prot_H-paniculata_contig1462.2768.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1462.2768.1
Unique Nameprot_H-paniculata_contig1462.2768.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length381
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1462.2768.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 338..371
e-value: 8.1E-7
score: 26.8
coord: 303..335
e-value: 0.0013
score: 16.8
coord: 48..80
e-value: 6.4E-7
score: 27.2
coord: 84..117
e-value: 1.1E-5
score: 23.3
coord: 118..151
e-value: 1.9E-4
score: 19.4
coord: 154..186
e-value: 1.8E-6
score: 25.8
coord: 239..268
e-value: 2.9E-4
score: 18.8
coord: 189..221
e-value: 9.9E-6
score: 23.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 12..37
e-value: 6.4E-4
score: 19.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 45..92
e-value: 2.0E-10
score: 40.7
coord: 334..381
e-value: 3.7E-11
score: 43.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 103..164
e-value: 7.1E-10
score: 38.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 116..150
score: 10.742
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 267..299
score: 6.292
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 186..220
score: 9.942
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 151..185
score: 11.378
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 232..266
score: 8.331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 46..80
score: 13.329
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 81..115
score: 10.402
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 335..369
score: 11.926
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 300..334
score: 9.58
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 370..381
score: 5.338
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 8.977
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 189..329
e-value: 9.4E-9
score: 34.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 39..126
e-value: 3.1E-26
score: 93.8
coord: 127..237
e-value: 1.7E-31
score: 111.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 238..381
e-value: 6.9E-46
score: 159.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 5..143
coord: 130..232
coord: 240..380

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1462contigH-paniculata_contig1462:3913..5652 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1462.2768.1mRNA_H-paniculata_contig1462.2768.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1462 3913..5661 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1462.2768.1 ID=prot_H-paniculata_contig1462.2768.1|Name=mRNA_H-paniculata_contig1462.2768.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=381bp
MPSAKVHPSVHCYNTAIWACGAAGKWERAVALLREMPLGGNSLSPDEITY
NSAIWACGKRGKWEEALKLLTEMQEVGLRPGLTSFNSVITAFGNGQQWQN
AVRLLRDMEKLGVKPDAISYNAAIVACRDSNQWGQALELLNEMPKVGIAP
DLASYSSAIRACGKGRQWQKAVSVLREMGNLGVKPTLASYNAAITACRDS
DQWEQALDLLNEMHLVGISPDLFSYSSTIYACSQGRHSAISACRKHGHWE
RATALLREMPSVGITPNVVSYTAAISTCTHKWERALALLREMPKKGIAPN
YHSYKAAIEACGRGRQWAQAVALLREMPGVGVLPNSATYATAIEACGYSG
RGDEALALFREMPRTGIAPNAVTYNAVITAC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf