Homology
BLAST of mRNA_H-paniculata_contig14642.2778.1 vs. uniprot
Match: A0A6H5JRB6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB6_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 2.060e-6 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 Query: 610 DPGILYLNPATSETTRVPPPELLAQSEEADEAGGYLIFVPSSVFVAAAVGA 762
D G +YLN AT ET R PP EL+A +++A+ AG YL+FVPS FVAAA GA
Sbjct: 437 DQGPVYLNTATMETVREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGA 487
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1197 |
| Cds size | 1197 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14642.2778.1 >prot_H-paniculata_contig14642.2778.1 ID=prot_H-paniculata_contig14642.2778.1|Name=mRNA_H-paniculata_contig14642.2778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=399bp
QARKKAVSDAKAEGSSSNKRPRIEEVTVVQPASKSSGGSNGGDNCTPTAV
ERTRGLMAKHEGHGGGGGEGGAVEGIAEGAKCGVVGGVDMQILGVAGKMI
RTHGPWRCAFAMGNGVPAAPPFPRRHANLEQQQQQQHRHPTLTPGPANSI
IVSKDPASISETGNSVGSSTKDSPPLLTSGRIAKQQERTAAAAPAAPAEV
AVLDPGILYLNPATSETTRVPPPELLAQSEEADEAGGYLIFVPSSVFVAA
AVGARGRAGGVAAAATAPPSKFSSSSMCSSQSKLEKVAVAVAESSPGYDG
FGSRMLGLPGAADAAAKAISATCMEASPTPSLGGSRISGKTAAAAASAHC
AAWTPTANNNDTLTVVPALRQGEEAWDRLASADAGDNKGDNSGVSGGGG back to topmRNA from alignment at H-paniculata_contig14642:2860..5397- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14642.2778.1 ID=mRNA_H-paniculata_contig14642.2778.1|Name=mRNA_H-paniculata_contig14642.2778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2538bp|location=Sequence derived from alignment at H-paniculata_contig14642:2860..5397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGAGAAAGAAGGCTGTGAGTGATGCGAAAGCAGAGGGAAGCAGCAG
CAACAAGCGACCTCGTATAGAGGAAGTCACCGTCGTCCAGCCTGCTAGTA
AAAGTAGTGGTGGTAGTAATGGTGGCGATAACTGTACGCCTACGGCTGTG
GAAAGAACGCGAGGTCTGATGGCGAAGCACGAAGGGCATGGAGGAGGAGG
AGGAGAAGGAGGAGCTGTTGAAGGAATAGCGGAGGGCGCGAAATGTGGGG
TTGTTGGTGGGGTAGATATGCAGGTGGGTTTCATTTGCTTTTGTGGTGTA
CCTGACTGGTGGTGGTGGTAGTGGTGGTGGTTTGATGTTGTTGTCGTCGG
TGTTACGGTGTTACAAAAGTTGTCATTTGTGTGCCCGGTTGCCTCGCTTG
CCCCCCACTCCTATGCTTGTGTAATTTTGCTGATGATGTGTATACAAGTG
AAATTTGAGGTCAGCTATCTAGCTGCATAGCGTCAAGATGAGTACGAGGG
TTTTTTCATATTAGCGTTACAGCTTAGTCCTACCGACGGTGGAAAATGGT
TTGACTTGAAAGGGAATGAAAACTCCCCCCCCACCCCCCCATCCTCGATC
ATTGAACCGCTCCACGCTTACTTGTCTACCAGATCCTGGGCGTGGCGGGT
AAAATGATCCGTACCCACGGCCCCTGGCGATGCGCGTTTGCCATGGGAAA
