mRNA_H-paniculata_contig14649.2779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14649.2779.1
Unique NamemRNA_H-paniculata_contig14649.2779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14649.2779.1 vs. uniprot
Match: A0A6H5JI46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI46_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.190e-37
Identity = 83/136 (61.03%), Postives = 94/136 (69.12%), Query Frame = 1 
Query:  154 AYVRSLEEQLEHKEEKLEHHRKVIRLYQNLSSLAIHVK---KGSRGGGRDXXXXXXXXXXXXXXXEVMVCTAVNHLHRRAVRFDLKVPADQDSDAFIYNATGNTHLLPEYMKHELSFTKKQCPLFLTKLLQNIFRS 552
            +YVR LEE       K  +HRK+IRLYQNLSSLAIH K   KGS  GG D               +VM CTAVNH+HRRAVRFDLK+P ++D   F Y ATGNTHLLPEYM+H L FTK QCPLFLTKLLQN+FR+
Sbjct:  522 SYVRGLEE-------KQVYHRKIIRLYQNLSSLAIHPKEKKKGSGDGGGDAGMRDM---------DVMTCTAVNHVHRRAVRFDLKIPHEEDVGDFAYRATGNTHLLPEYMQHPLLFTKNQCPLFLTKLLQNLFRA 641
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BLAST of mRNA_H-paniculata_contig14649.2779.1 vs. uniprot
Match: D7FXS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS9_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.040e-36
Identity = 78/133 (58.65%), Postives = 92/133 (69.17%), Query Frame = 1 
Query:  154 AYVRSLEEQLEHKEEKLEHHRKVIRLYQNLSSLAIHVKKGSRGGGRDXXXXXXXXXXXXXXXEVMVCTAVNHLHRRAVRFDLKVPADQDSDAFIYNATGNTHLLPEYMKHELSFTKKQCPLFLTKLLQNIFRS 552
            +YVR LEE       K  +HRK+IRLYQNLSSLAIH K+  +G G                 +V+ CTAVNH+HRRAVRFDLK+P ++D   F Y ATGNTHLLPEYM+H L FTK QCPLFLTKLLQN+FR+
Sbjct:  523 SYVRGLEE-------KQVYHRKIIRLYQNLSSLAIHPKEKKKGSG------DAGGDAGKRDLDVITCTAVNHVHRRAVRFDLKIPHEEDVGDFAYRATGNTHLLPEYMQHPLLFTKNQCPLFLTKLLQNLFRA 642
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BLAST of mRNA_H-paniculata_contig14649.2779.1 vs. uniprot
Match: A0A835YUA0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.080e-14
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:  193 EEKLEHHRKVIRLYQNLSSLAIHVKKGSRGGGRDXXXXXXXXXXXXXXXEVMVCTAVNHLHRRAVRFDLKVPADQDSDAFI-YNATGNTHLLPEYMKHELSFTKKQCPLFLTKLLQNIFR 549
            E K++  R ++ +YQ LSSLA++         +                  ++CTAVNH+H+RAVRF LK+P D + +  + Y       LLPEYM+H LSF+ +Q PLFL +LLQ +FR
Sbjct:  634 EAKVDRQRALLLVYQQLSSLALNFDPEDSAQSK------------------VICTAVNHIHKRAVRFALKLPGDDEDEGEVQYAPRSGAALLPEYMQHGLSFSAEQSPLFLVQLLQGLFR 735
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BLAST of mRNA_H-paniculata_contig14649.2779.1 vs. uniprot
Match: W7UAT5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAT5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.070e-7
Identity = 37/133 (27.82%), Postives = 66/133 (49.62%), Query Frame = 1 
Query:  160 VRSLEEQLEHKEEKLEHHRKVIRLYQNLSSLAIHVKK-GSRGGGRDXXXXXXXXXXXXXXXEVMVCTAVNHLHRRAVRFDLKVPADQDSDAFI---YNATGNTHLLPEYMKHELSFTKKQCPLFLTKLLQNIF 546
             R L+ Q+   + KL   ++++  YQ  +SL I +++  S  GG                   + CTA+NH+H++AV+F LK+  D +  + +   +    N  L P +++ E +   KQCPL L  +L+ +F
