mRNA_H-paniculata_contig146.2758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig146.2758.1
Unique NamemRNA_H-paniculata_contig146.2758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: D7FN17_ECTSI (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN17_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 5.970e-105
Identity = 150/218 (68.81%), Postives = 187/218 (85.78%), Query Frame = 2 
Query:  116 SSLKNLYLLGYNVACAAGWAYVLITCAQHIVSGKSEQPQALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKKRNAGV 769
            S +K++YL+ YN+ACA+GW+YVL  C  HI++G   +PQALYDEVE+VL+IVQTAA+MEVLHA+LGVVRSPW TTL+QV+SR+ ++WGF+WA+PSTQGQ+G+ LCITSWA VEIPRYLFY F V+ SSP+PLFYLRYSLF VLYPTGI+GE++T+ A LP LK + D +   V GP++VSGY+V LA+LAVYVPG P+MYMNMV NR+SAFKKRNAG 
Sbjct:    3 SPIKDVYLIAYNLACASGWSYVLFACVSHILAGN--EPQALYDEVEKVLQIVQTAALMEVLHAMLGVVRSPWVTTLMQVSSRIILVWGFMWAVPSTQGQLGSMLCITSWACVEIPRYLFYTFGVLKSSPFPLFYLRYSLFAVLYPTGIAGEVMTMLAGLPDLKNAQDTLRLGV-GPISVSGYIVTLALLAVYVPGGPYMYMNMVGNRRSAFKKRNAGA 217
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: A0A835ZGJ3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGJ3_9STRA)

HSP 1 Score: 201 bits (510), Expect = 5.030e-61
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = 2 
Query:  134 YLLGYNVACAAGWAYVLITCAQHIVSGKSEQPQALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKKRNA 763
            YL  YN+ACA GWA+ L+  A+    G S +    ++ +   +  VQT A+ME+LH+L+G+V SPW TTLLQV+SR+ + WGFL++  ++Q      L   SWA VE+PRYLFY FN+MG+ PYPLF+LRYSLF VLYP+GI+GE++T+      LK         + G +++S Y +AL +LA YVPGAPFMY +MV+ R+  FK+R A
Sbjct:    7 YLGAYNLACAGGWAFALVLFAKAQYEGASWRET--WNSMSTTVMAVQTVAVMEILHSLVGLVPSPWMTTLLQVSSRLVVAWGFLYSCEASQDHYAMALTTVSWALVEVPRYLFYVFNIMGNVPYPLFWLRYSLFAVLYPSGITGEIMTIVNGFDCLKALKP---VPLAGGISISMYHMALLVLATYVPGAPFMYSHMVTTRRKQFKRRKA 211
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: A0A6G0XHX3_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHX3_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.360e-54
Identity = 104/215 (48.37%), Postives = 139/215 (64.65%), Query Frame = 2 
Query:  122 LKNLYLLGYNVACAAGWAYVLITCAQHIVSGKSEQPQA--LYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKKRN 760
            +KNLYL  YN+AC AGWAYVL    Q +   ++    A  L+  VE  LKIVQTAAIME+LHA++G+VRSP F+T+LQV+SR+ +LW     +P T+   G  + +TSW+ VE+PRY FYA N+  + P  LF+LRY LF VLYPTGISGE+  + +ALP +      +       V +S   +    L VYVPG+PFMY NM + RK A+ K+N
Sbjct:    2 IKNLYLTLYNLACCAGWAYVLGLTFQTVNQDRNIDVSAAKLWAIVEIPLKIVQTAAIMEILHAMVGIVRSPVFSTVLQVSSRLALLWMINDLVPETRAHWGFVMMVTSWSLVEVPRYAFYALNLWNAVPDWLFFLRYHLFMVLYPTGISGEVSCMLSALPYVTNGAYAIQMPNDHNVAISLQFMIYLTLVVYVPGSPFMYQNMNNMRKKAYAKKN 216
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: A0A7S3HHK7_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHK7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 7.400e-52
Identity = 100/220 (45.45%), Postives = 140/220 (63.64%), Query Frame = 2 
Query:  131 LYLLGYNVACAAGWAYVLITCAQHIVSGKSEQPQALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALP---TLKVSGDRVGFAVVGPVTVSGYMVALAILAV-YVPGAPFMYMNMVSNRKSAFKKRNAGVGDS 778
            +YLL YN+AC AGWAYVL  C +HI   ++E     + EVE  LKIVQTAA++EVLH+++G+V+SPW T  +QV SRV  LW  +    + Q  +   L  TSW  VE+PRYLFYA N++ + PYPLF+LRYSLF VLYPTGI+GEL T++ A     T     D+  F  +       ++V++ ++A+ Y+PG+P M+ +MV  R   F+    G  +S
Sbjct:    8 VYLLAYNLACCAGWAYVLFICVKHI---RAETIADTWSEVELPLKIVQTAAVLEVLHSMVGLVKSPWATAFMQVFSRVWTLWAIMDTTDAAQTTVFFVLACTSWGLVEVPRYLFYALNLLNAVPYPLFWLRYSLFAVLYPTGITGELGTMYHAFNFFITQAPIQDQPLFRQI-------HLVSIVLVAITYIPGSPKMFGHMVKTRSKQFELYKNGGKES 217
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: A0A2D4CGE6_PYTIN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGE6_PYTIN)

HSP 1 Score: 174 bits (442), Expect = 1.290e-50
Identity = 96/219 (43.84%), Postives = 135/219 (61.64%), Query Frame = 2 
Query:  116 SSLKNLYLLGYNVACAAGWAYVLITCAQHIVSGKSEQP------QALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKK 754
            ++L NLYLL YN A AAGWAYVL      +++G+ +        ++ +D VE  LK+VQ+AA ME+LHA LG+VRSP  +T +QV SR+ ++WG     P ++ Q G  L + SW  VE+PRY FYA N+    P  +F+LR  LF VLYP+G+ GE+L + +ALP LK     V       V VS Y V + +L +Y+PG P MY +M++ R  A+ K
Sbjct:    5 NALLNLYLLAYNAASAAGWAYVLFLTVTTVLAGREQGKDWSAISRSTWDTVELPLKVVQSAAFMEILHAALGLVRSPLGSTFMQVGSRLWLVWGINVLCPDSRYQFGFPLMVASWGLVEVPRYTFYALNLFNIVPSFVFFLRXHLFMVLYPSGVGGEVLCMISALPYLKSGAYAVQLPNSLNVAVSLYTVVIMMLIIYIPGLPVMYSHMLTQRNRAYSK 223
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: A0A067CBA8_SAPPC (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBA8_SAPPC)

HSP 1 Score: 167 bits (424), Expect = 5.660e-48
Identity = 93/215 (43.26%), Postives = 131/215 (60.93%), Query Frame = 2 
Query:  122 LKNLYLLGYNVACAAGWAYVLITCAQHIVSGK--SEQPQALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKKRN 760
            +K  YL+ +NVA   GWAYVL    Q + + K  +     L+D + + LKIVQT AIMEV+HAL+G+VRSP  +T +QV+SR+ ++W      P ++   G  L + SW  VE+PRY FYA N++ + P  LF+LRY LF VLYP+G++GE+  +  ALP L      +       + VS Y++ L  L VYVPG P MY +M   RK A+ K+N
Sbjct:    2 IKTTYLVLFNVASCLGWAYVLGQTLQQLYADKDVATTSAGLWDLIGEPLKIVQTMAIMEVVHALIGLVRSPVGSTFMQVSSRLWLVWAINVLCPESRTHWGFVLMVASWGLVEVPRYAFYALNLLDAVPDWLFFLRYHLFMVLYPSGVTGEVTCMLKALPLLSTGAYSITMPNTHNIAVSLYVIVLLTLVVYVPGLPVMYTHMNVQRKRAYAKKN 216
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: A0A8K1FNL1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNL1_PYTOL)

HSP 1 Score: 166 bits (421), Expect = 1.740e-47
Identity = 97/221 (43.89%), Postives = 134/221 (60.63%), Query Frame = 2 
Query:  119 SLKNLYLLGYNVACAAGWAYVLITCAQHIVS----GKSEQP--QALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKKRNA 763
            +L NLYLL YN   AAGWA+VL   A  + +    GK  +   +A ++ VE  LKIVQT A ME++HA LG VRSP  +TL+QV+SR+ ++W      P ++ QIG  L + SW  VE+PRY FYA N+    P  LF+LRY LF VLYP+G++GE+L + +ALP L+     +       V +S Y V L  +  Y+PG P MY +M++ R  A+ K  A
