mRNA_H-paniculata_contig14642.2778.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14642.2778.1
Unique NamemRNA_H-paniculata_contig14642.2778.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14642.2778.1 vs. uniprot
Match: A0A6H5JRB6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.060e-6
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  610 DPGILYLNPATSETTRVPPPELLAQSEEADEAGGYLIFVPSSVFVAAAVGA 762
            D G +YLN AT ET R PP EL+A +++A+ AG YL+FVPS  FVAAA GA
Sbjct:  437 DQGPVYLNTATMETVREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGA 487
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14642.2778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRB6_9PHAE2.060e-660.78RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14642contigH-paniculata_contig14642:2860..5397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1197
Cds size1197
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14642.2778.1prot_H-paniculata_contig14642.2778.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14642 2860..5397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.1430943-CDS-H-paniculata_contig14642:2859..30841622929165.1430943-CDS-H-paniculata_contig14642:2859..3084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14642 2860..3084 -
1691480756.5922952-CDS-H-paniculata_contig14642:2859..30841691480756.5922952-CDS-H-paniculata_contig14642:2859..3084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14642 2860..3084 -
1622929165.1622884-CDS-H-paniculata_contig14642:4066..47651622929165.1622884-CDS-H-paniculata_contig14642:4066..4765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14642 4067..4765 -
1691480756.6059113-CDS-H-paniculata_contig14642:4066..47651691480756.6059113-CDS-H-paniculata_contig14642:4066..4765Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14642 4067..4765 -
1622929165.188005-CDS-H-paniculata_contig14642:5124..53971622929165.188005-CDS-H-paniculata_contig14642:5124..5397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14642 5125..5397 -
1691480756.6166677-CDS-H-paniculata_contig14642:5124..53971691480756.6166677-CDS-H-paniculata_contig14642:5124..5397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14642 5125..5397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14642.2778.1

>prot_H-paniculata_contig14642.2778.1 ID=prot_H-paniculata_contig14642.2778.1|Name=mRNA_H-paniculata_contig14642.2778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=399bp
QARKKAVSDAKAEGSSSNKRPRIEEVTVVQPASKSSGGSNGGDNCTPTAV
ERTRGLMAKHEGHGGGGGEGGAVEGIAEGAKCGVVGGVDMQILGVAGKMI
RTHGPWRCAFAMGNGVPAAPPFPRRHANLEQQQQQQHRHPTLTPGPANSI
IVSKDPASISETGNSVGSSTKDSPPLLTSGRIAKQQERTAAAAPAAPAEV
AVLDPGILYLNPATSETTRVPPPELLAQSEEADEAGGYLIFVPSSVFVAA
AVGARGRAGGVAAAATAPPSKFSSSSMCSSQSKLEKVAVAVAESSPGYDG
FGSRMLGLPGAADAAAKAISATCMEASPTPSLGGSRISGKTAAAAASAHC
AAWTPTANNNDTLTVVPALRQGEEAWDRLASADAGDNKGDNSGVSGGGG