Sbjct:  193 TRELQAQIATLQGKLSDLKRILIAYQRFTSLCISMEREASAPGGMSK----------------LSCTAINHVHKKAVKFSLKMNVDVEDSSNMDATFRPEANKELFPPFLQQEATLETKQCPLLLLSILKTLF 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14649.2779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JI46_9PHAE2.190e-3761.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXS9_ECTSI2.040e-3658.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUA0_9STRA3.080e-1439.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7UAT5_9STRA6.070e-727.82Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14649contigH-paniculata_contig14649:1649..6226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1004
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14649.2779.1prot_H-paniculata_contig14649.2779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14649 2115..3130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.2336435-UTR-H-paniculata_contig14649:1648..20381622929165.2336435-UTR-H-paniculata_contig14649:1648..2038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14649 1649..2038 -
1691480756.6270123-UTR-H-paniculata_contig14649:1648..20381691480756.6270123-UTR-H-paniculata_contig14649:1648..2038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14649 1649..2038 -
1622929165.2518785-UTR-H-paniculata_contig14649:2055..21141622929165.2518785-UTR-H-paniculata_contig14649:2055..2114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14649 2056..2114 -
1691480756.6379213-UTR-H-paniculata_contig14649:2055..21141691480756.6379213-UTR-H-paniculata_contig14649:2055..2114Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14649 2056..2114 -
1622929165.3097847-UTR-H-paniculata_contig14649:3130..31331622929165.3097847-UTR-H-paniculata_contig14649:3130..3133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14649 3131..3133 -
1691480756.6664886-UTR-H-paniculata_contig14649:3130..31331691480756.6664886-UTR-H-paniculata_contig14649:3130..3133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14649 3131..3133 -
1622929165.3251078-UTR-H-paniculata_contig14649:5884..62261622929165.3251078-UTR-H-paniculata_contig14649:5884..6226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14649 5885..6226 -
1691480756.6759298-UTR-H-paniculata_contig14649:5884..62261691480756.6759298-UTR-H-paniculata_contig14649:5884..6226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14649 5885..6226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.2734752-CDS-H-paniculata_contig14649:2114..21891622929165.2734752-CDS-H-paniculata_contig14649:2114..2189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14649 2115..2189 -
1691480756.6473322-CDS-H-paniculata_contig14649:2114..21891691480756.6473322-CDS-H-paniculata_contig14649:2114..2189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14649 2115..2189 -
1622929165.2899985-CDS-H-paniculata_contig14649:2995..31301622929165.2899985-CDS-H-paniculata_contig14649:2995..3130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14649 2996..3130 -
1691480756.6569753-CDS-H-paniculata_contig14649:2995..31301691480756.6569753-CDS-H-paniculata_contig14649:2995..3130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14649 2996..3130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14649.2779.1

