mRNA_H-paniculata_contig14662.2787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14662.2787.1
Unique NamemRNA_H-paniculata_contig14662.2787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14662.2787.1 vs. uniprot
Match: A0A6H5K335_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K335_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 8.570e-60
Identity = 136/241 (56.43%), Postives = 160/241 (66.39%), Query Frame = 1 
Query:    1 SMKEMMKAMATTAQSENTGDLDGSQAALCALFRRENLSPDRVSCAALMAQTCSTWDGLFHPKGGFRAVAERLVDSIHASGGRVLTSARVTSVLLEDGTAVGVSILPHTSKHKNXXXXXXXXXXXXXSTAVNVRI-GKG-GSVISSTGIIDTFHHLVPLSSPLP------SPVRAAAXXXXXXXXXXXXXXXXTGV-----VEPAGYRDLRAARPRVHLCVGLQGNWMEDLEGTGAYFHHVS 684
            S+ EMMKAM  T Q E   DL+ +QAALCA+FR ENL+P RVSCAALM QT S W GL+HP+GGFRA+AE LVDS+HASGGRVLT A+ TSV++    A GV+++      +    XXXXXXXXXX   VNV + G G GSVISS GIIDTF  L+P  SPL       S   AAA                 G      ++PAG+R LRAARPRVHLCVGLQGNW+EDL+GT +Y HHVS
Sbjct:  393 SVSEMMKAMLKT-QPEGNDDLEAAQAALCAMFRSENLAPSRVSCAALMGQTSSAWGGLYHPRGGFRAIAEELVDSVHASGGRVLTRAKATSVIVGRERAEGVTVV------RESGGXXXXXXXXXXXXXVNVMVAGDGLGSVISSIGIIDTFRGLLPRKSPLTTGAASGSATTAAAGDGPAAAGKTGETVTALGEKDGEGLDPAGFRILRAARPRVHLCVGLQGNWLEDLDGTSSYVHHVS 626
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BLAST of mRNA_H-paniculata_contig14662.2787.1 vs. uniprot
Match: A0A835Z712_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z712_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.780e-6
Identity = 39/98 (39.80%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  388 VNVRIGKGGSVISSTGIIDTFHHLVPLSSPLPSPVRAAAXXXXXXXXXXXXXXXXTGVVEPAGYRDLRAARPRVHLCVGLQGNWMEDLEGTGAYFHHV 681
            + VR+ +GG V+S+ G I+TF  L+       S   A A                 G   PAG+  LRAARPR+HLCVGL GNW E L+ T A +  V
Sbjct:  477 LRVRVREGGCVVSALGAIETFETLL-------SDDDAKAH----------------GGRFPAGFGALRAARPRLHLCVGLAGNWDEALDATPADYLQV 551
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BLAST of mRNA_H-paniculata_contig14662.2787.1 vs. uniprot
Match: A0A1Z4L6N0_NOSLI (Uncharacterized protein n=1 Tax=Nostoc linckia NIES-25 TaxID=1091006 RepID=A0A1Z4L6N0_NOSLI)

HSP 1 Score: 57.8 bits (138), Expect = 4.610e-6
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:  166 DGLFHPKGGFRAVAERLVDSIHASGGRVLTSARVTSVLLEDGTAVGVSILPHTSKHKNXXXXXXXXXXXXXSTAVNVRIGKGGSVISSTGIIDTFHHLVPLSSPL 480
            +G ++P GG   +A+ +V +I  SGG VLT  RVT +LL+ GTAVGV    HT+K +                  ++ I     V+S  G  +T+  L+P S PL
Sbjct:  222 NGGWYPVGGAEGIAQSIVPAIERSGGIVLTQRRVTEILLDSGTAVGVKA-QHTAKRQ---------------AEADLEIYHAPIVVSGAGAFNTYLKLIPSSYPL 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14662.2787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K335_9PHAE8.570e-6056.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z712_9STRA3.780e-639.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z4L6N0_NOSLI4.610e-635.24Uncharacterized protein n=1 Tax=Nostoc linckia NIE... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14662contigH-paniculata_contig14662:3589..6514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size720
Cds size717
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14662.2787.1prot_H-paniculata_contig14662.2787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14662 3592..6514 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.675638-UTR-H-paniculata_contig14662:3588..35911622929166.675638-UTR-H-paniculata_contig14662:3588..3591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14662 3589..3591 +
1691480757.3681512-UTR-H-paniculata_contig14662:3588..35911691480757.3681512-UTR-H-paniculata_contig14662:3588..3591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14662 3589..3591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.696617-CDS-H-paniculata_contig14662:3591..37851622929166.696617-CDS-H-paniculata_contig14662:3591..3785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14662 3592..3785 +
1691480757.3771386-CDS-H-paniculata_contig14662:3591..37851691480757.3771386-CDS-H-paniculata_contig14662:3591..3785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14662 3592..3785 +
1622929166.7390378-CDS-H-paniculata_contig14662:5960..64491622929166.7390378-CDS-H-paniculata_contig14662:5960..6449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14662 5961..6449 +
1691480757.3860695-CDS-H-paniculata_contig14662:5960..64491691480757.3860695-CDS-H-paniculata_contig14662:5960..6449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14662 5961..6449 +
1622929166.7778466-CDS-H-paniculata_contig14662:6480..65141622929166.7778466-CDS-H-paniculata_contig14662:6480..6514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14662 6481..6514 +
1691480757.395873-CDS-H-paniculata_contig14662:6480..65141691480757.395873-CDS-H-paniculata_contig14662:6480..6514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14662 6481..6514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14662.2787.1

>prot_H-paniculata_contig14662.2787.1 ID=prot_H-paniculata_contig14662.2787.1|Name=mRNA_H-paniculata_contig14662.2787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
MKEMMKAMATTAQSENTGDLDGSQAALCALFRRENLSPDRVSCAALMAQT
CSTWDGLFHPKGGFRAVAERLVDSIHASGGRVLTSARVTSVLLEDGTAVG
VSILPHTSKHKNNTTSSAGSSGGGSSTAVNVRIGKGGSVISSTGIIDTFH
HLVPLSSPLPSPVRAAAGGGGVQDGKVVGGGGGTGVVEPAGYRDLRAARP
