mRNA_H-paniculata_contig14604.2762.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14604.2762.1
Unique NamemRNA_H-paniculata_contig14604.2762.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14604.2762.1 vs. uniprot
Match: A0A6H5L435_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L435_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.090e-22
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:    1 AFGDT-LTANWPKLLATLPEQRARELSKKAGVEFKSKANMDANKRISSARTHATVPLRDGQQVGLKDATVAFKKGHIGEREYYEDVLKPSFSDKLPEMLPKILKALPPERASALKAVMR 354
            AFG   L   WPKLL  LP ++AREL++ AG++F++         +S +   AT P    +QVGLKDAT ++K+G +G REYYE+VL   F DKL  MLP ILKALPP+RA AL AV +
Sbjct:  104 AFGKKELAKMWPKLLPRLPPEKARELAEAAGLDFEA---------LSES---ATSPAP--RQVGLKDATASYKRGDMGAREYYENVLLEVFGDKLAGMLPDILKALPPDRAEALAAVAK 208
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BLAST of mRNA_H-paniculata_contig14604.2762.1 vs. uniprot
Match: D8LN74_ECTSI (Similar to past-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN74_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 7.440e-22
Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:    1 AFGDT-LTANWPKLLATLPEQRARELSKKAGVEFKSKANMDANKRISSARTHATVPLRDGQQVGLKDATVAFKKGHIGEREYYEDVLKPSFSDKLPEMLPKILKALPPERASALKAVMR 354
            AFG   L   WPKLL  LP ++AREL++ AG++F++         +S +   AT P    +QVGLKDAT ++K+G +G REYYE+VL+ +F DKL  MLP ILKALPP+RA A+ AV +
Sbjct: 1097 AFGKKELAKMWPKLLPRLPPEKARELAEAAGLDFEA---------VSES---ATSPAP--RQVGLKDATASYKRGEMGAREYYENVLQEAFGDKLAGMLPDILKALPPDRAEAVAAVAK 1201
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14604.2762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L435_9PHAE4.090e-2250.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN74_ECTSI7.440e-2249.58Similar to past-1 n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14604contigH-paniculata_contig14604:663..1518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue7.6e-19
Seed eggNOG ortholog2880.D8LN74
Preferred nameENAH
KEGG rclassRC00049
KEGG koko:K01196,ko:K03099,ko:K05746,ko:K12483
KEGG ReactionR02109,R02111
KEGG Pathwayko00500,ko01100,ko01110,ko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04144,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map00500,map01100,map01110,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04144,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG0998@1,KOG0998@2759,KOG1029@1,KOG1029@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_003780.1
EC2.4.1.25,3.2.1.33
COG Functional cat.U
CAZyGH13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131,ko04147
Exons2
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929162.7752717-CDS-H-paniculata_contig14604:662..8051622929162.7752717-CDS-H-paniculata_contig14604:662..805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14604 663..805 +
1691480755.6507945-CDS-H-paniculata_contig14604:662..8051691480755.6507945-CDS-H-paniculata_contig14604:662..805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14604 663..805 +
1622929162.7883968-CDS-H-paniculata_contig14604:1283..15181622929162.7883968-CDS-H-paniculata_contig14604:1283..1518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14604 1284..1518 +