Sbjct:    4 ALLNLYLLAYNAVSAAGWAFVLYLAATTVWASYEQGKDVEAIARATWNAVEWPLKIVQTMAAMEIIHAALGFVRSPLGSTLIQVSSRLWLVWAINELCPISRYQIGFPLMVLSWGLVEVPRYSFYALNLYNLVPSFLFFLRYHLFMVLYPSGVAGEVLCLISALPYLQTGVYAIQMPNAHNVAISLYTVVLMSIVTYIPGLPVMYGHMLTQRNRAYSKTKA 224
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: A0A485KQR1_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQR1_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.190e-47
Identity = 94/215 (43.72%), Postives = 133/215 (61.86%), Query Frame = 2 
Query:  122 LKNLYLLGYNVACAAGWAYVLITCAQHIVSGKS--EQPQALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKKRN 760
            +K  YL+ +N+A   GWAYVL    Q + + +   +  Q L+  VE  LKIVQT A+MEVLHA+LG+VRSP  +T +QV+SR+ +LW      P ++   G  L + SW+ VE+PRY FYA N++ + P  LF+LRY LF VLYP+GI+GE+  +  ALP L      V       V +S Y+V +  L  Y+PG+PFM+ +M   RK A+ K+N
Sbjct:    2 IKTTYLVLFNLASCLGWAYVLGQTFQLVYADQDIEKSSQTLWGVVEGPLKIVQTMALMEVLHAMLGLVRSPVGSTFMQVSSRLFLLWAINVLCPDSRYHWGFILMVASWSLVEVPRYAFYALNLLDAVPDWLFFLRYHLFMVLYPSGITGEVTCMLKALPLLASGAYSVQMPNTHNVAISLYIVVVITLITYIPGSPFMFNHMNIQRKKAYAKKN 216
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: A0A1V9YMC0_9STRA (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMC0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 9.000e-47
Identity = 89/215 (41.40%), Postives = 132/215 (61.40%), Query Frame = 2 
Query:  122 LKNLYLLGYNVACAAGWAYVLITCAQHIVSGKS--EQPQALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKKRN 760
            +K  YL+ +NVA   GWAYVL    Q + + K+       L+D + + LKIVQT A+MEV+HAL+G+VRSP  +T +QV+SR+ ++W      P ++   G  L + SW  VE+PRY FYA N++ + P  LF+LRY LF VLYP+G++GE+  +  +LP L      +       + VS Y++ L I+ +Y+PG P MY +M   RK A+ K+N
Sbjct:    2 IKTAYLVLFNVASCLGWAYVLGQTLQTLYTDKNIAATSAGLWDIIGEPLKIVQTMALMEVIHALVGLVRSPVGSTFMQVSSRLWLVWAINVLCPESRTHWGFVLMVMSWGLVEVPRYAFYALNLLDAVPNWLFFLRYHLFMVLYPSGVTGEVTCMIKSLPLLASGAYSITMPNTHNIAVSLYVIVLIIMVIYIPGLPIMYSHMNVQRKKAYAKKN 216
[Close]
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Match: K3XAL3_GLOUD (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAL3_GLOUD)

HSP 1 Score: 164 bits (415), Expect = 1.390e-46
Identity = 90/219 (41.10%), Postives = 132/219 (60.27%), Query Frame = 2 
Query:  116 SSLKNLYLLGYNVACAAGWAYVLITCAQHIVSGKSEQP------QALYDEVEQVLKIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQIGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGISGELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFMYMNMVSNRKSAFKK 754
            S L NLYLL +N    AGWA++L T    +++ + +        +A +D V   L+IVQT A ME++HA +G VRSP  +TL+QV+SR+ ++WG    IP ++ Q G  L + SW+ VE+PRY FYA N+    P  L +LRY LF VLYP+G+SGE+L + +ALP L      +       + VS Y+V + +L  Y+PG P MY +M++ R   + K
