prot_H-paniculata_contig1462.2770.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1462.2770.1
Unique Nameprot_H-paniculata_contig1462.2770.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length396
Homology
BLAST of mRNA_H-paniculata_contig1462.2770.1 vs. uniprot
Match: A0A6H5J909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE)

HSP 1 Score: 388 bits (996), Expect = 7.870e-123
Identity = 215/420 (51.19%), Postives = 278/420 (66.19%), Query Frame = 0
Query:    2 KDPELLFRHFMLHKEYPKAVYVMATEAHAEQGSNMHIRDRVDCLVKAISACHKCDLDSAQMVMPGWSLSHAKRQALEDEMDVMLTQERLLRNLEASMAPLQRLKEKGRLTEDLEGELDERARVANEWTWGIAGPTELYERAMAFFLWEGCLQLLQCCGKDEPALARKLVRSIIWREVPMYTREGEASHTHAFITRGRSRKGEVAVDDVRLVLDDGA---------------AFEDDGWFGPLLEKTQALAHELLSRKETYVLPVDTLCRELQLIADEYYYAGHGEAEVPPPCVAASVRQAGVSPTALLDAYESMNRTCYPKDDELMLRWLEVMTEVLTWACQ--------TQQPGVLAESVRPERVERLAHDTMRGLETVRASPRM---------QDPGAEYKIAELCRQLEDKVLSSVR 389
            +DPE LFRH+ML K+YPKAV++M  EA  E GS +H+R RV+CL+KAISACHKCDLDSAQMV PGWSL+HAK + +EDE DV+L QERLL  L+A+MAPL+RL ++GR TE L  EL ER R+A  WT  I  P+ELY +A   FLWEGCL+L+QCC  DEP +A++L+RSIIWREVP  +R G       FI+  R R GEV VDDVR  LD G                AFEDDGWF PLL+K   L+ ELL+ K ++VL V+TLC ELQ+IADE++ AG   + +   CV  +V +AG+S  ALLDAYE +N+  YP DD   LR   VM  +L  A          T   G+++E++RPER+ERLAHDT+ GL+++R S            +D GA   + E+ R++ DK++ S R
Sbjct:  567 RDPEDLFRHYMLSKDYPKAVHLMDREARVEAGSGVHVRHRVECLLKAISACHKCDLDSAQMVAPGWSLNHAKLRTMEDERDVLLVQERLLSELKATMAPLERLAQEGRGTEGLIAELSERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKRLIRSIIWREVPSVSRGGSKCRAQVFISSMRDRPGEVEVDDVRQELDRGLGGGGGDGGTRAGRRIAFEDDGWFTPLLDKMSVLSQELLAHKASFVLSVETLCLELQMIADEFHEAGGSASAL---CVVEAVGRAGLSALALLDAYEYLNQHHYPSDDHARLRRFAVMARLLELAAAGGDGNKAATGGVGLVSETIRPERLERLAHDTLAGLDSLRFSSSAGAARGDDADRDAGARELVEEVRRKV-DKLVRSPR 982          
BLAST of mRNA_H-paniculata_contig1462.2770.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 3.420e-90
Identity = 191/435 (43.91%), Postives = 252/435 (57.93%), Query Frame = 0
Query:    2 KDPELLFRHFMLHKEYPKAVYVMATEAHAEQGSNMHIRDRVDCLVKAISACHKCDLDSAQMVMPGWSLSHAKRQALEDEMDVMLTQERLLRNLEASMAPLQRLKEKGRLTEDLEGELDERARVANEWTWGIAGPTELYERAMAFFLWEGCLQLLQCCGKDEPALARKLVRS--------------------------IIWREVP--MYTREG---EASHTHAFITRGRSRKGEVAVDDVRLVLDDGAAFEDDGWFGPLLE-KTQALAHELLSRKETYVLPVDTLCRELQLIADEYYYAGHGEAEVPPPCVAASVRQAGVSPTALLDAYESMNRTCYPKDDELMLRWLEVMTEVLTWACQTQQP--------GVLAESVRPERVERLAHDTMRGLETVR------ASPRMQDPGAEYKIAELCRQLEDKVLSSVRT 390
            +DPE LFRH+ML KEYPKAV++M  EA  E  S +H+R RV+CL+KAISACHKCDLDSAQMV PGWSL+HAK + +EDE DV+L QERLL +L+A+M PL+RL ++GR TE L  EL ER R+A  WT  I  P+ELY +A   FLWEGCL+L+QCC  DEP +A+KL+R                           ++W   P  +   EG   +  H   F+  G  R G+                       PLLE K   L+ ELLS K ++VL V+TLC ELQ+IADE++ AG   + +   CV  +V +AG+S   LLDAYE +N+  YP DD   LR   VM  +L  A              G+++E+VRPER+ERLAHDT+ GL+++R      AS   +D   +    EL  ++  KV   VR+
Sbjct: 1088 RDPEDLFRHYMLSKEYPKAVHLMDCEARVEARSGVHVRHRVECLLKAISACHKCDLDSAQMVAPGWSLNHAKLRTMEDERDVLLVQERLLSDLKATMTPLERLAQEGRGTEGLLAELAERRRIAETWTTDIVDPSELYRQASGSFLWEGCLRLMQCCEFDEPIVAKKLIREKGRGGYLYVHVLLGGGGCGGGVRICLVVWHFYPNPLLNLEGCDRDGRHKSFFLL-GPQRPGDTP---------------------PLLEDKMSVLSQELLSHKASFVLSVETLCLELQMIADEFHEAGGSASAL---CVVEAVGRAGLSAVVLLDAYEYLNQHHYPSDDHARLRRFAVMARLLELAAAGGDGIKAAAGGVGLVSETVRPERLERLAHDTLAGLDSLRFSSSSAASAGGEDADRDAGARELLEEVRRKVDKLVRS 1497          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1462.2770.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J909_9PHAE7.870e-12351.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0M6_ECTSI3.420e-9043.91Nucleoporin_N domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004870Nucleoporin, Nup155-likePANTHERPTHR10350NUCLEAR PORE COMPLEX PROTEIN NUP155coord: 2..331

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1462contigH-paniculata_contig1462:18114..26047 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1462.2770.1mRNA_H-paniculata_contig1462.2770.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1462 17781..26106 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1462.2770.1 ID=prot_H-paniculata_contig1462.2770.1|Name=mRNA_H-paniculata_contig1462.2770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=396bp
MKDPELLFRHFMLHKEYPKAVYVMATEAHAEQGSNMHIRDRVDCLVKAIS
ACHKCDLDSAQMVMPGWSLSHAKRQALEDEMDVMLTQERLLRNLEASMAP
LQRLKEKGRLTEDLEGELDERARVANEWTWGIAGPTELYERAMAFFLWEG
CLQLLQCCGKDEPALARKLVRSIIWREVPMYTREGEASHTHAFITRGRSR
KGEVAVDDVRLVLDDGAAFEDDGWFGPLLEKTQALAHELLSRKETYVLPV
DTLCRELQLIADEYYYAGHGEAEVPPPCVAASVRQAGVSPTALLDAYESM
NRTCYPKDDELMLRWLEVMTEVLTWACQTQQPGVLAESVRPERVERLAHD
TMRGLETVRASPRMQDPGAEYKIAELCRQLEDKVLSSVRTQSRYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004870Nucleoporin_Nup155