mRNA_H-paniculata_contig14658.2783.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14658.2783.1
Unique NamemRNA_H-paniculata_contig14658.2783.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14658.2783.1 vs. uniprot
Match: UPI00200E0C7B (LOW QUALITY PROTEIN: GATOR complex protein MIOS n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200E0C7B)

HSP 1 Score: 69.7 bits (169), Expect = 4.180e-9
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:  165 FAGFISWCMACNHGGHAHHLHHWFQENSKCGVVSCRCMCFS 287
            FAG+ SWC+AC HGGHAHH+  WF+E+S+C V SC C C S
Sbjct:  814 FAGWFSWCVACRHGGHAHHMAGWFKEHSECPVSSCSCRCSS 854
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BLAST of mRNA_H-paniculata_contig14658.2783.1 vs. uniprot
Match: A0A0N7L4Q1_PLAHL (Uncharacterized conserved protein, contains WD40 repeats n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L4Q1_PLAHL)

HSP 1 Score: 62.4 bits (150), Expect = 9.960e-7
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 3 
Query:  138 SLETNPSDEFAGFISWCMACNHGGHAHHLHHWFQENSKCGVVSCRCMC 281
            SL    S  F  + +WC AC HGGHAHHL  WFQ ++ C V  C+CMC
Sbjct: 1066 SLAQLSSIPFVEWFTWCQACKHGGHAHHLATWFQCHTYCPVTDCKCMC 1113
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BLAST of mRNA_H-paniculata_contig14658.2783.1 vs. uniprot
Match: A0A4D9CXW3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXW3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.100e-6
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 3 
Query:  165 FAGFISWCMACNHGGHAHHLHHWFQENSK-CGVVSCRCMCFSQE 293
            F  + SWC AC HGGHAHH+  WF+   + CGV  CRC C  ++
Sbjct:  232 FGEWWSWCQACGHGGHAHHVRGWFEGGREVCGVTGCRCRCMQRD 275
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BLAST of mRNA_H-paniculata_contig14658.2783.1 vs. uniprot
Match: A0A6A6NWW3_9PEZI (zinc_ribbon_16 domain-containing protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6NWW3_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 6.760e-6
Identity = 22/47 (46.81%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  141 LETNPSDEFAGFISWCMACNHGGHAHHLHHWFQENSKCGVVSCRCMC 281
            L+    D  A FI++CM+C HG HAHH   WF  ++ C V  C+CMC
Sbjct:  955 LQRAQEDPMARFITFCMSCRHGFHAHHAREWFARHAMCAVPDCQCMC 1001
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BLAST of mRNA_H-paniculata_contig14658.2783.1 vs. uniprot
Match: A0A5D6YZ23_9STRA (zinc_ribbon_16 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YZ23_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.260e-6
Identity = 21/39 (53.85%), Postives = 24/39 (61.54%), Query Frame = 3 
Query:  165 FAGFISWCMACNHGGHAHHLHHWFQENSKCGVVSCRCMC 281
            F  + +WC AC HGGHAHHL  WF  +S C V  C C C
Sbjct: 1189 FVEWFTWCQACKHGGHAHHLAEWFATHSACPVTDCNCNC 1227
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BLAST of mRNA_H-paniculata_contig14658.2783.1 vs. uniprot
Match: N1Q390_DOTSN (zinc_ribbon_16 domain-containing protein n=1 Tax=Dothistroma septosporum (strain NZE10 / CBS 128990) TaxID=675120 RepID=N1Q390_DOTSN)

HSP 1 Score: 57.0 bits (136), Expect = 4.700e-5
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 3 