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mRNA from alignment at H-paniculata_contig14642:2860..5397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14642.2778.1 ID=mRNA_H-paniculata_contig14642.2778.1|Name=mRNA_H-paniculata_contig14642.2778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2538bp|location=Sequence derived from alignment at H-paniculata_contig14642:2860..5397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGAGAAAGAAGGCTGTGAGTGATGCGAAAGCAGAGGGAAGCAGCAG
CAACAAGCGACCTCGTATAGAGGAAGTCACCGTCGTCCAGCCTGCTAGTA
AAAGTAGTGGTGGTAGTAATGGTGGCGATAACTGTACGCCTACGGCTGTG
GAAAGAACGCGAGGTCTGATGGCGAAGCACGAAGGGCATGGAGGAGGAGG
AGGAGAAGGAGGAGCTGTTGAAGGAATAGCGGAGGGCGCGAAATGTGGGG
TTGTTGGTGGGGTAGATATGCAGGTGGGTTTCATTTGCTTTTGTGGTGTA
CCTGACTGGTGGTGGTGGTAGTGGTGGTGGTTTGATGTTGTTGTCGTCGG
TGTTACGGTGTTACAAAAGTTGTCATTTGTGTGCCCGGTTGCCTCGCTTG
CCCCCCACTCCTATGCTTGTGTAATTTTGCTGATGATGTGTATACAAGTG
AAATTTGAGGTCAGCTATCTAGCTGCATAGCGTCAAGATGAGTACGAGGG
TTTTTTCATATTAGCGTTACAGCTTAGTCCTACCGACGGTGGAAAATGGT
TTGACTTGAAAGGGAATGAAAACTCCCCCCCCACCCCCCCATCCTCGATC
ATTGAACCGCTCCACGCTTACTTGTCTACCAGATCCTGGGCGTGGCGGGT
AAAATGATCCGTACCCACGGCCCCTGGCGATGCGCGTTTGCCATGGGAAA
CGGGGTTCCCGCGGCACCGCCCTTTCCCAGGAGGCACGCAAATCTGGAGC
AGCAGCAGCAGCAGCAGCATCGTCATCCTACGTTAACACCAGGCCCTGCC
AACAGCATCATCGTTAGCAAGGACCCGGCTAGTATCTCCGAGACTGGCAA
CAGCGTGGGAAGTAGTACGAAAGATTCCCCCCCCCTGCTGACATCAGGAA
GAATAGCAAAGCAGCAGGAGAGGACGGCAGCAGCAGCACCAGCAGCACCA
GCAGAGGTAGCGGTCTTGGATCCCGGGATCCTGTATCTCAATCCGGCGAC
CAGCGAAACGACACGAGTTCCACCGCCCGAGCTTCTCGCCCAATCAGAAG
AGGCTGATGAGGCGGGGGGGTATCTGATATTCGTGCCCTCGAGTGTGTTT
GTAGCGGCGGCAGTGGGAGCGAGGGGTAGGGCGGGGGGGGTGGCGGCAGC
GGCGACTGCACCACCATCAAAGTTCTCATCCTCGTCGATGTGTTCTTCGC
AGTCGAAGTTAGAGAAGGTTGCTGTTGCTGTTGCAGAGTCGTCGCCGGGA
TACGACGGTTTTGGGTCGAGGATGCTGGGTTTGCCGGGTGCTGCAGATGC
TGCTGCTAAGGCTATCAGCGCTACATGTATGGTGAGTTTAATACCATCAA
CAAACACCCTTACAAATGATGGTATACGTCTGATGCTATTTTCCTAACCC
AATTTTCTCGAGAAGCGAGAGGCCTGCACTGTCGAAACAGCAGGTCTATA
GAAAGATTTCGTTAAAATGTTTCCAACGATACCGCTATCAGTGTTTTGAG
CGTTGTTTTTGTAAAAAAAAATCGAGTTTGAAAAGTAAATCGGGGGGTGC
GATAGCAAAGATCGTTGCGGTAGTTAGTTCCTTATTTACGTTGTTGTGTG
ATAGGTGGTTTTAGATTGCAATAGCTCATCTGTAGTTGGGGCGGGGTGGG
CTGTCAGAAAGAATATTTGGGCTAATCAATAATAATAGTACACGTTGAAA
ATCAATTCCGTATATAGTTTTTAACGTTTAATGCTGACTGGTGTTTACTC
TCACTTTCGCTTATATAGGACTGACTGTACCGTTTTTTTTAATTCAAAAG
GTACACCTGTACGGTATTAGACTTGCAAAATTGTATAATTTTTTTTTTTT
TTTCCTGGACGATGTTTTCTTTTAGCTGCAATATGATGTCATTCACTACT
TGCTGTTCATTCGGCTATGCGTGAAATTATTTGCAACATAACAAAAACGG
AACTCATCAGACGTGTAAACTGAATGACGTCATCCTTATTTCCTTTCAAA
GCAATCTATTTCGTCCTATATTTTCATGACGTTATTATTTAAGTTAATAC
AGCTACGGGGGGAGACCACCCTGCCCATACAGTAAAATATACATGTTTAA
AGTTCTTGTTTTGCCCATAGCTTTCCTAGTGCCTTACTACGCACACACAT
ACGCATCCTCCCCATCGAAATATATATATATATATATATTTTTTTTTTTA
ATAATTTTTTTCTTACACAATCACAAGTTAGTTCAGACCTGAAAAATAAT
TGTTTACGAAACGACCGTTAAGTACCATGGACCGTATTTTCGTTTTCTGT
TTTTTTTTTCCAGGAGGCGTCGCCGACTCCGTCTCTCGGCGGGAGCAGAA
TATCCGGAAAGACAGCTGCCGCCGCCGCATCAGCTCATTGCGCTGCTTGG
ACGCCGACAGCTAACAACAATGACACACTGACAGTCGTACCCGCTCTCCG