Sbjct:    5 SPLLNLYLLAFNALSGAGWAFILYTTVTTVLAAREQGKDWEHVSRATWDAVGFPLQIVQTMAAMEIVHAAIGFVRSPLGSTLMQVSSRLWLVWGINVLIPDSRYQFGFPLMVLSWSLVEVPRYSFYALNLYNKVPAFLTFLRYHLFMVLYPSGVSGEVLCMVSALPFLSTGAYSIQQPNTHNIAVSLYVVVILVLLTYIPGLPVMYGHMLTQRNRVYSK 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig146.2758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN17_ECTSI5.970e-10568.81Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A835ZGJ3_9STRA5.030e-6148.57Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A6G0XHX3_9STRA1.360e-5448.37Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A7S3HHK7_9STRA7.400e-5245.45Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A2D4CGE6_PYTIN1.290e-5043.84Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A067CBA8_SAPPC5.660e-4843.26Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A8K1FNL1_PYTOL1.740e-4743.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KQR1_9STRA3.190e-4743.72Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
A0A1V9YMC0_9STRA9.000e-4741.40Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]
K3XAL3_GLOUD1.390e-4641.10Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig146contigH-paniculata_contig146:34125..39248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score314.7
Seed ortholog evalue3.5e-83
Seed eggNOG ortholog2880.D7FN17
KEGG rclassRC00770,RC01095
KEGG koko:K10703
KEGG ReactionR07760,R10827
KEGG Pathwayko00062,ko01040,ko01110,ko01212,map00062,map01040,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.3-hydroxy-lignoceroyl-CoA dehydratase activity
EggNOG OGsCOG5198@1,KOG3187@2759
Ec32 ortholog descriptionPutative tyrosine phosphatase
Ec32 orthologEc-25_001190.1
EC4.2.1.134
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons4
Model size793
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig146.2758.1prot_H-paniculata_contig146.2758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig146 34125..39136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929161.8216057-CDS-H-paniculata_contig146:34124..342841622929161.8216057-CDS-H-paniculata_contig146:34124..34284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 34125..34284 -
1691480755.1362813-CDS-H-paniculata_contig146:34124..342841691480755.1362813-CDS-H-paniculata_contig146:34124..34284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 34125..34284 -
1622929161.8359962-CDS-H-paniculata_contig146:35763..359341622929161.8359962-CDS-H-paniculata_contig146:35763..35934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 35764..35934 -
1691480755.1506083-CDS-H-paniculata_contig146:35763..359341691480755.1506083-CDS-H-paniculata_contig146:35763..35934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 35764..35934 -
1622929161.8526506-CDS-H-paniculata_contig146:36578..367481622929161.8526506-CDS-H-paniculata_contig146:36578..36748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 36579..36748 -
1691480755.159964-CDS-H-paniculata_contig146:36578..367481691480755.159964-CDS-H-paniculata_contig146:36578..36748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 36579..36748 -