Query:  156 SDEFAGFISWCMACNHGGHAHHLHHWFQENSKCGVVSCRCMC 281
            SD  A FI++C+ C HG HAHH H WF++++ C V  C C C
Sbjct:  882 SDVMAKFITFCVGCQHGFHAHHAHAWFEKHTTCPVPGCICRC 923
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14658.2783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00200E0C7B4.180e-963.41LOW QUALITY PROTEIN: GATOR complex protein MIOS n=... [more]
A0A0N7L4Q1_PLAHL9.960e-752.08Uncharacterized conserved protein, contains WD40 r... [more]
A0A4D9CXW3_9STRA3.100e-650.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6A6NWW3_9PEZI6.760e-646.81zinc_ribbon_16 domain-containing protein n=1 Tax=L... [more]
A0A5D6YZ23_9STRA7.260e-653.85zinc_ribbon_16 domain-containing protein n=1 Tax=P... [more]
N1Q390_DOTSN4.700e-550.00zinc_ribbon_16 domain-containing protein n=1 Tax=D... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14658contigH-paniculata_contig14658:1614..4821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score67.0
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog7460.GB43178-PA
Preferred namemio
KEGG koko:K20407
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000323,GO:0001674,GO:0001709,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005767,GO:0005773,GO:0005776,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008150,GO:0008152,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010506,GO:0010507,GO:0010564,GO:0010646,GO:0010647,GO:0016043,GO:0019222,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030154,GO:0030716,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032008,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0034641,GO:0035859,GO:0040020,GO:0042594,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044754,GO:0045165,GO:0045793,GO:0046483,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0061700,GO:0065007,GO:0065008,GO:0071496,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:1901360,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928,GO:2000241
EggNOG free text desc.Zinc-ribbon like family
EggNOG OGs38BEP@33154,3BBBG@33208,3D36K@33213,3SIF3@50557,41XJ0@6656,46GRB@7399,KOG1008@1,KOG1008@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_002770.1
COG Functional cat.S
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size1204
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14658.2783.1prot_H-paniculata_contig14658.2783.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14658 2641..3946 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.006111-UTR-H-paniculata_contig14658:1613..16401622929166.006111-UTR-H-paniculata_contig14658:1613..1640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14658 1614..1640 +
1691480757.0479956-UTR-H-paniculata_contig14658:1613..16401691480757.0479956-UTR-H-paniculata_contig14658:1613..1640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14658 1614..1640 +
1622929166.0238564-UTR-H-paniculata_contig14658:2614..26401622929166.0238564-UTR-H-paniculata_contig14658:2614..2640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14658 2615..2640 +
1691480757.0661786-UTR-H-paniculata_contig14658:2614..26401691480757.0661786-UTR-H-paniculata_contig14658:2614..2640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14658 2615..2640 +
