mRNA_H-paniculata_contig14655.2782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14655.2782.1
Unique NamemRNA_H-paniculata_contig14655.2782.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A397EZF3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EZF3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.630e-21
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 DESQAGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            D + AGGMAGT VDV+LYPLDTIKTRLQS +GFLKAGGF GVY+G+S A AGSAPG
Sbjct:    4 DAAVAGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPG 59
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A3R7D5F1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D5F1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.500e-20
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   13 AGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            AGGMAGT VDV+LYPLDTIKTRLQS +GFLKAGGF GVY+G+S A AGSAPG
Sbjct:    1 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPG 52
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A397DY10_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DY10_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.620e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   13 AGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            AGGMAGT VDV+LYPLDTIKTRLQS +GFLKAGGF GVY+G+S A AGSAPG
Sbjct:    1 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPG 52
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A024U5F9_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024U5F9_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.340e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   13 AGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            AGGMAGT VDV+LYPLDTIKTRLQS +GFLKAGGF GVY+G+S A AGSAPG
Sbjct:   18 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPG 69
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A485KXJ2_9STRA (Aste57867_13218 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXJ2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.910e-19
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   13 AGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            AGGMAGT VDV+LYP+DTIKTRLQS +GF+KAGGF GVY+G+S A AGSAPG
Sbjct:   24 AGGMAGTGVDVALYPIDTIKTRLQSSQGFVKAGGFKGVYKGISAAAAGSAPG 75
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: D8LFT9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT9_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.600e-18
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   13 AGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            AGGMAGTAVDV+LYPLDTIKTRLQSP+GF+K+GG  GVY G+S A  GSAPG
Sbjct:   13 AGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPG 64
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A418CJR3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CJR3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.960e-18
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   22 MAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            MAGT VDV+LYPLDTIKTRLQS +GFLKAGGF GVY+G+S A AGSAPG
Sbjct:    1 MAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPG 49
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A1V9ZD58_9STRA (S-adenosylmethionine mitochondrial carrier protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZD58_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.420e-18
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   13 AGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            AGG+AGT+VDV+L+PLDTIKTRLQS +GFLKAGGF GVY+G+S A AGSAPG
Sbjct:   16 AGGIAGTSVDVALFPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPG 67
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A7S0HCV9_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0HCV9_9CRYP)

HSP 1 Score: 81.3 bits (199), Expect = 3.510e-18
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   13 AGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            AGG AGTAVDV+L+P+DTIKTRLQSP+GF+ AGGF GVY G++ A AGSAPG
Sbjct:   17 AGGCAGTAVDVALFPIDTIKTRLQSPQGFMAAGGFKGVYNGLASAAAGSAPG 68
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BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Match: A0A7S2R0Q8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0Q8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.050e-18
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   13 AGGMAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG 168
            AGG AGT+VDVSLYP+DTIKTRLQSP GFLKAGGF GVY G+  A  GSAPG
Sbjct:   24 AGGCAGTSVDVSLYPIDTIKTRLQSPSGFLKAGGFRGVYNGLGAAALGSAPG 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14655.2782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397EZF3_9STRA1.630e-2178.57Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7D5F1_9STRA2.500e-2082.69Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397DY10_9STRA1.620e-1982.69Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A024U5F9_9STRA3.340e-1982.69Uncharacterized protein n=9 Tax=Aphanomyces TaxID=... [more]
A0A485KXJ2_9STRA8.910e-1978.85Aste57867_13218 protein n=1 Tax=Aphanomyces stella... [more]
D8LFT9_ECTSI1.600e-1878.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A418CJR3_9STRA1.960e-1881.63Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9ZD58_9STRA3.420e-1878.85S-adenosylmethionine mitochondrial carrier protein... [more]
A0A7S0HCV9_9CRYP3.510e-1875.00Hypothetical protein (Fragment) n=2 Tax=Geminigera... [more]
A0A7S2R0Q8_9STRA6.050e-1878.85Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14655contigH-paniculata_contig14655:1250..1417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog157072.XP_008870135.1
Preferred nameSLC25A26
KEGG koko:K15111
KEGG TC2.A.29.18
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000095,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006839,GO:0006855,GO:0008150,GO:0015238,GO:0015805,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0072348,GO:1901682,GO:1901962
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size168
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.9457433-UTR-H-paniculata_contig14655:1249..12701622929165.9457433-UTR-H-paniculata_contig14655:1249..1270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14655 1250..1270 +
1691480757.0141277-UTR-H-paniculata_contig14655:1249..12701691480757.0141277-UTR-H-paniculata_contig14655:1249..1270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14655 1250..1270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.9602833-CDS-H-paniculata_contig14655:1270..14171622929165.9602833-CDS-H-paniculata_contig14655:1270..1417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14655 1271..1417 +
1691480757.0359254-CDS-H-paniculata_contig14655:1270..14171691480757.0359254-CDS-H-paniculata_contig14655:1270..1417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14655 1271..1417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14655.2782.1prot_H-paniculata_contig14655.2782.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14655 1271..1417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14655.2782.1

>prot_H-paniculata_contig14655.2782.1 ID=prot_H-paniculata_contig14655.2782.1|Name=mRNA_H-paniculata_contig14655.2782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MAGTAVDVSLYPLDTIKTRLQSPKGFLKAGGFAGVYQGVSVAIAGSAPG
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mRNA from alignment at H-paniculata_contig14655:1250..1417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14655.2782.1 ID=mRNA_H-paniculata_contig14655.2782.1|Name=mRNA_H-paniculata_contig14655.2782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig14655:1250..1417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGAATCCCAGGCGGGGGGCATGGCAGGCACGGCTGTCGATGTCTCCTT
GTACCCGCTGGACACAATCAAGACAAGATTGCAGTCTCCCAAGGGGTTTT
TGAAGGCGGGGGGGTTCGCGGGCGTGTACCAGGGCGTCAGCGTTGCGATC
GCGGGGTCTGCGCCAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14655:1250..1417+

>mRNA_H-paniculata_contig14655.2782.1 ID=mRNA_H-paniculata_contig14655.2782.1|Name=mRNA_H-paniculata_contig14655.2782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig14655:1250..1417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGGCACGGCTGTCGATGTCTCCTTGTACCCGCTGGACACAATCAA
GACAAGATTGCAGTCTCCCAAGGGGTTTTTGAAGGCGGGGGGGTTCGCGG
GCGTGTACCAGGGCGTCAGCGTTGCGATCGCGGGGTCTGCGCCAGGAATG
GCAGGCACGGCTGTCGATGTCTCCTTGTACCCGCTGGACACAATCAAGAC
AAGATTGCAGTCTCCCAAGGGGTTTTTGAAGGCGGGGGGGTTCGCGGGCG
TGTACCAGGGCGTCAGCGTTGCGATCGCGGGGTCTGCGCCAGGA
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