGTGAGTAAAACAAAGGCGTCGGCCACGAAAAAGGCAACCCCC
CGACAGGTGCCACTCTCGCGCGCAGCGCTCCAGGGCCCAAACGTTAAACT
AACTAGGTATATACATGTTACTCGTTACCCTCTCTGAGATGTGTACTTTA
TGGCGCAATTCATACACGTATACGCCAATATCGCATTCAGTCTTAAACAT
TGAACATGCGTCATCATTCCTTGTCTCGTTTGGTCGTTTTTTAGGCCGAC
CCACCGCAACGAGGGAGGTAAGGGCAAGGGTGGCCGCGGCAGGAAGAAGG
GCTCTGGCGGGATCACTCAGTCCGTCAGGTAAATTTCCCCCATGTTTGTT
TTTGTCTAGTTTTGGATTCTGCTGTCTGTCCGATGTGCTGTGTCGTGTTG
CTGTTGAGACGATGGTGCAGGGTTCCCTTAAAGAGGCGGCAGCCTGCTGG
TAAGAATAGCCGCCTTGTCCAATACTTGAGCCCAATTACTCAGACCTGCG
GTGAAATTATTCAAGTTCGCACAGGCGTAGCAGGACAGTGCTGAGCTATG
TTTCTGCTTTTGAATAGTAATTGGAACAGTAAGACTAGCCAGCCTGTCCC
GAGGCCTTGAGGCAAACAAAATTAGCTGTGATGCTACTGTGCGGTAAATT
TTTATGTGCACTTATAGTCACCACGATCGATATGTCTCGATGTTTTTTTC
TCTTGGGAAGTTAGTAGTGATTGGTAAGGTGGCGGCGTTGCGCATGCTTT
CGATTCGTCCAGGACCCCCCAAGTCTCACCCAGATATTGTTAAAAGTGTG
TGTGTAAACAGGATCGCGCACAAAGTTCGCGCAGGTCGGATGGTGAGTAG
TCGTTGGAATACGGTAATATTTAGTTTATATGCCTCATATTTGAATCCAT
TAGATACATCGCACGCGTTTTTATGTCATCTACACGGTATGACATCATCC
AATCACCGCTGTTTGTACGTACACCTCGTTATCTCGATGTTGTTGACAGC
CGACGAATCGCCGTCGTGTAATCGCACCTGCACTGCCTCCGTTTGTGTTG
CTCTGCTGCATCTTGGTGATTCATGTCGTCGATGTATGTTACATACCTCT
TCACTGTGGCCGGCCATTGCTCAGGGCTGGACTGACCTTCCCGGTGTCTC
GTGTCGCACGGCACCTCAAGGAGGTGAGAAGTTGCTTGCTTTCATGCTTG
CTTTTATGCTTGCATTTCCCATGGATTTTTCTCAAGTGAGGAGAAATTAT
TTGTGAGCATGATGACTTGAGCGCCGTCAGTTTTTACGTTGGCGAGCGAG
TGGGACGGCTGTTCCCACCGCGTGGTAGTTAAGCCACGAATCGAGGCATT
GCACTCCAGACCGCGCGATCAATGGGGGTCTAGTAGACCTTCAGACACCC
AACGCCAAGACTCAGAGTCGATGTGGTCGATGTGGGATGAATCAGTTTCT
TTTGGGGTTGATGAAGTGCGACCAATTAGTGGTTGAGCGTGTTAGACAGT
AGTGTTGTATGATGCATCGTATTTTATGTTTTTGTTTCGTGTGGATGGCT
CGTCTGGAACATACTCTCCTCACCAGACCGAGCGCCTCCCCCCGTTCCCC
TATGTTTATTGCGATGTTCTCGTAGGTTTGAACATTCTTTTACTGTCGCC
TTTTGTTATTGTTTTTGTTTGTCTTGCCACAATGATCGCAGGCAAAGCTT
AGCAACCGTGTAGGAAAGGGGAGCGCTGTGTATCTGGCTGCCATCATGGA
GGTTTGTAACCCTTTCCGCAACGTCAGAGTGTACGCCGATGTTTACACTC
GCGCCTTCATGAATTGTCGAGAATTATTCATATCCCTGGTTGTGGAATGC
GCTATTAGATACGCTGACTCATAAGTACCCGATTTTTAGCTGCGTTATTA
CCACTGGTCCATACATACAATTTTGGTGCCTGTGTTATTGCACTCTTGAA
CACGGCAACTGAAACAGCTCGCGTTCCGCTCTCGCCAGCTTTTTTTCCTT