ACAGGGGGAGGAAGCTTGGGATCGGCTAGCGTCGGCCGACGCAGGCGATA
ATAAGGGAGATAACAGCGGCGTCAGCGGCGGCGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14642:2860..5397-

>mRNA_H-paniculata_contig14642.2778.1 ID=mRNA_H-paniculata_contig14642.2778.1|Name=mRNA_H-paniculata_contig14642.2778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at H-paniculata_contig14642:2860..5397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGAGAAAGAAGGCTGTGAGTGATGCGAAAGCAGAGGGAAGCAGCAG
CAACAAGCGACCTCGTATAGAGGAAGTCACCGTCGTCCAGCCTGCTAGTA
AAAGTAGTGGTGGTAGTAATGGTGGCGATAACTGTACGCCTACGGCTGTG
GAAAGAACGCGAGGTCTGATGGCGAAGCACGAAGGGCATGGAGGAGGAGG
AGGAGAAGGAGGAGCTGTTGAAGGAATAGCGGAGGGCGCGAAATGTGGGG
TTGTTGGTGGGGTAGATATGCAGCAGGCGAGAAAGAAGGCTGTGAGTGAT
GCGAAAGCAGAGGGAAGCAGCAGCAACAAGCGACCTCGTATAGAGGAAGT
CACCGTCGTCCAGCCTGCTAGTAAAAGTAGTGGTGGTAGTAATGGTGGCG
ATAACTGTACGCCTACGGCTGTGGAAAGAACGCGAGGTCTGATGGCGAAG
CACGAAGGGCATGGAGGAGGAGGAGGAGAAGGAGGAGCTGTTGAAGGAAT
AGCGGAGGGCGCGAAATGTGGGGTTGTTGGTGGGGTAGATATGCAGATCC
TGGGCGTGGCGGGTAAAATGATCCGTACCCACGGCCCCTGGCGATGCGCG
TTTGCCATGGGAAACGGGGTTCCCGCGGCACCGCCCTTTCCCAGGAGGCA
CGCAAATCTGGAGCAGCAGCAGCAGCAGCAGCATCGTCATCCTACGTTAA
CACCAGGCCCTGCCAACAGCATCATCGTTAGCAAGGACCCGGCTAGTATC
TCCGAGACTGGCAACAGCGTGGGAAGTAGTACGAAAGATTCCCCCCCCCT
GCTGACATCAGGAAGAATAGCAAAGCAGCAGGAGAGGACGGCAGCAGCAG
CACCAGCAGCACCAGCAGAGGTAGCGGTCTTGGATCCCGGGATCCTGTAT
CTCAATCCGGCGACCAGCGAAACGACACGAGTTCCACCGCCCGAGCTTCT
CGCCCAATCAGAAGAGGCTGATGAGGCGGGGGGGTATCTGATATTCGTGC
CCTCGAGTGTGTTTGTAGCGGCGGCAGTGGGAGCGAGGGGTAGGGCGGGG
GGGGTGGCGGCAGCGGCGACTGCACCACCATCAAAGTTCTCATCCTCGTC
GATGTGTTCTTCGCAGTCGAAGTTAGAGAAGGTTGCTGTTGCTGTTGCAG
AGTCGTCGCCGGGATACGACGGTTTTGGGTCGAGGATGCTGGGTTTGCCG
GGTGCTGCAGATGCTGCTGCTAAGGCTATCAGCGCTACATGTATGATCCT
GGGCGTGGCGGGTAAAATGATCCGTACCCACGGCCCCTGGCGATGCGCGT
TTGCCATGGGAAACGGGGTTCCCGCGGCACCGCCCTTTCCCAGGAGGCAC
GCAAATCTGGAGCAGCAGCAGCAGCAGCAGCATCGTCATCCTACGTTAAC
ACCAGGCCCTGCCAACAGCATCATCGTTAGCAAGGACCCGGCTAGTATCT
CCGAGACTGGCAACAGCGTGGGAAGTAGTACGAAAGATTCCCCCCCCCTG
CTGACATCAGGAAGAATAGCAAAGCAGCAGGAGAGGACGGCAGCAGCAGC
ACCAGCAGCACCAGCAGAGGTAGCGGTCTTGGATCCCGGGATCCTGTATC
TCAATCCGGCGACCAGCGAAACGACACGAGTTCCACCGCCCGAGCTTCTC
GCCCAATCAGAAGAGGCTGATGAGGCGGGGGGGTATCTGATATTCGTGCC
CTCGAGTGTGTTTGTAGCGGCGGCAGTGGGAGCGAGGGGTAGGGCGGGGG
GGGTGGCGGCAGCGGCGACTGCACCACCATCAAAGTTCTCATCCTCGTCG
ATGTGTTCTTCGCAGTCGAAGTTAGAGAAGGTTGCTGTTGCTGTTGCAGA
GTCGTCGCCGGGATACGACGGTTTTGGGTCGAGGATGCTGGGTTTGCCGG
GTGCTGCAGATGCTGCTGCTAAGGCTATCAGCGCTACATGTATGGAGGCG
TCGCCGACTCCGTCTCTCGGCGGGAGCAGAATATCCGGAAAGACAGCTGC
CGCCGCCGCATCAGCTCATTGCGCTGCTTGGACGCCGACAGCTAACAACA
ATGACACACTGACAGTCGTACCCGCTCTCCGACAGGGGGAGGAAGCTTGG
GATCGGCTAGCGTCGGCCGACGCAGGCGATAATAAGGGAGATAACAGCGG
CGTCAGCGGCGGCGGGGGGGAGGCGTCGCCGACTCCGTCTCTCGGCGGGA
GCAGAATATCCGGAAAGACAGCTGCCGCCGCCGCATCAGCTCATTGCGCT
GCTTGGACGCCGACAGCTAACAACAATGACACACTGACAGTCGTACCCGC
TCTCCGACAGGGGGAGGAAGCTTGGGATCGGCTAGCGTCGGCCGACGCAG
GCGATAATAAGGGAGATAACAGCGGCGTCAGCGGCGGCGGGGGG
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