1622929166.0733547-UTR-H-paniculata_contig14658:3946..48211622929166.0733547-UTR-H-paniculata_contig14658:3946..4821Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14658 3947..4821 +
1691480757.0966527-UTR-H-paniculata_contig14658:3946..48211691480757.0966527-UTR-H-paniculata_contig14658:3946..4821Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14658 3947..4821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.043829-CDS-H-paniculata_contig14658:2640..27801622929166.043829-CDS-H-paniculata_contig14658:2640..2780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14658 2641..2780 +
1691480757.0760648-CDS-H-paniculata_contig14658:2640..27801691480757.0760648-CDS-H-paniculata_contig14658:2640..2780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14658 2641..2780 +
1622929166.0569084-CDS-H-paniculata_contig14658:3810..39461622929166.0569084-CDS-H-paniculata_contig14658:3810..3946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14658 3811..3946 +
1691480757.0885077-CDS-H-paniculata_contig14658:3810..39461691480757.0885077-CDS-H-paniculata_contig14658:3810..3946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14658 3811..3946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14658.2783.1

>prot_H-paniculata_contig14658.2783.1 ID=prot_H-paniculata_contig14658.2783.1|Name=mRNA_H-paniculata_contig14658.2783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MTARRGSTLSAGAMSRASAASVEDKIEVSLETNPSDEFAGFISWCMACNH
GGHAHHLHHWFQENSKCGVVSCRCMCFSQEKYQEYEPLQQK*
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mRNA from alignment at H-paniculata_contig14658:1614..4821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14658.2783.1 ID=mRNA_H-paniculata_contig14658.2783.1|Name=mRNA_H-paniculata_contig14658.2783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3208bp|location=Sequence derived from alignment at H-paniculata_contig14658:1614..4821+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATGGCGGGGGGGGGGGTAAGGGAGGTAGGTACCCAGCGTCAGCAGTT
GCTCCTCCGGATTTTGTACATCACTTGAAAGTACAATAGAAGTAGAATTT
GCCCGGAATATTCCCCGAAAAGGTGAATCAGCGTAGGCGTTGCTATTATA
TAGGGAACTCGGAACAAGTTAGTTAGTTCACTGCTAGCTACACGACTGGT
GGCGCCGACTTGAACAAGAAGTGTTTTGGTGCACAGCTCAAAACCACCCA
GGCCAGAACATTTTTATAGCTGTCTGAGTATAGTACTATGCTGAGTTAGT
GTACCTCAACCATCGTGTTTGACCAAGTGGTGTGAACACTGCTGCCACGA
GCATGGCCGACAGCGAACTTTTGAAGCGGACTGTGCTGCAATCTTTGAAG
TCAAGACATTCGCGAATGGTGTTTGATCTTTAGAGATAAAGTCAATCAAG
GAGCAATGGAATACATGTATGCTTGTGTGGGCTCCTCCAAAAATAGAAGT
TGTTTCCCGTCGTCTTGTCAACCACATGCCGAGAAAAACATTTTGGGATC
AATAAGTGGCACTCGAGTGCTCCCATCCTGGATGATGATCATGTGCTCTG
CGCGATTTGCACACAATTGACTCTATGTACGAGTACAAGATAAATCCAGC
TTCCGGCAGATTACTGTTGTTCACCTCTAAGGTGTGATATTGTCCTTCCT
GTTTTGCACTGTGTGTTTTTCGGGCCGGATCCGGGCTCTCTTCTGTCTGT
GTAGTGTTGGTGCTTGTAGAAATAGGAGACACCAGAGACATGAACAGACA
GGTGAGGTATACAGAATAGTGATGGAGAAATTGCAGGAACAGAGAGATAT
GAGGTATGCACAAGACACACGAAGGAGAAACGGAGAAGTCGCAGAAATTG
ATTAAGAAGAGATGAACGAGAGAGGTAAGAGAGCATCCATCTGCGGTATT
TGCCTACATCCAACTGTATCCTGATTCATATCGTGCGTTCCTCATATGCA
GGCCCAGGTGCGGTGGTGGAGTCGGAAATGACGGCGAGGAGAGGCAGCAC
GCTGTCCGCGGGGGCGATGTCTAGAGCGTCGGCCGCTTCCGTCGAGGATA
AGATCGAGGTCTCCCTGGAAACTAATCCCTCAGACGAGTTTGCGGGGTTC
ATCAGCTGGTGTATGGCGTGAGTGCTCATGTGAAGTTGTTTGATTGCTTT
TCGTGCTGATTTGTTATCAGAGCCCCCTTGGGTAGCGTGAGAGTTGAACT
ACTGTTAGTGGTCGGTAGGATTACCCCCCCTCCCCCCATTTTCTTCCAGG
GGGGAGATAAGCGGGGAGAAGGATATACCCATGGTTAGACGATTGACCAT
GCGTCCTGGGGAGTGCGGAGCTTTGTTCTTGTCAGAGCGATTTTCAATGG
CCAATCATCCTTCGAGAGAAGAGAGGGATTGGGAACGGTAAAGCTGGAGA
GCGCCGAGAGGAGACAGGGTGATTTGTAAATTGAAAAGTAAACCTCGATG
GCGCTGTGAGCTGAGGGTGTTATACTCGCCGTTGTTGTTTTGGTTTGGTT
GTTCTTCGTTGGTCCGAGCTGTGTGGAACTCAGCACGACTCATGTGTGCA
TGTCCAATGAAACATGTGAGAGTAGTGGCGCCACCCTTTTCTGGGCTCCA
AAGCGATGGAATATAATAATGTGCATGTGCGTAACATGATATCCACGTCT
ACAGTTGCGGCAAGCCTTGTCCCGACTGTTTGGGTGCTGACGTCTGATCG
CGAGTGTGCTTCACAGTAACAATACGTGCGTGTCATCACTGTTGAAGAGA
CGGTCGTCAGAATTGCGGGAACGAAGCGCTGGTCGATGAGACATGAATAT
TTGTATAGTGGGTGTTTTATTGAGGGAGGTTTTGGCGGCCGTGTTGTCGC
GATTATGTTGTTACTCTTTCACCGCGAAGTCGACGTTCTATTTCTGGCCC
TCTCCAGGTATGCACGAATACATACCCATGTGAAAAACGAAAATTTTCAA
CTTTTTTGCCACGTTATACACTTGCGAGTTCCCATGTTCGCTCGTATTTT
GTGCTTTTTTTGCAGGTGAGTTTTGAAGCCATCTTACGTTTTCATATGCT
CCTCTTCCCGCCATTTTTCTTTTTGTGTTTCTGTTCGCCTACCTGTGTTC
TTATTTCTTGTCCACGCTCCGAATGCCTATCCCGTTCAATCGCACAGGTG
CAACCACGGCGGACACGCGCACCACCTGCACCATTGGTTCCAAGAGAACT
CCAAGTGCGGGGTTGTATCCTGTCGCTGCATGTGTTTCTCTCAGGAGAAG
TACCAAGAGTACGAGCCTTTACAGCAAAAATAAAAAGAGGGGCTGACCGT
GCAGTACGCGCAGCCCCCGCCGCCCCCTTTTTTCGTTGTTTTGTGCCCCC
CCCCCCCCGTCCTCCTCTCCCCTTTGGAGCATACACTATAAACATTAGTG
TTTACAACTGTTTCGTTTCTCCGACCAGTACTATGTGGGTGAAGTGGCGT
GTCATGATTTGTGTTTAGCCCGTGCAGAGTGTTAGTTTTACTTCACAGTC
GCGCTGATACGTTCGATGTGCCTGCCTCTGGCAAAGGAGGCGGCAGTATA
CCCCCTCCCCCGTAAGGTGTGTCATTCTCCAATGGCGTCATCCTAGGTGG
GTGGTTGTTTTTCCTTTGGGAAATGATGGTTGTACACTACGCGTTGTTGC
CCTGCTGGATTGGGGCTCTTGATGCTCGTGTTGTGTGGTGTGTTGTTCAA
GCCCATAACGATTGAACGTGCTGTAAAACCGATGCTTGAGTGTGGTAAGG
TAGGGAGATGTATAAAGGTTTCGTATTCGTGAACGATCTACCGTGTAGCT
TGGTATTGTGCAAAGAGGCTGTTGTGAATCGACGTACGTGAGAAGGAGGG
GTGTCCTTCGATGTCGTTTGTTTTTAGGTTAAATATGTTGAGCGAAGTAA
TCCATGTGACAAGCCGAGCCGGAAGGCCAGCGTTAAAGCTCACGACGGCG
GGAGAACGAGTCGTGCGATGGTCTCGTTGGACCATATTGTTTTGAGCGTT
GTATAGCTGGCAAGGTATCACTCACCCACCCATCCCTTAGCTTATATCAG
TTTTGTGTAGCTCTGTCGTTCACCTTGTCTAGTCTTCTAATTATGCTCTG
GCTGTGTAACTGACAAACGTCAGGAAAATGACGTTAAAACCTGGCAAACT
GGATGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14658:1614..4821+

>mRNA_H-paniculata_contig14658.2783.1 ID=mRNA_H-paniculata_contig14658.2783.1|Name=mRNA_H-paniculata_contig14658.2783.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig14658:1614..4821+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGCGAGGAGAGGCAGCACGCTGTCCGCGGGGGCGATGTCTAGAGC
GTCGGCCGCTTCCGTCGAGGATAAGATCGAGGTCTCCCTGGAAACTAATC
CCTCAGACGAGTTTGCGGGGTTCATCAGCTGGTGTATGGCATGACGGCGA
GGAGAGGCAGCACGCTGTCCGCGGGGGCGATGTCTAGAGCGTCGGCCGCT
TCCGTCGAGGATAAGATCGAGGTCTCCCTGGAAACTAATCCCTCAGACGA
GTTTGCGGGGTTCATCAGCTGGTGTATGGCGTGCAACCACGGCGGACACG
CGCACCACCTGCACCATTGGTTCCAAGAGAACTCCAAGTGCGGGGTTGTA
TCCTGTCGCTGCATGTGTTTCTCTCAGGAGAAGTACCAAGAGTACGAGCC
TTTACAGCAAAAATAAGTGCAACCACGGCGGACACGCGCACCACCTGCAC
CATTGGTTCCAAGAGAACTCCAAGTGCGGGGTTGTATCCTGTCGCTGCAT
GTGTTTCTCTCAGGAGAAGTACCAAGAGTACGAGCCTTTACAGCAAAAAT
AA
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