mRNA_H-paniculata_contig14609.2764.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14609.2764.1
Unique NamemRNA_H-paniculata_contig14609.2764.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 2.710e-94
Identity = 170/453 (37.53%), Postives = 260/453 (57.40%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQ-INGCQVRNDNRGALHLAAKSNYCSRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTFA 1341
            +FK+KAD +FK RLV  G  Q+ G      +A V RL S R+  A+     W  Y LDV  AFLN      V+   APG E+ D TTG+  V  L++S+YGL QSP++WN  IN+ L    +  T SDPCVY   S D    L+++VDDIL+TG   +++   + +L++ F +TD+GEV  ++G+EV R+ + GT  +SQ  +   IL R+ M  ANP  TPG   +LS     D LL     + +Q + GSL++L Q TR+D+ ++V    R  +   Q H+ A K +L  LRG PD+PI Y + K  L+ ++D+S+       RSTTG +FF   GL+ + ++ Q   A +T EAEL AL+  A++ +Y+    +E+G +      + +D+ GAL +A+ + + SR+KH+  RF  L + T+  ++   H  S+  LA+I ++H  +  FA
Sbjct:  271 VFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFA 723          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 9.230e-94
Identity = 173/463 (37.37%), Postives = 267/463 (57.67%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQINGC-QVRNDNRGALHLAAKSNYCSRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTFARPCSKISPFG 1371
            +FK K DG+FK RLVV G  Q+ G D   ++A V R+ S R+  A+    +W  Y LDV  AFLN      V+   APG    +S TG+P V  L+RS+YGL QSP +WN T++  L    +  T SDPCVY   S +  + L+++VDDIL+TG   +++   + +L ++F +TD+GEV  ILG++V R+ + GT  +SQ  +V ++L+RF M  ANP  TPG   ++S     D +L     K YQ M GS+++L Q TRFD+ ++ +  ++  S   Q ++ A K +L  LRG P +PI Y R +  LA ++D+S+       RSTTG +FF A GL+ + ++ Q  TA ST EAE+ AL+  A++ +Y+    +EL  +  G   + +D+ GAL +A  + +  R+KH+T R+  + +     Q+   H  S  QLA+I +++  +  FA    +I  F 
Sbjct:  394 VFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 856          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 1.050e-93
Identity = 170/463 (36.72%), Postives = 264/463 (57.02%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQINGC-QVRNDNRGALHLAAKSNYCSRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTFARPCSKISPFG 1371
            +FK K DG+FK RLVV G  Q+ G D   ++A V R+ S R+  A+    +W  Y LDV  AFLN      V+   APG    +S TG+P V  L+RS+YGL QSP +WN T++  L    +  T SDPCVY   S +  + L+++VDDIL+TG   +++   + +L ++F +TD+GEV  ILG++V R+ + GT  +SQ  +V + L+RF M  ANP  T G   ++S     D +L     K YQ M GS+++L Q T+FD+ ++ +  ++  S   Q ++ A K +L  LRG P +PI Y R +  LA ++D+S+       RSTTG +FF A GL+ + ++ Q  TA ST EAE+ AL+  A++ +Y+    +EL  +  G   + +D+ GAL +A  + +  R+KH+  R+  + +     Q+   H  S  QLA+I +++  +  FA    +I  F 
Sbjct:   30 VFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 492          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 1.480e-92
Identity = 170/463 (36.72%), Postives = 265/463 (57.24%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQINGC-QVRNDNRGALHLAAKSNYCSRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTFARPCSKISPFG 1371
            +FK   DG+FK RLVV G  Q+ G D   ++A V R+ S R+  A+    +W  Y LDV  AFLN      V+   APG    +S TG+P V  L+RS+YGL QS  +WN T++  L  + +  T SDPCVY   S +  + L+++VDDIL+TG   +++   + +L ++F +TD+GEV  ILG++V R+ + GT  +SQ  +V ++L+RF M  ANP  TPG   ++S     D +L     K YQ M GS+++L Q TRFD+ ++ +  ++  S   Q ++ A K +L  LRG P +PI Y R +  LA ++D+S+       RSTTG +FF A GL+ + ++ Q  TA ST EAE+ AL+  A++ +Y+    +EL  +  G   + +D+ GAL +A  + +  R+KH+  R+  + +     Q+   H  S  QLA+I +++  +  FA    +I  F 