RVHLCVGLQGNWMEDLEGTGAYFHHVSSRRGRGGGGGGG
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mRNA from alignment at H-paniculata_contig14662:3589..6514+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14662.2787.1 ID=mRNA_H-paniculata_contig14662.2787.1|Name=mRNA_H-paniculata_contig14662.2787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2926bp|location=Sequence derived from alignment at H-paniculata_contig14662:3589..6514+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTATGAAGGAGATGATGAAAGCGATGGCGACCACAGCGCAGTCGGAGAA
TACCGGTGACCTCGACGGATCGCAAGCTGCCCTGTGCGCCCTTTTTAGGC
GTGAAAACCTTTCTCCAGACCGCGTCTCTTGTGCCGCTCTCATGGCGCAG
ACGTGTAGTACATGGGACGGCTTGTTCCACCCCAAGGGGGGTTTCCGGTG
CGAACAGTAGTTTTTCCTTCTTTTGCTCCTTTTTTTTTCTCATGATTTTT
TTTTTCTGGGGGGGGGGAATGTGGCTTTCATCGCATTCATTCATTGTTGA
TCTAACGTTGATAGCATGTATATGGAATCCGAAAATTATCGGTACCCAAT
CGTAAGTTGGTCGCATATATGTATATGTATATGTATATGTATACGTAAAT
ATATATTATGTCAAATTCGCACCGTTTAGTTCGTCAGCTCCCGTTTTTTT
TTTTTTTTTTTCACCTCTAGTCACGGGGTATTGTATTGAATTGTTGACTT
GACTGTTGAGAGCCCCACGTCTACGCACGTGAAGTGGCATACGGCAATAC
TTGACAATGTTGGGATTTTTGGTCCTCTAAATACTAAATAATGATGACGT
ATTGTGATGAATAAATAGCTGGGCGACTGTTTGGAGTTTCACGTATATGC
ATGTACGTGAAGTGGCATACGGCAATACTTGACACTGTGTTTAGGTGTTT
TAGTTGCTAAAGTATGTACTGGATATCCACACACAACGACTGCCCTCTTG
AGGTCGAAGTGGCTCGCTACGCAACGCTCGACGAAGAGTAGATTTCTGGC
ATGAATGTCCTTGAATATGATCCCATGTTCAGAAGTTTCTTTATTGGAGC
ACAGACGTTTGGAAAATTGTTCCGGAAATGATAGTGTTGAATGACAATAA
TTTATGTGTACTTATATAACAAGAATATTGACCATTTTAGTATGTAATCA
TGAAAGCAGGATCCAAGATTTTTGGCAAAACGAAACCAATTCTTACACTT
TGACGGGTTTTTCAATTTATTATTCTACAAGCGGTATTTTTTTTGTTTTT
TTTTACTTGATCTTGTTTTTGACGGAGAGCAGGGAGATGGACGATCCTGC
TTTACTCGAACCCGTTCGTTGTTTTTAGTTTTTATTAGCCGTTATTACGT
ATAGCCGCGAGAGGGGGAGACAGGGGGACAGGGGGGGTGATGATCCAAGG
TGAATTATAGCTCTCACCCTGATATAATAACTCCATTACTTCCATGTTGA
GGTAGTTCATGCGGCTGGTTTCAAAGTTTAGTTTTGCACTTTTTATCAGC
AAAATTTAATTGATAAGGGGCGTCATGATTTATTTTGTCGTCATTTATCC
GAGTCTACTATAAGGTGCTATTTTGTTTTCCTTTTGAGTTGACATTACGC
TCAATGTTTGCTTCTTGGCTGCAGTAAGTGAAAGACCCGTACCAAACGTG
GTGCCTAGGTGAGAATGAGGGTGAGAGAGGAGAAGTGACGACTCTAGAGC
AGTTGGTTGTCTTGAATAGGAAAGAACGAAATGATGGCGTGGGGAGAGCA
GCAGCCTCTTCCGAGCAGTCGTACTCCATTCTTTATGCCCTATGCTCTAT
GTTCTTGTTGATGTTAATGTAGATGGTGGTGTATACCTAGATAAGATATC
AACGAGCAGGTACTGTACGTAACGGTGATAACGTAATTTGCTTCCGTGCC
GTGCCGTGCCGTGCCGTGCCGTGCTTGGTACAAATTGAGGACGCTTGGTG
TGAATCCTCTGTCACACGACATGTCTATACTTCATTGTGTTGTAATCGTA
TTAGCGATCATATCTAGTCCATATTTTTGTGTGTTAAACATCCTCCTCTC
TGCCCCCCTCTTCTGCATCGCGCTTGAGGTATCTCTGACTTGTTTGGTGA
TGATTCAGTGTGACGTTTTGTATGTGTAACCCCCTCCCCTCGTTTGATCA
GCTTGTGTATTGAGTAATCCAGTAGATTGAAGATGCTGAGCGTACAGTCC
CTTCGTTTTGTTTTACCGTTGTATTGTCATGATTTTCTGCAGTGATCCTC
CTGATTGATCTAGTTGTGCTGATGAGTGTAAGCAAGTGAAGTTTCTTTTG