1622929161.8667066-CDS-H-paniculata_contig146:38956..391361622929161.8667066-CDS-H-paniculata_contig146:38956..39136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 38957..39136 -
1691480755.1773028-CDS-H-paniculata_contig146:38956..391361691480755.1773028-CDS-H-paniculata_contig146:38956..39136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 38957..39136 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929161.8803146-UTR-H-paniculata_contig146:39136..392481622929161.8803146-UTR-H-paniculata_contig146:39136..39248Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig146 39137..39248 -
1691480755.191491-UTR-H-paniculata_contig146:39136..392481691480755.191491-UTR-H-paniculata_contig146:39136..39248Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig146 39137..39248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig146.2758.1

>prot_H-paniculata_contig146.2758.1 ID=prot_H-paniculata_contig146.2758.1|Name=mRNA_H-paniculata_contig146.2758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MSSLKNLYLLGYNVACAAGWAYVLITCAQHIVSGKSEQPQALYDEVEQVL
KIVQTAAIMEVLHALLGVVRSPWFTTLLQVASRVTILWGFLWAIPSTQGQ
IGATLCITSWAAVEIPRYLFYAFNVMGSSPYPLFYLRYSLFFVLYPTGIS
GELLTVWAALPTLKVSGDRVGFAVVGPVTVSGYMVALAILAVYVPGAPFM
YMNMVSNRKSAFKKRNAGVGDSKKTA*
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mRNA from alignment at H-paniculata_contig146:34125..39248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig146.2758.1 ID=mRNA_H-paniculata_contig146.2758.1|Name=mRNA_H-paniculata_contig146.2758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5124bp|location=Sequence derived from alignment at H-paniculata_contig146:34125..39248- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCATCATCGCCTGTCGCTGTGGTGCATCGACAAGAGATCAGCTCGTTGCC
AACGAGATAAAAATAAGCCACACGCCTCTACGTTTCTTGTTTATAGTAGG
AACGAATAAGAGATGTCTTCCCTGAAAAACTTGTATCTGCTAGGGTACAA
TGTTGCGTGTGCAGCTGGGTGGGCGTATGTGCTGATCACGTGCGCACAGC
ACATCGTTTCGGGCAAGAGCGAGCAGCCACAAGCTCTCTATGACGAGGTG
GAGCAGGTGCTGAAGATCGTGCAGACGGCGGCAATCATGGAGGTGACTAA
TTTAGCGTGTCTTGCATTCGAGAACGATGTGACTTTGCCTCTGTCTCGAC
GGAGCAGTGTCAATTTGCGCGGCATGTGGTTTGAGGCAAATCTGATCGTT
CGCATGGCGTTACACTGTTTGAGTACATGGAGTGCAGAGGATACAGACGG
CACTGTGATAGTGTCCTAGATTTAGCCATTTTAGCCCCGACTGTTCAGCG
ACAACGAATACATCTCACAACCAATGCCAAGGGATGCTATTGTTGTGCAA
GAATCATGCAAGGCTATCTGTCTGTGCTGTACTCGCTGCTTGTACTGAGC
TGACTGTCTGAACGTCGGTGGCTCCCCCTCCCCGCAACAATTTTCCGGAC
ATCGATTCTCCCTGTTTTTAAATGTGGATTGGATGGGAACTAGGTTCGAA
CGGTCGCTAAGAGCGCTGAAACGATATTTTAGAACAACCAATGAAGCTGA
CAGTCCCACCGTGAAGACGGGGGATTGGCTGCTTAGTGCTGGGGCACCAC
CAAGAAATTTATGCCAAGGCACGGATTCTCACCAATCACGAAGACCTGTA
CCAACGGGATTCCCGACTGGGGTCCATGTCGGAGAGTCGAGGGTTTGTGT
TCCGATCGAATCTCAGAGCCTCAAAATGAATTGAAGGCATTTCCGAATCG
ACTGCACAAAGGTGACGGTAGATAAACTTGTTTTGGGGGGTGGACTCGCG
TAGGATGGTATCAACCTGCCACAACTTGGTGTCTTCTGTGAAAGTAGTAG
CGCTGAATTGATGGGACACGACCCACCTCTACTTCGGCGACACAGATTGT