Sbjct:  238 VFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 700          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 2.010e-85
Identity = 159/400 (39.75%), Postives = 235/400 (58.75%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQING-CQVRNDNRGALHLA 1182
            +FK K DG+FK  LVV G  Q+ G D  S++A V R+ S R+   +    +W  Y LDV VAFLN      V+   APG    +S TG+P V  L+RS+YGL QSP +WN T+N  L+   +  T  DPCVY   S +  + L+++VDDIL+TG  D+ L+D + +L ++F +TD+GEV  ILG++V R+ + GT  +SQ  +V ++L+RF M  ANP  T G   ++S     D +L     K YQ M  S+++L Q TRFD+ ++ +  ++  S   Q +L A K +L  LRG P +PI Y R +  LA  +D+S+       RSTTG +FF A GL+ + ++ Q  TA ST EAE+ AL+  A++ IY+    +E   +  G   + +D+ GAL +A
Sbjct:  131 VFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVA 529          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 9.530e-85
Identity = 171/471 (36.31%), Postives = 265/471 (56.26%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAG-------YSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQG-IYLLEICSELGLQINGC-QVRNDNRGALHLAAKSNYCSRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTFARPCSKISPFG 1371
            +FK K DG+FK RL V G  Q+ G D  +  A V R+ S R+  A+    +W  Y LDV  AFLN      V+   APG    +S T +P V  L+RS+YGL QSP +WN T++  L    +  T SDPCVY   S ++ +  S++VDDIL+TG   +++   + +L ++F +TD+GEV  ILG++VPR+ + GT  +SQ  +V ++L+RF M  ANP  TPG   ++S     D +L     K YQ M GS+++L Q TRFD+ ++ +  ++  S   Q ++ A K +L  LRG P +PI Y R ++ LA        ++D+S+       RSTTG +FF A GL+ + ++ Q  TA ST EAE+ AL+  A++  +Y+    +EL  +  G   + +D+ GAL +A  + +  R+KH+  R+  + +     Q+   H  S  QLA+I +++  +  FA    +I  F 
Sbjct:  619 VFKKKLDGRFKARLAVGGHRQEPGQDYRN--APVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 1087          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 7.540e-83
Identity = 171/463 (36.93%), Postives = 260/463 (56.16%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQINGCQ--VRNDNRGALHLAAKSNYCSRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTFARPCSKISPF 1368
            +FK KADG FK R+V QGW+Q  G+DC ST+A V R++S R+   + +  +     +DV  AFL   ++E VF EQ PGFE  D   G   VM L +S+YGL QSP  W +TI+  L  + F    SDPCVY    N   + L+L+VDD+L+ G     +  V+ +L  +F +TDLGE SL+LGME+ R+++  T  +SQ  +  SIL+RF +S + PT TPG  +++S     D+LLD   T++YQ +VGSL+++ Q  R+DI ++    AR  +  ++ H+VA K  L  L G  D  ITY +   +LA +SD+++       +ST+  +   A+  + F S LQ  TA ST EAEL+A A    + ++   + +ELG      Q  V  DN   LH     ++ SR+KH+  RF  + +     ++   ++ + D LA+I ++H  +  F      I+ F
Sbjct: 1203 VFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 2.590e-82
Identity = 168/466 (36.05%), Postives = 256/466 (54.94%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRN-------------QLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQINGCQ--VRNDNRGALHLAAKSNYCSRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTF 1338
            +FK KADG FK R+V QGW+Q  G+DC ST+A V R++S R+   + +  +     +DV  AFL   ++E VF EQ PGFE  D   G   VM L +S+YGL QSP  W +TI+  L  + F    SDPCVY    N   + L+L+VDD+L+ G     +  + +             +L  +F +TDLGE S  LGM++ R+++  T  +SQ  +  SIL+RF MS + PT TPG  +++S     D+LLD   T++YQ +VGSL+++ Q  R+DI ++    AR  +  ++ H+VA K  L  L G  D  ITY +   +LA +SD+++       +ST+  +   A+  + F S LQ  TA ST EAEL+A A   K+ ++   + +ELG      Q  V  DN   LH     ++ SR+KH+  RF  + +     ++   ++ + D LA+I ++H  +  F