AAGTCAGCCGCGTAACGTCAGGGTGGGTACACTGGAGTCATCATATGAGT
GTCAGAGCTATAATTTAACTCACCTTGTCAGGATAAACCCGTTTTTGATT
TAGTTTTGCTGATAGGTGTAAACAAGTGAAGTATAACCTCAACAAGGGGT
ACAGTGGAGTTCTTATATGAGCGTCAGAGCAAGAGTTCAACTGACGGTGG
CAGGTTTAATAGTAATAAATGCCCTCCTTCCCTCCGTCGACAAATATATA
TATATCAACCTCAAACAAACAGGGCCGTGGCCGAGAGGCTGGTGGACTCA
ATCCACGCCTCCGGAGGCCGTGTGCTAACCAGCGCGCGCGTAACCTCGGT
CCTCCTGGAAGACGGGACGGCAGTGGGAGTCTCCATCCTACCACACACTT
CCAAGCACAAGAACAACACAACATCGTCGGCCGGCAGCAGCGGCGGAGGA
AGCTCTACGGCCGTGAACGTCCGCATAGGCAAAGGAGGCTCCGTGATTAG
TTCGACAGGAATTATTGACACTTTCCACCACTTGGTGCCTCTATCATCGC
CATTACCGTCGCCTGTGAGGGCGGCAGCGGGTGGAGGGGGGGTACAGGAT
GGGAAGGTCGTGGGTGGGGGAGGGGGGACGGGGGTCGTTGAGCCCGCTGG
GTATCGAGATTTGAGGGCGGCACGGCCGCGGGTTCATCTGTGCGTCGGTC
TGCAGGGGAACTGGATGGAGGACCTGGAAGGGACTGGGGCATATTTTCAC
CACGTGAGTTCGTAGAGTGTCAAGGGTGTTGAAGGGTATAAGGCGGCGGG
GAAGGGGGGGGGGGGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14662:3589..6514+

>mRNA_H-paniculata_contig14662.2787.1 ID=mRNA_H-paniculata_contig14662.2787.1|Name=mRNA_H-paniculata_contig14662.2787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig14662:3589..6514+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAGATGATGAAAGCGATGGCGACCACAGCGCAGTCGGAGAATAC
CGGTGACCTCGACGGATCGCAAGCTGCCCTGTGCGCCCTTTTTAGGCGTG
AAAACCTTTCTCCAGACCGCGTCTCTTGTGCCGCTCTCATGGCGCAGACG
TGTAGTACATGGGACGGCTTGTTCCACCCCAAGGGGGGTTTCCGATGAAG
GAGATGATGAAAGCGATGGCGACCACAGCGCAGTCGGAGAATACCGGTGA
CCTCGACGGATCGCAAGCTGCCCTGTGCGCCCTTTTTAGGCGTGAAAACC
TTTCTCCAGACCGCGTCTCTTGTGCCGCTCTCATGGCGCAGACGTGTAGT
ACATGGGACGGCTTGTTCCACCCCAAGGGGGGTTTCCGGGCCGTGGCCGA
GAGGCTGGTGGACTCAATCCACGCCTCCGGAGGCCGTGTGCTAACCAGCG
CGCGCGTAACCTCGGTCCTCCTGGAAGACGGGACGGCAGTGGGAGTCTCC
ATCCTACCACACACTTCCAAGCACAAGAACAACACAACATCGTCGGCCGG
CAGCAGCGGCGGAGGAAGCTCTACGGCCGTGAACGTCCGCATAGGCAAAG
GAGGCTCCGTGATTAGTTCGACAGGAATTATTGACACTTTCCACCACTTG
GTGCCTCTATCATCGCCATTACCGTCGCCTGTGAGGGCGGCAGCGGGTGG
AGGGGGGGTACAGGATGGGAAGGTCGTGGGTGGGGGAGGGGGGACGGGGG
TCGTTGAGCCCGCTGGGTATCGAGATTTGAGGGCGGCACGGCCGCGGGTT
CATCTGTGCGTCGGTCTGCAGGGGAACTGGATGGAGGACCTGGAAGGGAC
TGGGGCATATTTTCACCACGTGAGTTCGGCCGTGGCCGAGAGGCTGGTGG
ACTCAATCCACGCCTCCGGAGGCCGTGTGCTAACCAGCGCGCGCGTAACC
TCGGTCCTCCTGGAAGACGGGACGGCAGTGGGAGTCTCCATCCTACCACA
CACTTCCAAGCACAAGAACAACACAACATCGTCGGCCGGCAGCAGCGGCG
GAGGAAGCTCTACGGCCGTGAACGTCCGCATAGGCAAAGGAGGCTCCGTG
ATTAGTTCGACAGGAATTATTGACACTTTCCACCACTTGGTGCCTCTATC
ATCGCCATTACCGTCGCCTGTGAGGGCGGCAGCGGGTGGAGGGGGGGTAC
AGGATGGGAAGGTCGTGGGTGGGGGAGGGGGGACGGGGGTCGTTGAGCCC
GCTGGGTATCGAGATTTGAGGGCGGCACGGCCGCGGGTTCATCTGTGCGT
CGGTCTGCAGGGGAACTGGATGGAGGACCTGGAAGGGACTGGGGCATATT
TTCACCACGTGAGTTCGCGGCGGGGAAGGGGGGGGGGGGGGGGGGGGGGG
GCGGCGGGGAAGGGGGGGGGGGGGGGGGGGGGGG
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