mRNA_H-paniculata_contig14631.2774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14631.2774.1
Unique NamemRNA_H-paniculata_contig14631.2774.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14631.2774.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.220e-17
Identity = 53/144 (36.81%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:    1 MMDRLLQLKNAIVEYLRAHPNNVRKLSTNEWRVTEEVRSLLDPVAEVTTTIQGGAGGCLSDMTFLMQELLSVLNE---PI----------------TDTIEMDEQKSEAQTTREVLMEVIRIKKIDLVSSSIEHVTLLLDPRYK 375
            MMDR+L LK  I EY + +P N RKL+ NEW +T EV SLL  V+EVT  +QG     +    F++ EL+ +L E   PI                TD  ++ +  +EAQ   EVL E +R K +     ++E ++ L+DPR +
Sbjct:  271 MMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGVGSAQVAVERLSALMDPRLR 414
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BLAST of mRNA_H-paniculata_contig14631.2774.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.260e-17
Identity = 54/144 (37.50%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:    1 MMDRLLQLKNAIVEYLRAHPNNVRKLSTNEWRVTEEVRSLLDPVAEVTTTIQGGAGGCLSDMTFLMQELLSVLNE---PI----------------TDTIEMDEQKSEAQTTREVLMEVIRIKKIDLVSSSIEHVTLLLDPRYK 375
            MMDR+L LK  I EY + +P N RKL+ NEW +T EV SLL  V+EVT  +QG     +    F++ EL+ +L E   PI                TD  ++ +  +EAQ   EVL E +R K +     ++E ++ L+DPR K
Sbjct:  466 MMDRVLALKKPISEYFKKYPQNERKLTPNEWTITNEVCSLLSDVSEVTIRMQGSVDTHVGQAMFILHELIEMLGEDTHPIRQPNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRK 609
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BLAST of mRNA_H-paniculata_contig14631.2774.1 vs. uniprot
Match: A0A6G0W4S3_APHCR (Zinc finger BED domain-containing protein 4-like isoform X2 n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0W4S3_APHCR)

HSP 1 Score: 51.6 bits (122), Expect = 5.320e-5
Identity = 34/126 (26.98%), Postives = 64/126 (50.79%), Query Frame = 1 
Query:    1 MMDRLLQLKNAIVEYLRAHPNNVRKLSTNEWRVTEEVRSLLDPVAEVTTTIQGGAGGCLSDMTFLMQELLSVLNEPITDTIEMDEQKSEAQTTREVLMEVIRIKKIDLVSSSIEHVTLLLDPRYKL 378
            M++RL  LKNAI+ +    P+++   + N+W V E + +LL P  E+T  I       +S++   +  L S LN P +    +        TT++V++  +  +  +++ +    +   LDPR+KL
Sbjct:  357 MLERLFNLKNAILIFSSEVPSSLPSFNANDWTVMESLLNLLRPFEELTKRISSNKS-IISEVIPAIMSLNSFLNHPSSIHFGVG-------TTKDVMLSRLHKRFENVMKNKNLILATFLDPRFKL 474
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BLAST of mRNA_H-paniculata_contig14631.2774.1 vs. uniprot
Match: X1WWT1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1WWT1_ACYPI)

HSP 1 Score: 49.3 bits (116), Expect = 7.870e-5
Identity = 32/126 (25.40%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:    1 MMDRLLQLKNAIVEYLRAHPNNVRKLSTNEWRVTEEVRSLLDPVAEVTTTIQGGAGGCLSDMTFLMQELLSVLNEPITDTIEMDEQKSEAQTTREVLMEVIRIKKIDLVSSSIEHVTLLLDPRYKL 378
            M++RL  LKNA++ +    P+++   + N+W + E + +LL P  E+T  I       +S++   +  L S LN P +    +        TTR+V++  +  +  +++ +    +    DPR+KL
Sbjct:    1 MLERLFNLKNAVLIFTSESPSSLPTFNANDWTLIEPLLNLLRPFEELTKRISSNKS-IISEVIPDVISLYSFLNHPRSVNFGVG-------TTRDVMLSRLHKQFENVIKNENLILATFFDPRFKL 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14631.2774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE1.220e-1736.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.260e-1737.50Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6G0W4S3_APHCR5.320e-526.98Zinc finger BED domain-containing protein 4-like i... [more]
X1WWT1_ACYPI7.870e-525.40Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14631contigH-paniculata_contig14631:2421..2810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929164.3800406-CDS-H-paniculata_contig14631:2420..28101622929164.3800406-CDS-H-paniculata_contig14631:2420..2810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14631 2421..2810 -
1691480756.3436506-CDS-H-paniculata_contig14631:2420..28101691480756.3436506-CDS-H-paniculata_contig14631:2420..2810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14631 2421..2810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14631.2774.1prot_H-paniculata_contig14631.2774.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14631 2421..2810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14631.2774.1

>prot_H-paniculata_contig14631.2774.1 ID=prot_H-paniculata_contig14631.2774.1|Name=mRNA_H-paniculata_contig14631.2774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MMDRLLQLKNAIVEYLRAHPNNVRKLSTNEWRVTEEVRSLLDPVAEVTTT
IQGGAGGCLSDMTFLMQELLSVLNEPITDTIEMDEQKSEAQTTREVLMEV
IRIKKIDLVSSSIEHVTLLLDPRYKLCSK*
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mRNA from alignment at H-paniculata_contig14631:2421..2810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14631.2774.1 ID=mRNA_H-paniculata_contig14631.2774.1|Name=mRNA_H-paniculata_contig14631.2774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig14631:2421..2810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGACCGGCTTCTGCAGTTGAAGAATGCCATCGTGGAGTACTTGAG
AGCCCACCCGAACAACGTTCGGAAGCTGAGCACCAACGAGTGGCGGGTCA
CCGAGGAGGTACGCAGCCTGCTTGATCCTGTGGCCGAAGTGACGACTACG
ATTCAGGGCGGGGCGGGCGGCTGCCTAAGCGATATGACGTTCCTCATGCA
AGAGCTGCTGTCAGTGCTGAACGAACCCATAACGGACACCATAGAGATGG
ACGAACAGAAAAGTGAGGCACAAACGACGAGGGAGGTCCTTATGGAGGTG
ATAAGGATAAAGAAGATTGATTTAGTGTCCAGCTCTATCGAGCACGTTAC
CCTCCTTCTTGACCCACGGTACAAACTCTGTTCAAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14631:2421..2810-

>mRNA_H-paniculata_contig14631.2774.1 ID=mRNA_H-paniculata_contig14631.2774.1|Name=mRNA_H-paniculata_contig14631.2774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig14631:2421..2810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGACCGGCTTCTGCAGTTGAAGAATGCCATCGTGGAGTACTTGAG
AGCCCACCCGAACAACGTTCGGAAGCTGAGCACCAACGAGTGGCGGGTCA
CCGAGGAGGTACGCAGCCTGCTTGATCCTGTGGCCGAAGTGACGACTACG
ATTCAGGGCGGGGCGGGCGGCTGCCTAAGCGATATGACGTTCCTCATGCA
AGAGCTGCTGTCAGTGCTGAACGAACCCATAACGGACACCATAGAGATGG
ACGAACAGAAAAGTGAGGCACAAACGACGAGGGAGGTCCTTATGGAGGTG
ATAAGGATAAAGAAGATTGATTTAGTGTCCAGCTCTATCGAGCACGTTAC
CCTCCTTCTTGACCCACGGTACAAACTCTGTTCAAAGTAAATGATGGACC
GGCTTCTGCAGTTGAAGAATGCCATCGTGGAGTACTTGAGAGCCCACCCG
AACAACGTTCGGAAGCTGAGCACCAACGAGTGGCGGGTCACCGAGGAGGT
ACGCAGCCTGCTTGATCCTGTGGCCGAAGTGACGACTACGATTCAGGGCG
GGGCGGGCGGCTGCCTAAGCGATATGACGTTCCTCATGCAAGAGCTGCTG
TCAGTGCTGAACGAACCCATAACGGACACCATAGAGATGGACGAACAGAA
AAGTGAGGCACAAACGACGAGGGAGGTCCTTATGGAGGTGATAAGGATAA
AGAAGATTGATTTAGTGTCCAGCTCTATCGAGCACGTTACCCTCCTTCTT
GACCCACGGTACAAACTCTGTTCAAAGTAA
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