Sbjct:  182 VFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRF 646          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.890e-81
Identity = 155/409 (37.90%), Postives = 235/409 (57.46%), Query Frame = 1
Query:   22 GKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCT-----RSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQ-INGCQVRNDNRGALHLAAKSNYCSRSKHLTNRF 1230
            G+FK RLV  G  Q+ G      +A V RL S R+  A+     W  Y LDV  AFLN      V+   APG E+ D TTG+  V  L++S+YGL QSP++WN  IN+ L    +  T SDPCVY   S D    L+++VDDIL+TG   +++   + +L++ F +TD+GEV  ++G+EV R+ + GT  +SQ  +   IL R+ M  ANP  TPG   +LS     D LL     + +Q + GSL++L Q TR+D+ ++V    R  +   Q H+ A K +L  LRG PD+PI Y + +  L+ ++D+S+       RSTTG +FF   GL+ + ++ Q   A +T EAEL AL+  A++ +Y+    +E+G +      + +D+ GAL +A+ + + SR+KH+  RF
Sbjct: 1057 GRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRF 1465          
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 3.050e-78
Identity = 164/458 (35.81%), Postives = 252/458 (55.02%), Query Frame = 1
Query:    1 MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAKDWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIYGLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDILVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQHKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMVGSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIPITYSRSKLELAGYSDASYCTRSTTGTMFFFADGLVHFSSRLQKTTATSTTEAELIALAACAKQGIYLLEICSELGLQ-INGCQVRNDNRGALHLAAKSNYCSRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTFARPCSKISPFG 1371
            +FK KAD +FK+RLVVQG  Q+ GID    +A V R+ S R+  A+   + W  + +DV VAFL   + + V+ + APG +  D  TG   V  L+RS+YGL QSP +W  TI+  L  + F PT SDPCVY  GS DT + L+L+V+DIL++G    ++ D++ +L ++F ITD+GEV LILGM+V R+ + GT  +SQ  +V SIL+   M   NP               +D LL AA +K YQ + GSL++L Q  R+D  ++V    R  S   + H  A K  L  +RG PD+ I + R +  +A ++D+S+              G +  +   +K+T     E+EL A++  AK+  YL  +   L  + +    + +D+ G L LAA + + SR+KH+  RF  L +  + + +   H+ +   LA+I ++H +R  F     +I  FG
Sbjct:  432 VFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPP--------------ADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSF--------------GAIPDN---RKSTTGLQVESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQIKDFG 858          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14609.2764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF46_9PHAE2.710e-9437.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE9.230e-9437.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE1.050e-9336.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.480e-9236.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDU8_9PHAE2.010e-8539.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE9.530e-8536.31Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KJH6_9PHAE7.540e-8336.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE2.590e-8236.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE1.890e-8137.90Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5K9R3_9PHAE3.050e-7835.81Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14609contigH-paniculata_contig14609:3952..5328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score247.7
Seed ortholog evalue1.1e-62