1691480755.6628885-CDS-H-paniculata_contig14604:1283..15181691480755.6628885-CDS-H-paniculata_contig14604:1283..1518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14604 1284..1518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14604.2762.1prot_H-paniculata_contig14604.2762.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14604 663..1518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14604.2762.1

>prot_H-paniculata_contig14604.2762.1 ID=prot_H-paniculata_contig14604.2762.1|Name=mRNA_H-paniculata_contig14604.2762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
AFGDTLTANWPKLLATLPEQRARELSKKAGVEFKSKANMDANKRISSART
HATVPLRDGQQVGLKDATVAFKKGHIGEREYYEDVLKPSFSDKLPEMLPK
ILKALPPERASALKAVMREKVCTVAK
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mRNA from alignment at H-paniculata_contig14604:663..1518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14604.2762.1 ID=mRNA_H-paniculata_contig14604.2762.1|Name=mRNA_H-paniculata_contig14604.2762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=856bp|location=Sequence derived from alignment at H-paniculata_contig14604:663..1518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTCGGGGACACGCTGACTGCAAATTGGCCTAAGTTACTGGCCACCTT
GCCAGAGCAGAGAGCCCGAGAGTTGTCTAAGAAGGCAGGTGTGGAGTTCA
AGAGCAAGGCGAACATGGACGCCAATAAACGTATCTCATCTGCGTCCCAC
GCCCATGCAACGCTTCCTCCTCGCCAGGCAAGCCTACATGAAATATTTCT
ATCTCTCTCGAAATATCAAAAATGGTTAAGTTTAAAGGTAGCGCCGACAT
TCAGTCCACTATTAGCTACTTGTATATTCCGCGACGGCACATTTTCGCCT
TCAAACAATGTACAGACTCGGATGTGGAGTTTGGCGAACATGACACATCT
ACCATTATAGCTGACTACCCAAGAATATTCGCTGTATCAAGAAATGAATT
TAACAAGCGACGTTCATCCCACTATCCAGTATTCCGCTCCAATATAGAAT
CATATTCCAATAACATGCTAAGATTTCGGGAGGTGCCAGGTGCCAACCAT
ACCATAAGAACGCTGTACCTGATACCTTGTTTGACTCGCATATGTACCAC
ATGACAACCCCACTGCGGTCAAACAAACACACTGTGCGGTGCAAGCAACC
CCTTTGAAAATAACCACGTAGACGCACGCACGCCACGGTACCTTTGCGCG
ACGGGCAACAGGTAGGGCTTAAGGACGCCACCGTGGCGTTCAAGAAGGGA
CATATTGGTGAGAGGGAGTACTATGAGGACGTACTGAAGCCGTCGTTCAG
CGACAAGTTGCCAGAGATGCTGCCCAAAATTCTCAAAGCGCTTCCACCAG
AAAGGGCGTCAGCCTTGAAAGCTGTCATGCGAGAGAAGGTATGTACCGTC
GCCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig14604:663..1518+

>mRNA_H-paniculata_contig14604.2762.1 ID=mRNA_H-paniculata_contig14604.2762.1|Name=mRNA_H-paniculata_contig14604.2762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig14604:663..1518+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTCGGGGACACGCTGACTGCAAATTGGCCTAAGTTACTGGCCACCTT
GCCAGAGCAGAGAGCCCGAGAGTTGTCTAAGAAGGCAGGTGTGGAGTTCA
AGAGCAAGGCGAACATGGACGCCAATAAACGTATCTCATCTGCGCGTTCG
GGGACACGCTGACTGCAAATTGGCCTAAGTTACTGGCCACCTTGCCAGAG
CAGAGAGCCCGAGAGTTGTCTAAGAAGGCAGGTGTGGAGTTCAAGAGCAA
GGCGAACATGGACGCCAATAAACGTATCTCATCTGCACGCACGCACGCCA
CGGTACCTTTGCGCGACGGGCAACAGGTAGGGCTTAAGGACGCCACCGTG
GCGTTCAAGAAGGGACATATTGGTGAGAGGGAGTACTATGAGGACGTACT
GAAGCCGTCGTTCAGCGACAAGTTGCCAGAGATGCTGCCCAAAATTCTCA
AAGCGCTTCCACCAGAAAGGGCGTCAGCCTTGAAAGCTGTCATGCGAGAG
AAGGTATGTACCGTCGCCAAAACGCACGCACGCCACGGTACCTTTGCGCG
ACGGGCAACAGGTAGGGCTTAAGGACGCCACCGTGGCGTTCAAGAAGGGA
CATATTGGTGAGAGGGAGTACTATGAGGACGTACTGAAGCCGTCGTTCAG
CGACAAGTTGCCAGAGATGCTGCCCAAAATTCTCAAAGCGCTTCCACCAG
AAAGGGCGTCAGCCTTGAAAGCTGTCATGCGAGAGAAGGTATGTACCGTC
GCCAAA
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