CTTCAGATTGGAAAATGGCACCAAAGCAATTTGTTTTAATCTTCTCGTAC
TTGCCCTCCAGTACCTGTGCGCCGAGATCCTGGAGCTGGCGGGAAATGCG
TGCCGCGACAACAAGAAGAAGCGTATCACTCCCCGCCACATTCAGCTCGC
CATCCGCAACGACGAAGAGCTGAACAAGCTTCTCGCGGGAGTTACTATAG
CTGAGGGAGGCGTCCTGCCCAACATCCACTCCGTCTTGCTGCCCAAGAAA
TCCGTTGTTCGGAAGGAGGCCTAGCGTGGCCGAGAGACCGCGTGCTGGTT
TAGGAAAGAGAGCTGTTTAGTCGTGTTGAATATAAATGCGGTACATAGAG
GATAGCCGCTTGTTGGTCCCTCTTTCCGTTTTGTTTTCGTTTCGCGAAGA
GGAGCTGAGAGGGCTGTTCGTTTTGCACTCAGAAACTCTATACACTTGGT
CATCATCTTGCGAGCTGTTGTGAATGAATGCTGTCGTTACGGGGTGGTAG
ATATTATGTAGCAAATCCACGAACACCTTGGGAAGACATGATCAGCTTGC
ACTCACTTTGTTTACGAATTGTAAGAATGGAAAATAGTTAATGAGTGTGA
GT
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Coding sequence (CDS) from alignment at H-paniculata_contig14673:182..5133-

>mRNA_H-paniculata_contig14673.2793.1 ID=mRNA_H-paniculata_contig14673.2793.1|Name=mRNA_H-paniculata_contig14673.2793.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig14673:182..5133- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCCGCTCCCATTCAACGCTCCACGACTCTGGCGAACTCTATTCG
CTCCGGAGAAAACTCTTCTCCGCTAAGATGTCTTCCGCTCCCATTCAACG
CTCCACGACTCTGGCGAACTCTATTCGCTCCGGAGAAAACTCTTCTCCGC
TAAGGCCGACCCACCGCAACGAGGGAGGTAAGGGCAAGGGTGGCCGCGGC
AGGAAGAAGGGCTCTGGCGGGATCACTCAGTCCGTCAGGCCGACCCACCG
CAACGAGGGAGGTAAGGGCAAGGGTGGCCGCGGCAGGAAGAAGGGCTCTG
GCGGGATCACTCAGTCCGTCAGGGCTGGACTGACCTTCCCGGTGTCTCGT
GTCGCACGGCACCTCAAGGAGGGCTGGACTGACCTTCCCGGTGTCTCGTG
TCGCACGGCACCTCAAGGAGGCAAAGCTTAGCAACCGTGTAGGAAAGGGG
AGCGCTGTGTATCTGGCTGCCATCATGGAGGCAAAGCTTAGCAACCGTGT
AGGAAAGGGGAGCGCTGTGTATCTGGCTGCCATCATGGAGTACCTGTGCG
CCGAGATCCTGGAGCTGGCGGGAAATGCGTGCCGCGACAACAAGAAGAAG
CGTATCACTCCCCGCCACATTCAGCTCGCCATCCGCAACGACGAAGAGCT
GAACAAGCTTCTCGCGGGAGTTACTATAGCTGAGGGAGGCGTCCTGCCCA
ACATCCACTCCGTCTTGCTGCCCAAGAAATCCGTTGTTCGGAAGGAGGCC
TAGTACCTGTGCGCCGAGATCCTGGAGCTGGCGGGAAATGCGTGCCGCGA
CAACAAGAAGAAGCGTATCACTCCCCGCCACATTCAGCTCGCCATCCGCA
ACGACGAAGAGCTGAACAAGCTTCTCGCGGGAGTTACTATAGCTGAGGGA
GGCGTCCTGCCCAACATCCACTCCGTCTTGCTGCCCAAGAAATCCGTTGT
TCGGAAGGAGGCCTAG
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