CGGGGTTCCCGCGGCACCGCCCTTTCCCAGGAGGCACGCAAATCTGGAGC
AGCAGCAGCAGCAGCAGCATCGTCATCCTACGTTAACACCAGGCCCTGCC
AACAGCATCATCGTTAGCAAGGACCCGGCTAGTATCTCCGAGACTGGCAA
CAGCGTGGGAAGTAGTACGAAAGATTCCCCCCCCCTGCTGACATCAGGAA
GAATAGCAAAGCAGCAGGAGAGGACGGCAGCAGCAGCACCAGCAGCACCA
GCAGAGGTAGCGGTCTTGGATCCCGGGATCCTGTATCTCAATCCGGCGAC
CAGCGAAACGACACGAGTTCCACCGCCCGAGCTTCTCGCCCAATCAGAAG
AGGCTGATGAGGCGGGGGGGTATCTGATATTCGTGCCCTCGAGTGTGTTT
GTAGCGGCGGCAGTGGGAGCGAGGGGTAGGGCGGGGGGGGTGGCGGCAGC
GGCGACTGCACCACCATCAAAGTTCTCATCCTCGTCGATGTGTTCTTCGC
AGTCGAAGTTAGAGAAGGTTGCTGTTGCTGTTGCAGAGTCGTCGCCGGGA
TACGACGGTTTTGGGTCGAGGATGCTGGGTTTGCCGGGTGCTGCAGATGC
TGCTGCTAAGGCTATCAGCGCTACATGTATGGTGAGTTTAATACCATCAA
CAAACACCCTTACAAATGATGGTATACGTCTGATGCTATTTTCCTAACCC
AATTTTCTCGAGAAGCGAGAGGCCTGCACTGTCGAAACAGCAGGTCTATA
GAAAGATTTCGTTAAAATGTTTCCAACGATACCGCTATCAGTGTTTTGAG
CGTTGTTTTTGTAAAAAAAAATCGAGTTTGAAAAGTAAATCGGGGGGTGC
GATAGCAAAGATCGTTGCGGTAGTTAGTTCCTTATTTACGTTGTTGTGTG
ATAGGTGGTTTTAGATTGCAATAGCTCATCTGTAGTTGGGGCGGGGTGGG
CTGTCAGAAAGAATATTTGGGCTAATCAATAATAATAGTACACGTTGAAA
ATCAATTCCGTATATAGTTTTTAACGTTTAATGCTGACTGGTGTTTACTC
TCACTTTCGCTTATATAGGACTGACTGTACCGTTTTTTTTAATTCAAAAG
GTACACCTGTACGGTATTAGACTTGCAAAATTGTATAATTTTTTTTTTTT
TTTCCTGGACGATGTTTTCTTTTAGCTGCAATATGATGTCATTCACTACT
TGCTGTTCATTCGGCTATGCGTGAAATTATTTGCAACATAACAAAAACGG
AACTCATCAGACGTGTAAACTGAATGACGTCATCCTTATTTCCTTTCAAA
GCAATCTATTTCGTCCTATATTTTCATGACGTTATTATTTAAGTTAATAC
AGCTACGGGGGGAGACCACCCTGCCCATACAGTAAAATATACATGTTTAA
AGTTCTTGTTTTGCCCATAGCTTTCCTAGTGCCTTACTACGCACACACAT
ACGCATCCTCCCCATCGAAATATATATATATATATATATTTTTTTTTTTA
ATAATTTTTTTCTTACACAATCACAAGTTAGTTCAGACCTGAAAAATAAT
TGTTTACGAAACGACCGTTAAGTACCATGGACCGTATTTTCGTTTTCTGT
TTTTTTTTTCCAGGAGGCGTCGCCGACTCCGTCTCTCGGCGGGAGCAGAA
TATCCGGAAAGACAGCTGCCGCCGCCGCATCAGCTCATTGCGCTGCTTGG
ACGCCGACAGCTAACAACAATGACACACTGACAGTCGTACCCGCTCTCCG
ACAGGGGGAGGAAGCTTGGGATCGGCTAGCGTCGGCCGACGCAGGCGATA
ATAAGGGAGATAACAGCGGCGTCAGCGGCGGCGGGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig14642:2860..5397- >mRNA_H-paniculata_contig14642.2778.1 ID=mRNA_H-paniculata_contig14642.2778.1|Name=mRNA_H-paniculata_contig14642.2778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at H-paniculata_contig14642:2860..5397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGAGAAAGAAGGCTGTGAGTGATGCGAAAGCAGAGGGAAGCAGCAG
CAACAAGCGACCTCGTATAGAGGAAGTCACCGTCGTCCAGCCTGCTAGTA
AAAGTAGTGGTGGTAGTAATGGTGGCGATAACTGTACGCCTACGGCTGTG
GAAAGAACGCGAGGTCTGATGGCGAAGCACGAAGGGCATGGAGGAGGAGG
AGGAGAAGGAGGAGCTGTTGAAGGAATAGCGGAGGGCGCGAAATGTGGGG
TTGTTGGTGGGGTAGATATGCAGCAGGCGAGAAAGAAGGCTGTGAGTGAT
GCGAAAGCAGAGGGAAGCAGCAGCAACAAGCGACCTCGTATAGAGGAAGT
CACCGTCGTCCAGCCTGCTAGTAAAAGTAGTGGTGGTAGTAATGGTGGCG
ATAACTGTACGCCTACGGCTGTGGAAAGAACGCGAGGTCTGATGGCGAAG
CACGAAGGGCATGGAGGAGGAGGAGGAGAAGGAGGAGCTGTTGAAGGAAT
AGCGGAGGGCGCGAAATGTGGGGTTGTTGGTGGGGTAGATATGCAGATCC
TGGGCGTGGCGGGTAAAATGATCCGTACCCACGGCCCCTGGCGATGCGCG
TTTGCCATGGGAAACGGGGTTCCCGCGGCACCGCCCTTTCCCAGGAGGCA
CGCAAATCTGGAGCAGCAGCAGCAGCAGCAGCATCGTCATCCTACGTTAA
CACCAGGCCCTGCCAACAGCATCATCGTTAGCAAGGACCCGGCTAGTATC
TCCGAGACTGGCAACAGCGTGGGAAGTAGTACGAAAGATTCCCCCCCCCT
GCTGACATCAGGAAGAATAGCAAAGCAGCAGGAGAGGACGGCAGCAGCAG
CACCAGCAGCACCAGCAGAGGTAGCGGTCTTGGATCCCGGGATCCTGTAT
CTCAATCCGGCGACCAGCGAAACGACACGAGTTCCACCGCCCGAGCTTCT
CGCCCAATCAGAAGAGGCTGATGAGGCGGGGGGGTATCTGATATTCGTGC
CCTCGAGTGTGTTTGTAGCGGCGGCAGTGGGAGCGAGGGGTAGGGCGGGG
GGGGTGGCGGCAGCGGCGACTGCACCACCATCAAAGTTCTCATCCTCGTC
GATGTGTTCTTCGCAGTCGAAGTTAGAGAAGGTTGCTGTTGCTGTTGCAG
AGTCGTCGCCGGGATACGACGGTTTTGGGTCGAGGATGCTGGGTTTGCCG
GGTGCTGCAGATGCTGCTGCTAAGGCTATCAGCGCTACATGTATGATCCT
GGGCGTGGCGGGTAAAATGATCCGTACCCACGGCCCCTGGCGATGCGCGT
TTGCCATGGGAAACGGGGTTCCCGCGGCACCGCCCTTTCCCAGGAGGCAC
GCAAATCTGGAGCAGCAGCAGCAGCAGCAGCATCGTCATCCTACGTTAAC
ACCAGGCCCTGCCAACAGCATCATCGTTAGCAAGGACCCGGCTAGTATCT
CCGAGACTGGCAACAGCGTGGGAAGTAGTACGAAAGATTCCCCCCCCCTG
CTGACATCAGGAAGAATAGCAAAGCAGCAGGAGAGGACGGCAGCAGCAGC
ACCAGCAGCACCAGCAGAGGTAGCGGTCTTGGATCCCGGGATCCTGTATC
TCAATCCGGCGACCAGCGAAACGACACGAGTTCCACCGCCCGAGCTTCTC
GCCCAATCAGAAGAGGCTGATGAGGCGGGGGGGTATCTGATATTCGTGCC
CTCGAGTGTGTTTGTAGCGGCGGCAGTGGGAGCGAGGGGTAGGGCGGGGG
GGGTGGCGGCAGCGGCGACTGCACCACCATCAAAGTTCTCATCCTCGTCG
ATGTGTTCTTCGCAGTCGAAGTTAGAGAAGGTTGCTGTTGCTGTTGCAGA
GTCGTCGCCGGGATACGACGGTTTTGGGTCGAGGATGCTGGGTTTGCCGG
GTGCTGCAGATGCTGCTGCTAAGGCTATCAGCGCTACATGTATGGAGGCG
TCGCCGACTCCGTCTCTCGGCGGGAGCAGAATATCCGGAAAGACAGCTGC
CGCCGCCGCATCAGCTCATTGCGCTGCTTGGACGCCGACAGCTAACAACA
ATGACACACTGACAGTCGTACCCGCTCTCCGACAGGGGGAGGAAGCTTGG
GATCGGCTAGCGTCGGCCGACGCAGGCGATAATAAGGGAGATAACAGCGG
CGTCAGCGGCGGCGGGGGGGAGGCGTCGCCGACTCCGTCTCTCGGCGGGA
GCAGAATATCCGGAAAGACAGCTGCCGCCGCCGCATCAGCTCATTGCGCT
GCTTGGACGCCGACAGCTAACAACAATGACACACTGACAGTCGTACCCGC
TCTCCGACAGGGGGAGGAAGCTTGGGATCGGCTAGCGTCGGCCGACGCAG
GCGATAATAAGGGAGATAACAGCGGCGTCAGCGGCGGCGGGGGG back to top
|