>prot_H-paniculata_contig14649.2779.1 ID=prot_H-paniculata_contig14649.2779.1|Name=mRNA_H-paniculata_contig14649.2779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MVCTAVNHLHRRAVRFDLKVPADQDSDAFIYNATGNTHLLPEYMKHELSF
TKKQCPLFLTKLLQNIFRS*
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mRNA from alignment at H-paniculata_contig14649:1649..6226-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14649.2779.1 ID=mRNA_H-paniculata_contig14649.2779.1|Name=mRNA_H-paniculata_contig14649.2779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4578bp|location=Sequence derived from alignment at H-paniculata_contig14649:1649..6226- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGCAACTATCCAACACACGAGCAGAAGCCGCAGGCGGCGGCGGTAA
TACTGGTAGAGCGGGCCGGGTCAATCCAGTGACGGTAGCGTCTTCCGCCG
TCCAAACCTCGCCCGGACCCGGCCTCGCACCGACGGACTCAGACCCGCAG
TCGGCGTACGTCCGGAGCCTGGAGGAGCAGCTGGAGCACAAGGAGGAGAA
GCTGGAGCACCACCGAAAAGTGATCAGACTGTATCAGAATCTCAGCTCAT
TGGCGATACACGTCAAGAAGGGCTCCAGAGGCGGGGGGCGGGATGAGGCT
GCTGCTGCTGCTGCCGCTGGTGAGGGAGAGGAAGACGACGAGGTATGTTT
GAGACAAACCGTTTATTCAAGTATTCCGCGCGACCGGCACTTGCTCACAT
GACCTAAGACCACAGGAAACCATTTACTGAAATAGATAGAGTAAACATGT
ACAAATTTGAAGAGATTTTTTTTTTTTTGAGTAATCTCGCCCGCTCCTTT
GAACACACCCTGAGCCTGAGATGTGGAAGAAAAATAAAAATTCAAGCAAT
TCAGCAAAAAAAAAAAAAAGTTAAAACGTTCGATTGTAGCCCAACACCGA
GTCTTGATGAAAACCAGAATTAAGTTCTTTTAGCTTCTCTTGCTTTCTCT
CAAACACGAAAATTGATGTACGTAACGTTAGTCCGATTTTCAGTCATTAT
GAGCGAACCGGTTCTGTTTGTGTCGCTGTGTTTATAGGTGGCGTGGTGAA
CACTTGCTCTGAGCATGACTGCTGAAGTGAAATGGGAACCCCAGTTTAAG
ACGATCAAATATTAGGCGGAATTAGATTTTTAAAGCGGATCAAGTCGGCT
TGTCTCCAAACCATAAGGAGCTGTTGGCGTGTTACACCCCCCCCCCCCCC
GCGTGCGCGCTACTACTGTAGGTACAACATACATGTAATTTATACTGTTC
AGGTGATGATCGTGACGACGTCAAGTCTGTTGGAATCTATAACCCCGGTG
CATGTTGCACGCACGTGTTTTCTTGGCCGCACGTAATGCGTTGGGAAAAT
CTCAAAATTGTATAATAGCACTTGAGAGGTGCGCTCCGCTCCGTTGTGCT
CCGGATACGATCCGGATTTGATATACTCGGGTATCCGAATCTGTCTGCCT
GAAAAATTCGCGGGTCGTGCTCTTCCTAGAACTGGAATATTTCCCCTCCA
AATCCGTTCCGCCGCTGGTTAGCGTGCGTGCGTTGGGCCACGACTTTTCT
TGAGCATTGACGATAGAAAGGATAATGACGTAGTTGGTTGGGGAGTTTAG
CTGTCATATCCGTTGAAATCTGGATTTGTCGAACGATCCGGAACTATCCT
TGGATTTGTTCGGATCGACGAGAGGAAGAAAGATCATGCCAGCTCGCGGG
GGATTTAGTACTCAAATGGTAACGATGCCCGTCTTGTGGCAGGGAGTAAC
CATTCTACAGTCTACGGTGCATTGTGTAGTGGATATCTAGCGTGAAGACA
GGCTGCATCGCTCAAATGGTAACCATGCCCATCTCGTGGAAGGGAGTCAC
CATTGTACAGTGTACCATGTATTGTGCGATGTGTGTGTGTATAGCGCAGC
GCTCAAATCGTAACATTGCCCGTCACATGCGTTAAAAAAATGTATTCATC
GGACAATCCAGAACTACGATGGATTTTTGCGGATCCACGTCTTCATCCAC
AGATCGATCCGGGTTACCACGTTTCCTGAAATCCTAAATCCGTTCCATGG
CCCTTTGTTTACAATCGAACGCACTTCCATCAATAATGGCGTTGCATTAA
TTTGCCTACAACAACATATAGTAGGGATGTTTGAAGAGGCTCTTGTTGTC
CACCGAAGCCTCCGATGTGACGTTCAAGTTCTTTGTGTTGTGTCGGCAAG
GACAGCTAAATTTTTCACCCCGCCTAAGGGGCAAGAGCTTTAGAGTGCCA
CGGGTAAACAGCAGGACTCCTCTCGTGGACCCTGCTTCCAGGTGCCTGTT
AGTATTCGTATATGAAGATCTGTGGAGTTTGGCGGTTGAGACTAACGGTG
TCTCCGCCAGAAGCCCCTTCTGACAGTTCAGGAACCAACGAGTGATTTGT
ATCTTTACATTCGTTCTCCATGTGTGTGATGCAATCTTCGATACGAGCTA
CTTCTCCGGAGACCCTGGCTGCATTTACCACGAAAAGCACTTGTCATCTT
ATCACCAATGCATGACCGACTTCCTGAATTACTGTAGCACAGTAAACCCT
GTGTAGTAACTAGGGCATGTGTGTAAAGAGCACGTTCCTGGAGTTCCTGG