Seed eggNOG ortholog4565.Traes_4DL_A8C4D7877.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INI6@38820,3M96M@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size1377
Cds size1377
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929163.0049062-CDS-H-paniculata_contig14609:3951..53281622929163.0049062-CDS-H-paniculata_contig14609:3951..5328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14609 3952..5328 -
1691480755.768377-CDS-H-paniculata_contig14609:3951..53281691480755.768377-CDS-H-paniculata_contig14609:3951..5328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14609 3952..5328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14609.2764.1prot_H-paniculata_contig14609.2764.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14609 3952..5328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14609.2764.1

>prot_H-paniculata_contig14609.2764.1 ID=prot_H-paniculata_contig14609.2764.1|Name=mRNA_H-paniculata_contig14609.2764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=459bp
MFKVKADGKFKIRLVVQGWSQKHGIDCESTFALVYRLESQRLPLALEIAK
DWTAYALDVQVAFLNGKLKESVFCEQAPGFEKTDSTTGQPYVMSLKRSIY
GLRQSPNVWNHTINNELRSMDFTPTISDPCVYSKGSNDTYLTLSLFVDDI
LVTGPTDKVLMDVRNQLVNKFTITDLGEVSLILGMEVPRNKQTGTHQLSQ
HKHVLSILDRFSMSLANPTKTPGTKTDLSAASNSDSLLDAAATKEYQDMV
GSLIFLTQRTRFDICFSVIHAARFTSALTQQHLVAVKRILPCLRGYPDIP
ITYSRSKLELAGYSDASYCTRSTTGTMFFFADGLVHFSSRLQKTTATSTT
EAELIALAACAKQGIYLLEICSELGLQINGCQVRNDNRGALHLAAKSNYC
SRSKHLTNRFSALCDWTRCKQLITDHISSSDQLAEILSQHCERVTFARPC
SKISPFGE*
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mRNA from alignment at H-paniculata_contig14609:3952..5328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14609.2764.1 ID=mRNA_H-paniculata_contig14609.2764.1|Name=mRNA_H-paniculata_contig14609.2764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1377bp|location=Sequence derived from alignment at H-paniculata_contig14609:3952..5328- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAAAGTGAAAGCAGACGGAAAGTTCAAGATTCGACTCGTGGTACA AGGCTGGTCGCAAAAACACGGAATAGACTGCGAGAGCACGTTTGCACTAG TATACAGACTGGAGAGCCAGAGACTGCCGCTCGCGCTTGAAATTGCAAAG GATTGGACAGCCTATGCACTGGATGTTCAAGTTGCTTTTCTAAACGGCAA ATTGAAGGAAAGCGTCTTCTGTGAACAGGCACCTGGATTCGAGAAGACGG ATTCCACTACAGGACAACCCTACGTGATGAGTTTGAAGAGATCAATATAT GGGTTGCGCCAAAGCCCAAATGTTTGGAACCATACCATCAACAACGAGCT GAGGAGCATGGACTTTACACCGACGATCTCGGATCCTTGTGTGTACAGTA AAGGAAGCAACGACACCTACCTTACGCTCAGCCTTTTCGTCGACGACATC CTAGTTACAGGACCAACAGACAAAGTACTAATGGATGTTCGCAACCAACT CGTGAACAAGTTCACCATTACGGACCTTGGAGAGGTATCGCTTATTCTTG GCATGGAGGTACCGCGCAACAAACAAACTGGCACCCATCAGCTATCACAG CACAAGCACGTACTGTCCATTTTGGACAGGTTCAGCATGTCCTTAGCAAA TCCTACCAAGACGCCAGGTACTAAAACGGACCTAAGCGCTGCTAGCAATA GTGACAGCCTACTAGATGCAGCAGCCACGAAGGAGTATCAAGACATGGTA GGGAGTCTCATATTTCTAACTCAGCGTACAAGGTTCGACATCTGCTTCAG CGTCATCCATGCAGCACGGTTCACGAGCGCACTGACCCAACAGCACTTGG TGGCAGTAAAACGCATTCTTCCCTGTTTGCGGGGCTACCCTGATATTCCA ATCACCTACAGTAGAAGCAAACTGGAATTGGCCGGCTACTCTGACGCATC GTACTGCACAAGGTCTACAACGGGCACGATGTTCTTCTTTGCTGACGGAT TGGTGCACTTCTCGTCTCGACTTCAGAAGACCACAGCTACAAGCACAACT GAGGCGGAACTCATCGCACTAGCAGCATGCGCTAAACAGGGTATTTACCT TCTAGAGATCTGCAGTGAACTTGGTCTTCAAATCAACGGCTGTCAAGTCC GTAATGACAACAGAGGTGCCCTCCATCTCGCAGCAAAAAGCAATTACTGC AGCCGCAGCAAACATCTAACCAACAGATTTTCAGCACTTTGTGACTGGAC CAGGTGCAAGCAGCTCATTACCGACCATATATCAAGTTCAGACCAGCTAG CCGAGATCCTCTCTCAGCACTGTGAGAGAGTGACGTTTGCTCGACCATGC AGCAAAATTTCGCCATTTGGAGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14609:3952..5328-

