mRNA_H-paniculata_contig14661.2786.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14661.2786.1
Unique NamemRNA_H-paniculata_contig14661.2786.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14661.2786.1 vs. uniprot
Match: A0A6H5K639_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K639_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.610e-6
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  301 RQRTSKYPGVSFFKGRYTAQLTWGGKQVRYAKINTK 408
            R RTSKY GVSFFKGRYTAQ TWGGKQ    + +T+
Sbjct:  246 RVRTSKYHGVSFFKGRYTAQFTWGGKQYYLGRYDTE 281
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BLAST of mRNA_H-paniculata_contig14661.2786.1 vs. uniprot
Match: D7G2A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A6_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.760e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  301 RQRTSKYPGVSFFKGRYTAQLTWGGKQVRYAKINTK 408
            R RTSKY GVSFFKGR+TAQ TWGGKQ    + +T+
Sbjct:  180 RVRTSKYHGVSFFKGRFTAQFTWGGKQYYLGRYDTE 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14661.2786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K639_9PHAE1.610e-669.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2A6_ECTSI3.760e-666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14661contigH-paniculata_contig14661:3974..6421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-binding domain
Ec32 orthologEc-16_001860.1
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.5896304-CDS-H-paniculata_contig14661:3973..40841622929166.5896304-CDS-H-paniculata_contig14661:3973..4084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14661 3974..4084 -
1691480757.3453445-CDS-H-paniculata_contig14661:3973..40841691480757.3453445-CDS-H-paniculata_contig14661:3973..4084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14661 3974..4084 -
1622929166.6173902-CDS-H-paniculata_contig14661:6124..64211622929166.6173902-CDS-H-paniculata_contig14661:6124..6421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14661 6125..6421 -
1691480757.356129-CDS-H-paniculata_contig14661:6124..64211691480757.356129-CDS-H-paniculata_contig14661:6124..6421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14661 6125..6421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14661.2786.1prot_H-paniculata_contig14661.2786.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14661 3974..6421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14661.2786.1

>prot_H-paniculata_contig14661.2786.1 ID=prot_H-paniculata_contig14661.2786.1|Name=mRNA_H-paniculata_contig14661.2786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
QKSRTLYRDQPERRPVSVMGYTDPTMHAMQASQALQANQAAQQAAYHQRA
AQAQAQAQAQAQAQAQAQAQAQAAARAHHAAALAGGMGGMPGMPGMPSGG
RQRTSKYPGVSFFKGRYTAQLTWGGKQVRYAKINTK
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mRNA from alignment at H-paniculata_contig14661:3974..6421-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14661.2786.1 ID=mRNA_H-paniculata_contig14661.2786.1|Name=mRNA_H-paniculata_contig14661.2786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2448bp|location=Sequence derived from alignment at H-paniculata_contig14661:3974..6421- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAATCACGCACGCTTTACAGAGACCAGCCCGAGCGCCGGCCGGTGTC
AGTGATGGGCTACACGGATCCCACGATGCATGCAATGCAAGCGTCGCAAG
CGTTGCAAGCAAACCAGGCGGCCCAACAAGCCGCCTACCACCAACGAGCG
GCGCAGGCGCAGGCGCAGGCTCAGGCGCAGGCGCAGGCTCAGGCTCAGGC
GCAAGCTCAGGCACAGGCAGCAGCACGCGCACATCACGCGGCGGCGCTGG
CAGGTGGGATGGGGGGCATGCCGGGCATGCCGGGCATGCCGAGCGGTGTC
GACGGCGGGGTTATTGGCCCGGGTCACGCGGCGGGACATTACGATCTTCC
CGAGGTCAGTTTTTTTGTGTTGCGGGGTATTTGATACATTAATAGATGTA
GTGGTCGATTACCTACCACAAAAAACTGAAGTACATGAAACTATTTTCGC
GATATGTTCGGTTTGGTGCGTGTACCTTGGGAAAAGAGCATACACCCTAC
TGCACCACGCAGGGAAGTGGTCCGCGATTTAGGTATGTACCTCGTATGAA
ATTGTATACCTCTGCGGTGCACGGCGCGTATGGGGTTTGTCTGGGAATCG
CGGGTGCTGCGCACGAATCGTAGACGAGTCTCTAAATAGCAATGTTTCTT
TGATTTTGTACACATGAACGAATCCACGGATGTATCGCTGACGATTAGGT
TTTTGCACAACAATATGAAAAGCCGTAGCGATTTTTATTGGTATGTACCT
CTTTTTCTTCCCAGCATTACCGTCCCGGCTCCGTTATCCCTTCGGGACTG
TAGTTGATGGCTTTTGCGCAATCGACATTCCTTGCTATTTTGTTTTTCCT
CCTTTTTTTTCACTGCTCATACTTCCTGTAAATACCGCACGTGTTTTGAC
TTGTTCACCTGTCCCTCTTCCCTCTTCCCCCATTCCTAACGATAAAGCAG
TCTCCCAGCACGAGGTTGTCCACAATCGGGAGCAGGCCCCCATTATCTCC
CGCGGTAAGTGCCCCTCCTTTACGCGGCACGTTTCGGTACGTGCTAGACC
TACACCCATCCTCTATACTCGCACCTGTCGAGATCTACCCCCCCCCCTGC
TCCTTAAATACTTCGTCCTCCAAAGGACGCGTGGTCAATGTTCTAACAAT
GATGACATGCAAGACATGAGTATGCGCACTGCTACTTAAGGGGGGAAGTA
ACGGGAGGCAGGGGGACTGCGAATCTGATCCATTGGGTTCATGTATTGGA
GTAAAAAATGATGGGATGATTGGGGGAGGAAGGGAGGAAGGAAGGAAGGA
GGGAGGGAGGGAGGTCCCAAAATCAACGATTATACTCAATGACAGGGGAA
CCCTGCAATTTGTTCACGGGTGTATCCCTACGACGATCCTCCTGCCTGCA
GGCCAGCGCTTTGGTTTGTTTTAGTGGAAATTTGCCGCCTGCGCTGGTGA
ATGACATTGCGATGGCCATTACTGTGTCTTCCGACACGGAGTTACCCGGG
AGATCATTACGCTGTGTCTCGACACTTTCCCCTTGCCTCTCACACCGAGG
CGGCGCTATTGGGATGCCTCGTGCACGTCCAGTAGTGGTTTTTGTTTTGT
CGGTTTGACTGGCGTGCTCGGTGGCGACGGGAGCTTCCTTTCAGCTGTCT
CGTTGCCTCTGTCACCGTTCAACTGTCGTTATTATTTTTTAGTCAAGTTG
CTTCTTACGATTGGCCGGCTTGATCTATTTTATTCACTCACTGGTGCGAG
CCTCGGTGTGTATGTGTGTGTGCAGTTTGATGCCAACAGAGCGTTCCTTC
TGCTGTTTTTTATAACACGTCAACGAAGTATGCATTTTGTTTTCGGGAGG
TCGGGGGGGGGTGGTGGGGGGGGGTTGTTATTGACCTCTGTGTCGACACA
CCTCTCGTGCATTATTCCGGCTTATCCATCTCAACAGTGTACTTTAATGT
CCACTCAGAACTCTGCTGCATGCTCCCAGGCCCCAGTTCATCAGCACCAA
CGTCTCTCTACAAAACGAAATGCTTTTTGAACAACCCGTCACATATCGTA
AAACTCACGGACAAAAAAAAGAAGAAAAACTTGCGAGCATTTGAAAAGGA
AGTTCGTTTTGTAGCGGGAAAGCTGGTGCAGGTGGACTGGGGTTCGAGAC
CTGGGCTTCACTATTATTGACCATACAGGACCACATCGAACTCCATTTAC
AAGATAAAATATGTTGTCGCAAACCCTCTATTTTTTTTTTCATTTTATTC
CAACAGCAGCCGCAATAGCAACCGCAGCCGCAACCGCAAGTTATTATGCG
CCGATATGACTTCGCGATGTGCTCATTTTGGTTGCAGGGTCGCCAACGTA
CATCGAAGTACCCCGGAGTGTCTTTCTTCAAAGGACGCTACACGGCGCAG
CTGACTTGGGGCGGAAAGCAGGTGCGTTACGCAAAAATCAACACCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14661:3974..6421-

>mRNA_H-paniculata_contig14661.2786.1 ID=mRNA_H-paniculata_contig14661.2786.1|Name=mRNA_H-paniculata_contig14661.2786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig14661:3974..6421- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAATCACGCACGCTTTACAGAGACCAGCCCGAGCGCCGGCCGGTGTC
AGTGATGGGCTACACGGATCCCACGATGCATGCAATGCAAGCGTCGCAAG
CGTTGCAAGCAAACCAGGCGGCCCAACAAGCCGCCTACCACCAACGAGCG
GCGCAGGCGCAGGCGCAGGCTCAGGCGCAGGCGCAGGCTCAGGCTCAGGC
GCAAGCTCAGGCACAGGCAGCAGCACGCGCACATCACGCGGCGGCGCTGG
CAGGTGGGATGGGGGGCATGCCGGGCATGCCGGGCATGCCGAGCGGTCAG
AAATCACGCACGCTTTACAGAGACCAGCCCGAGCGCCGGCCGGTGTCAGT
GATGGGCTACACGGATCCCACGATGCATGCAATGCAAGCGTCGCAAGCGT
TGCAAGCAAACCAGGCGGCCCAACAAGCCGCCTACCACCAACGAGCGGCG
CAGGCGCAGGCGCAGGCTCAGGCGCAGGCGCAGGCTCAGGCTCAGGCGCA
AGCTCAGGCACAGGCAGCAGCACGCGCACATCACGCGGCGGCGCTGGCAG
GTGGGATGGGGGGCATGCCGGGCATGCCGGGCATGCCGAGCGGTGGTCGC
CAACGTACATCGAAGTACCCCGGAGTGTCTTTCTTCAAAGGACGCTACAC
GGCGCAGCTGACTTGGGGCGGAAAGCAGGTGCGTTACGCAAAAATCAACA
CCAAGGGTCGCCAACGTACATCGAAGTACCCCGGAGTGTCTTTCTTCAAA
GGACGCTACACGGCGCAGCTGACTTGGGGCGGAAAGCAGGTGCGTTACGC
AAAAATCAACACCAAG
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