mRNA_H-paniculata_contig14632.2775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14632.2775.1
Unique NamemRNA_H-paniculata_contig14632.2775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14632.2775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14632contigH-paniculata_contig14632:5750..6385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size636
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14632.2775.1prot_H-paniculata_contig14632.2775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14632 5767..6093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.4194868-UTR-H-paniculata_contig14632:5749..57661622929164.4194868-UTR-H-paniculata_contig14632:5749..5766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14632 5750..5766 +
1691480756.3518002-UTR-H-paniculata_contig14632:5749..57661691480756.3518002-UTR-H-paniculata_contig14632:5749..5766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14632 5750..5766 +
1622929164.4467647-UTR-H-paniculata_contig14632:6093..63851622929164.4467647-UTR-H-paniculata_contig14632:6093..6385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14632 6094..6385 +
1691480756.3683045-UTR-H-paniculata_contig14632:6093..63851691480756.3683045-UTR-H-paniculata_contig14632:6093..6385Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14632 6094..6385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.4319608-CDS-H-paniculata_contig14632:5766..60931622929164.4319608-CDS-H-paniculata_contig14632:5766..6093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14632 5767..6093 +
1691480756.3602529-CDS-H-paniculata_contig14632:5766..60931691480756.3602529-CDS-H-paniculata_contig14632:5766..6093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14632 5767..6093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14632.2775.1

>prot_H-paniculata_contig14632.2775.1 ID=prot_H-paniculata_contig14632.2775.1|Name=mRNA_H-paniculata_contig14632.2775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MISSMNIISLILCSTSTSRVIAQRVSVQALLASRLLNSLRVLSDTALELD
CTGRGFDRASTLELALPPSGLPVSVSPPAEPVSPPPSSASQGSLPVTVGP
ERNACSSL*
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mRNA from alignment at H-paniculata_contig14632:5750..6385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14632.2775.1 ID=mRNA_H-paniculata_contig14632.2775.1|Name=mRNA_H-paniculata_contig14632.2775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=636bp|location=Sequence derived from alignment at H-paniculata_contig14632:5750..6385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGAGTAACGCCAGGCATGATTTCTTCCATGAATATTATCTCGTTAATT
TTGTGTAGCACGTCAACCTCCAGAGTGATCGCACAGAGAGTATCAGTACA
AGCGTTGTTGGCCAGTCGCCTCCTCAACTCGTTGCGAGTCTTGTCGGATA
CCGCACTGGAGTTAGATTGCACTGGTCGAGGATTCGACCGTGCATCCACC
CTAGAACTAGCTCTACCACCATCAGGTTTACCTGTATCAGTGTCTCCACC
AGCAGAACCAGTATCACCACCACCGTCTTCCGCTTCACAAGGGTCACTCC
CGGTTACGGTTGGCCCAGAAAGAAATGCCTGCAGTAGCTTATGAAGCTTA
CGATAGTCAGTACGCTTTGTTCGATCCACAGGAGCGTAGACATTGCTTGT
TGGGGAGGCCCGAAAGTCGGGAGAAGAAGTGTACTGGCGCACATCGTTGA
GGAAGTCGTATCCGGTGTTATAGTCAGATTCCCCCCCCCAACGAGATGAC
CCTGGAGTCAATTGCGGGATCGTTCAGCACCGGGAGCGGCGTTTCGACTC
TGAAGATCGCGAGAGCATCGCTCTTGCCACGCCTGACACCGAACGCCTCC
AGTTGGACCTATCTGCATAATCTGCGTCTACATACA
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Coding sequence (CDS) from alignment at H-paniculata_contig14632:5750..6385+

>mRNA_H-paniculata_contig14632.2775.1 ID=mRNA_H-paniculata_contig14632.2775.1|Name=mRNA_H-paniculata_contig14632.2775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig14632:5750..6385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTCTTCCATGAATATTATCTCGTTAATTTTGTGTAGCACGTCAAC
CTCCAGAGTGATCGCACAGAGAGTATCAGTACAAGCGTTGTTGGCCAGTC
GCCTCCTCAACTCGTTGCGAGTCTTGTCGGATACCGCACTGGAGTTAGAT
TGCACTGGTCGAGGATTCGACCGTGCATCCACCCTAGAACTAGCTCTACC
ACCATCAGGTTTACCTGTATCAGTGTCTCCACCAGCAGAACCAGTATCAC
CACCACCGTCTTCCGCTTCACAAGGGTCACTCCCGGTTACGGTTGGCCCA
GAAAGAAATGCCTGCAGTAGCTTATGAATGATTTCTTCCATGAATATTAT
CTCGTTAATTTTGTGTAGCACGTCAACCTCCAGAGTGATCGCACAGAGAG
TATCAGTACAAGCGTTGTTGGCCAGTCGCCTCCTCAACTCGTTGCGAGTC
TTGTCGGATACCGCACTGGAGTTAGATTGCACTGGTCGAGGATTCGACCG
TGCATCCACCCTAGAACTAGCTCTACCACCATCAGGTTTACCTGTATCAG
TGTCTCCACCAGCAGAACCAGTATCACCACCACCGTCTTCCGCTTCACAA
GGGTCACTCCCGGTTACGGTTGGCCCAGAAAGAAATGCCTGCAGTAGCTT
ATGA
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