mRNA_H-paniculata_contig14671.2792.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14671.2792.1
Unique NamemRNA_H-paniculata_contig14671.2792.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14671.2792.1 vs. uniprot
Match: A0A6H5JP19_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP19_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.360e-9
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 FWRTYGTQNIRLLSEVARNVLGAPASSASLEQDFGEAGRLINR-RGSLDPACVEMVMFLHGVYNYIPREIPKLSNDEAKDAIP 249
            +WR +G ++   L  VA+ V G PAS+  +E+DF  A   + R R SLDPA +EM ++L   ++ IP +IPKL +     AIP
Sbjct:  530 YWRLHGKKHPFALRLVAQAVYGVPASAGVVERDFSIADLFMPRKRASLDPAYLEMQLYLRAHFDSIPMDIPKLDDASVAAAIP 612
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BLAST of mRNA_H-paniculata_contig14671.2792.1 vs. uniprot
Match: A0A2S2PJQ9_SCHGA (Putative AC transposase (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PJQ9_SCHGA)

HSP 1 Score: 51.6 bits (122), Expect = 4.250e-6
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    7 WRTYGTQNIRLLSEVARNVLGAPASSASLEQDFGEAGRLIN-RRGSLDPACVEMVMFLHGVY 189
            W    +    LLS++A+ +LG PASSAS E+ F  AGR+I  RR +L    V+ +MFLH  Y
Sbjct:   94 WWEQNSSRFPLLSQLAKKILGIPASSASSERCFSTAGRIIEKRRTNLKGETVDSLMFLHDHY 155
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BLAST of mRNA_H-paniculata_contig14671.2792.1 vs. uniprot
Match: G4Z7A8_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z7A8_PHYSP)

HSP 1 Score: 48.1 bits (113), Expect = 3.080e-5
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:   37 LLSEVARNVLGAPASSASLEQDFGEAGRLINR-RGSLDPACVEMVMFLHGVYNYIPR-EIPKLSNDEAKDAIP 249
            LL  VAR +   P+SSA +E+DFG +G+++   R S   A ++M  FLH   +++   + PKL   E  + IP
Sbjct:    3 LLPMVARILFAVPSSSAQIERDFGNSGKMVTALRASTSTANIDMACFLHQHRSFVDVCQCPKLKASEVDEHIP 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14671.2792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JP19_9PHAE3.360e-940.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A2S2PJQ9_SCHGA4.250e-645.16Putative AC transposase (Fragment) n=1 Tax=Schizap... [more]
G4Z7A8_PHYSP3.080e-536.99Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14671contigH-paniculata_contig14671:5407..5655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929167.6412423-CDS-H-paniculata_contig14671:5406..56551622929167.6412423-CDS-H-paniculata_contig14671:5406..5655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14671 5407..5655 -
1691480757.74737-CDS-H-paniculata_contig14671:5406..56551691480757.74737-CDS-H-paniculata_contig14671:5406..5655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14671 5407..5655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14671.2792.1prot_H-paniculata_contig14671.2792.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14671 5407..5655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14671.2792.1

>prot_H-paniculata_contig14671.2792.1 ID=prot_H-paniculata_contig14671.2792.1|Name=mRNA_H-paniculata_contig14671.2792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
TFWRTYGTQNIRLLSEVARNVLGAPASSASLEQDFGEAGRLINRRGSLDP
ACVEMVMFLHGVYNYIPREIPKLSNDEAKDAIP
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mRNA from alignment at H-paniculata_contig14671:5407..5655-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14671.2792.1 ID=mRNA_H-paniculata_contig14671.2792.1|Name=mRNA_H-paniculata_contig14671.2792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig14671:5407..5655- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTCTGGCGTACGTACGGAACGCAGAATATCAGACTCCTGAGTGAGGT
GGCGCGCAACGTGTTGGGCGCACCAGCCTCGTCAGCGAGTTTGGAGCAAG
ACTTCGGCGAAGCAGGCAGGCTCATTAACCGTCGAGGTTCCCTGGATCCT
GCGTGCGTTGAGATGGTGATGTTCCTCCATGGTGTGTATAACTATATCCC
GAGGGAAATCCCCAAGCTTAGCAATGACGAGGCCAAAGACGCCATCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig14671:5407..5655-

>mRNA_H-paniculata_contig14671.2792.1 ID=mRNA_H-paniculata_contig14671.2792.1|Name=mRNA_H-paniculata_contig14671.2792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig14671:5407..5655- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTCTGGCGTACGTACGGAACGCAGAATATCAGACTCCTGAGTGAGGT
GGCGCGCAACGTGTTGGGCGCACCAGCCTCGTCAGCGAGTTTGGAGCAAG
ACTTCGGCGAAGCAGGCAGGCTCATTAACCGTCGAGGTTCCCTGGATCCT
GCGTGCGTTGAGATGGTGATGTTCCTCCATGGTGTGTATAACTATATCCC
GAGGGAAATCCCCAAGCTTAGCAATGACGAGGCCAAAGACGCCATCCCTA
CTTTCTGGCGTACGTACGGAACGCAGAATATCAGACTCCTGAGTGAGGTG
GCGCGCAACGTGTTGGGCGCACCAGCCTCGTCAGCGAGTTTGGAGCAAGA
CTTCGGCGAAGCAGGCAGGCTCATTAACCGTCGAGGTTCCCTGGATCCTG
CGTGCGTTGAGATGGTGATGTTCCTCCATGGTGTGTATAACTATATCCCG
AGGGAAATCCCCAAGCTTAGCAATGACGAGGCCAAAGACGCCATCCCT
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