>mRNA_H-paniculata_contig14609.2764.1 ID=mRNA_H-paniculata_contig14609.2764.1|Name=mRNA_H-paniculata_contig14609.2764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2754bp|location=Sequence derived from alignment at H-paniculata_contig14609:3952..5328- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAAAGTGAAAGCAGACGGAAAGTTCAAGATTCGACTCGTGGTACA
AGGCTGGTCGCAAAAACACGGAATAGACTGCGAGAGCACGTTTGCACTAG
TATACAGACTGGAGAGCCAGAGACTGCCGCTCGCGCTTGAAATTGCAAAG
GATTGGACAGCCTATGCACTGGATGTTCAAGTTGCTTTTCTAAACGGCAA
ATTGAAGGAAAGCGTCTTCTGTGAACAGGCACCTGGATTCGAGAAGACGG
ATTCCACTACAGGACAACCCTACGTGATGAGTTTGAAGAGATCAATATAT
GGGTTGCGCCAAAGCCCAAATGTTTGGAACCATACCATCAACAACGAGCT
GAGGAGCATGGACTTTACACCGACGATCTCGGATCCTTGTGTGTACAGTA
AAGGAAGCAACGACACCTACCTTACGCTCAGCCTTTTCGTCGACGACATC
CTAGTTACAGGACCAACAGACAAAGTACTAATGGATGTTCGCAACCAACT
CGTGAACAAGTTCACCATTACGGACCTTGGAGAGGTATCGCTTATTCTTG
GCATGGAGGTACCGCGCAACAAACAAACTGGCACCCATCAGCTATCACAG
CACAAGCACGTACTGTCCATTTTGGACAGGTTCAGCATGTCCTTAGCAAA
TCCTACCAAGACGCCAGGTACTAAAACGGACCTAAGCGCTGCTAGCAATA
GTGACAGCCTACTAGATGCAGCAGCCACGAAGGAGTATCAAGACATGGTA
GGGAGTCTCATATTTCTAACTCAGCGTACAAGGTTCGACATCTGCTTCAG
CGTCATCCATGCAGCACGGTTCACGAGCGCACTGACCCAACAGCACTTGG
TGGCAGTAAAACGCATTCTTCCCTGTTTGCGGGGCTACCCTGATATTCCA
ATCACCTACAGTAGAAGCAAACTGGAATTGGCCGGCTACTCTGACGCATC
GTACTGCACAAGGTCTACAACGGGCACGATGTTCTTCTTTGCTGACGGAT
TGGTGCACTTCTCGTCTCGACTTCAGAAGACCACAGCTACAAGCACAACT
GAGGCGGAACTCATCGCACTAGCAGCATGCGCTAAACAGGGTATTTACCT
TCTAGAGATCTGCAGTGAACTTGGTCTTCAAATCAACGGCTGTCAAGTCC
GTAATGACAACAGAGGTGCCCTCCATCTCGCAGCAAAAAGCAATTACTGC
AGCCGCAGCAAACATCTAACCAACAGATTTTCAGCACTTTGTGACTGGAC
CAGGTGCAAGCAGCTCATTACCGACCATATATCAAGTTCAGACCAGCTAG
CCGAGATCCTCTCTCAGCACTGTGAGAGAGTGACGTTTGCTCGACCATGC
AGCAAAATTTCGCCATTTGGAGAATGAATGTTTAAAGTGAAAGCAGACGG
AAAGTTCAAGATTCGACTCGTGGTACAAGGCTGGTCGCAAAAACACGGAA
TAGACTGCGAGAGCACGTTTGCACTAGTATACAGACTGGAGAGCCAGAGA
CTGCCGCTCGCGCTTGAAATTGCAAAGGATTGGACAGCCTATGCACTGGA
TGTTCAAGTTGCTTTTCTAAACGGCAAATTGAAGGAAAGCGTCTTCTGTG
AACAGGCACCTGGATTCGAGAAGACGGATTCCACTACAGGACAACCCTAC
GTGATGAGTTTGAAGAGATCAATATATGGGTTGCGCCAAAGCCCAAATGT
TTGGAACCATACCATCAACAACGAGCTGAGGAGCATGGACTTTACACCGA
CGATCTCGGATCCTTGTGTGTACAGTAAAGGAAGCAACGACACCTACCTT
ACGCTCAGCCTTTTCGTCGACGACATCCTAGTTACAGGACCAACAGACAA
AGTACTAATGGATGTTCGCAACCAACTCGTGAACAAGTTCACCATTACGG
ACCTTGGAGAGGTATCGCTTATTCTTGGCATGGAGGTACCGCGCAACAAA
CAAACTGGCACCCATCAGCTATCACAGCACAAGCACGTACTGTCCATTTT
GGACAGGTTCAGCATGTCCTTAGCAAATCCTACCAAGACGCCAGGTACTA
AAACGGACCTAAGCGCTGCTAGCAATAGTGACAGCCTACTAGATGCAGCA
GCCACGAAGGAGTATCAAGACATGGTAGGGAGTCTCATATTTCTAACTCA
GCGTACAAGGTTCGACATCTGCTTCAGCGTCATCCATGCAGCACGGTTCA
CGAGCGCACTGACCCAACAGCACTTGGTGGCAGTAAAACGCATTCTTCCC
TGTTTGCGGGGCTACCCTGATATTCCAATCACCTACAGTAGAAGCAAACT
GGAATTGGCCGGCTACTCTGACGCATCGTACTGCACAAGGTCTACAACGG
GCACGATGTTCTTCTTTGCTGACGGATTGGTGCACTTCTCGTCTCGACTT
CAGAAGACCACAGCTACAAGCACAACTGAGGCGGAACTCATCGCACTAGC
AGCATGCGCTAAACAGGGTATTTACCTTCTAGAGATCTGCAGTGAACTTG
GTCTTCAAATCAACGGCTGTCAAGTCCGTAATGACAACAGAGGTGCCCTC
CATCTCGCAGCAAAAAGCAATTACTGCAGCCGCAGCAAACATCTAACCAA
CAGATTTTCAGCACTTTGTGACTGGACCAGGTGCAAGCAGCTCATTACCG
ACCATATATCAAGTTCAGACCAGCTAGCCGAGATCCTCTCTCAGCACTGT
GAGAGAGTGACGTTTGCTCGACCATGCAGCAAAATTTCGCCATTTGGAGA
ATGA
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