GGTTCCTGAGGTTCCTGAACCCCGGTCTCCTACATAACAACCAATGACTA
TTTTTTCGTGTTCTCAGAACAGTATTTCCAGCTGTGTCCGACTCCGGATG
GCGAGTTCATCTACAACAGATTAAAACCCAAGTTTGTGCTCCGTATTACA
CCCCCGAGACTTGAAATCAACCCGCATAGAGTAGGCACTGTCCCCTCTAG
AGCCATGTCTCCTGGCAGCATCGTGTTTTCACCCTCAAGTGCAATTTTAC
CCCCCAAGTATTACGCAGACATTACGGTTTGTGGGTTGCACGCTGTGGTG
TGGTTACGGTAACGTTACTTGGCGGGAATCACGGGAATGTTCGCTGTATT
TGCACGGTAACCATTACGTCCCCGACTTTTTTTTTCGTTTTACCGTGGTG
GCTTGAAAACCTAAGTAATTAGTAATATTAGTCTTTTTCCACAGTATTTC
CGTCAAAACCATTGTTTTTGTTTTTTTTAACCCCCAGAAGGCTGAGGCAA
AAACCTTTATCCGATGCTTCCATACTGCAGAATTTCTATGTCTACATTTC
CTTTAACAGAACAGAGTTATTTATTCCTCTGCGGGGTAGGCGCCGCCACC
CAGGTTCGGCCGAACCAAGTAGGCAGTGTGGGGGTTGCACCCACTAAAAG
ACCTCTGACTAGACTTCCGGACATGCTCAATTCACAAGCTACCCTACCCG
TTCGGGCGTAGGTCCGTGCCAAAACCATTGTTCATGTGACAAGCGTTGTA
TGTAATTCTTTTGTACTTGTATACTATTTAAATCCCCCCACAGGTGATGG
TGTGCACGGCGGTAAACCATCTCCATCGACGAGCGGTACGATTCGACCTC
AAAGTCCCCGCAGACCAAGATTCGGACGCCTTCATCTACAACGCCACGGG
CAACACCCATCTCCTACCGGAGTACATGAAGGTTAGCAGTTAGGTTCGGT
GGTTGGGCAGTTTATTACGTTCGCGACCGGGGCGAAGCAAGAGGAAGAGA
AGCGATGAGAGAGTAGTTCATTTTACAACTCTCTCACCCCCCGGATAAAC
ACGAATATTTTGCAAATGGTCTTCTCAAAAGGACAAATCAAGTATTTGCC
TGAGTTTCAGAATGAGCGAACACACAAAATAGAGTACCCACCCCTGTTTG
TTCGATTTTACGAGTATTAGCAGCAGTCGCGGATGGTCCAGGGCACGTAA
AACACACGCCCCCTTAAACAGTACGGTCATTCCGGATCGTGCATTGTGAA
GCTCTGAGGATGCATAAACGCATGTACGTCATCGAAGAGGTTTTTGATTT
TATTGTTTTCTCGGCAGCTTTCTGGAGCAACCCTGGTTAATCCCCACACA
CACACACTTCGGCCATGTGTGGCGTTTTGAGAGCGAAGCGGGGTGAAGTT
TTGCTTTGGCCTCCTACTTTAGCACGTAAGGGGTTTTCGGGATTTTTACT
ACAGAAGCCATCATACTACTAGTGACGAAACAACTGTTTGTAGCTTACGA
CCGTTAGTGCTCTGTTGCGTCTTCTTGAACTGAGTCTTCGTCTTCCCTCC
CTCCCGTTGGTCGTTTGTTCTTCGTCGGCGCGGCATTTCTTTTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTGTCTTTGTCTTTGTCTCTGTATTTG
TCTACTACGCACGGTTCTGCTTGCTGCCTTCGCGCAGCACGAGCTGTCGT
TCACGAAGAAGCAATGTCCACTCTTCCTCACTAAGCTCCTCCAAAACATC
TTCCGAAGTTGAATACAATACGCAAGGAAGAGGACCGGCGGGGCAATACA
CAAGGTACACGCACATCTGGCGCCCCCCCCCCCCCAAGCTTGTGGAAGTC
CACGAATTTTTCCACAGTGTTCAGAGGAAAAGACCTGGGGAATACGTACA
TAACTGTCCCCTGCCACCCCCCGGCAAATTACTGCTTGGTGCTTTTTCAT
TTTTAACCAAGGTACCTACTGCAGATAGGCGTACAGGTACAATCTCGAGG
GCTGCTGTATGCCTCTCCAACGCCGGAGTGTTGAAATTCCCGCGCTTGAC
CCGCCCTCGGTGTCCAGAGTGAAACAATAACATTTTAATCTGGGTGGTCC
TTGCTGTGTCTATTCCGGCGCGCGCGCTGCGACTTGTCTCCGTGCTCTGT
AGAAAAGCTGTGTGCAAGGAATGAATGGTTGAATTTGCGTCGTGGTCGTT
AATTGAGTTCGCTCGATACGACACGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14649:1649..6226-

>mRNA_H-paniculata_contig14649.2779.1 ID=mRNA_H-paniculata_contig14649.2779.1|Name=mRNA_H-paniculata_contig14649.2779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig14649:1649..6226- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGCACGGCGGTAAACCATCTCCATCGACGAGCGGTACGATTCGA
CCTCAAAGTCCCCGCAGACCAAGATTCGGACGCCTTCATCTACAACGCCA
CGGGCAACACCCATCTCCTACCGGAGTACATGAAGATGGTGTGCACGGCG
GTAAACCATCTCCATCGACGAGCGGTACGATTCGACCTCAAAGTCCCCGC
AGACCAAGATTCGGACGCCTTCATCTACAACGCCACGGGCAACACCCATC
TCCTACCGGAGTACATGAAGCACGAGCTGTCGTTCACGAAGAAGCAATGT
CCACTCTTCCTCACTAAGCTCCTCCAAAACATCTTCCGAAGTTGACACGA
GCTGTCGTTCACGAAGAAGCAATGTCCACTCTTCCTCACTAAGCTCCTCC
AAAACATCTTCCGAAGTTGA
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