AGCCGTTAGTCCTGTGGTCGCTGGTGTCGGTCATAAGAAAACACTCCCAA
AACTTCAGCACCTCTGAGAAATATACGGTGCCCTAAACCTCCCAAGATTG
CGGCACAATCCCAAGCCGGCTCCATGGTGATTGAGGTCGTCATGTGCTCC
GCGTGTCCATGGTGTGCCGCTGTCCCGGTCGTAGTTGAAGGTAGGCGCAT
CCGTCACTACGTCGACAAGGGCACCGAGGAACTTGGCAATGTTACCTTAT
GCGCAAGGATAAGAGATGATCGATGGTCATGTCCAATCCGTAATCAACAT
TGAGGACGCCTTTGACTTCGGATGTGATACCACGGCCCCACTCTTGGATG
CCCATGTCGGCCTATTGAACGCTGCCCGCATTCCCTTCGACAACGCCCAG
GACAAGGAAACTCTATGGACTCACGTCGGAGAACATCATAACCAAGATTA
CCAGGGAGACAGAGGTCCCAGAGGCTCTGAGTCTCTGAACGATCTTTCCA
AGACCACAACAAATTTTGCTCGCGTGCTCTGTTCAATTATCGAAATCTCA
TCCCCAGCGATCTTTTGCCACTGATGGTAAAGAGAGGGGGTCGCGTACAC
GATGGAATGAGGAAATTCATCAGAATAAGGGCTTAATCCTTGGGCGTGTA
GCTCCACGACCTTATGTGCTCAACGACATAGAGTGCGCGCATGGTTTTCA
TTGATGGTCGATGCCTCATGTGGACGTGGTTCGTTTGATTAATGCTTGGT
GCGCGACTTTGTGTGGCACATACACCGCTACACAGCCATCAATTGCTGTC
AGCGTTTGGTTTGTACGTTGCATTCCTATCTAGCGTTGGAGTCGCGGTGC
GCAAGACAACGCCAAATCCTGTCGTTGCTGTCCACAGTTTAGTGTCTGCC
GGTTCTGATCAGTGGCAGCTTCCTACCCCCCTTGTCATGAAATAGGCGCT
ATTTAGAACAAAAAGGTCTATTTTTCACTAGGGATCTAGGTGAAGACTGG
ACGGGGGCCTGGACCCAAACGGCTGATTGCAGGGGAGCGCTCCCCCATAC
AACTTTAGATATGAATACGTCAAGAGTGGGCATTTTTCGCGTGAGCAATG
GATACCGGAATCAGCCTGTACAGAGTTATCAAGACGCTTTGCACGTAATT
CGTCATAAGATTGGGTGCTCGATCATCAAGACCGTTTGGGGCTGAAATTG
GTAATGACGAGACGAAAGATCTGTTGCCGTATGTACAGTGAATCGTGTAA
AAACTCCCATTTTTTTGTAGAAACACATGGACGCGGTGCACGCTTTGCCC
AGGCCGAAAACCGAGCCGTTGATCATTCATCTTATTGTACCATACTCGGT
TCTGGGTTTTCCAATGGAACAGCTGCCACACCACCTTGTACTGTTGCCAG
GTTCTCCACGCCTTGCTCGGGGTAGTGCGATCGCCTTGGTTCACTACGCT
ACTCCAGGTGGCATCTAGGGTCACAATTCTGTGGGGATTTCTATGGGCTA
TCCCGAGCACCCAGGGGCAAATCGGAGCAACGCTGTGCATCACCAGCTGG
GCAGCCGTCGAGATCCCGAGGTGATTAATGGTGCAGATGTTTTCCTATTC
CTGGCTTAAGGGGATATTTCCCTGATGCGGGGGAATGGCAATGCATATCA
TCGACGTACCGCCCTTGGTTGCTGAATCAGCGGAGTCAGAAATATGCACC
AGACCGGAGTCAGCTCGGAACGATTGTGGAAGTGACCCTTGAAATGTCGG
GGCTGAGCTTTATGGATTGTACCAACCTCCAAATGTCGAAAATTGACAGC
TGGGCCTCAGCATCGCAACACCGTTTGTTGAAGAATAACAAACTTCAATC
AGCAGTGTTCCGTATGGATCCCCCCATAACAGAATGAGTTATAAGAAACC
CAGGCTGAACGTTTCTTCTTTTTCAGAAATGTGCCAGGCTGGGAAGTTCG
GCCTACTGTTGATAATAATCCGAGTAGTTTGGCTTCCGGATGCCCACTCC
CGTCGGCGAGAAGAGATCCAGACTGAACTCGAAACTCTTGTCACTTGTCA
GAGGGCCTGCTGCTGTCCCATCCGCCGAAACTAGATTGTGCCCGATACAA
TTCGCCCCTCTGCCCATCTCTCAAGCACGCTGACGTCCAGTCAGTCCCAA
CTGTCCAGTCATGTACGTAGTGCATGTAATGATCCAACTCCATCTCGCGC
CCCACATTCCCCAGGTACCTGTTTTACGCGTTCAACGTCATGGGGAGCTC
CCCGTACCCCCTGTTTTACCTTCGGTACTCCCTCTTTTTCGTACTGTACC
CCACGGGCATCTCGGGCGAGCTCCTGACCGTTTGGGCTGCCCTGCCGACA
CTGAAGGTGAGTGGTGACAGAGTGGGCTTTGCGGTGTAGTACTGTTCGGT
GGTGTCGAGAATGTCACGTGAGAACATCATCACAAAATATTGGTATGAAG
GTTTGCGGATTTCCGCATCTGTGTGAACATCTCTCAGAGTATGGGGTGCT
TTCTTTTTTATTTCTACCCCAGACACATGAAAAAAAATCTGTATCAGCAG
CATCGAGAGGGAAAAAGCTTAAGCCCACAACACTTTTTACCATGTTCCGA
TTCCAGACCCATGCAGAACGCATGGAGTATTGTCTTGTCGGAGGATGGGG
TGCTTGTACTGAGCAGCGGCTTATAGCTCATGTATCTTGGCTTCCAACTA
CTTCACGCTCCTCCTCTGCCTACGACATACCGTCGTTGCATATGAGGGTG
GTGGGTGGGGTACGGCAGCAAGAGTGATACACTACCACCCCAAAATGGCT
CAACTACTGATGAACGTCACCACTCGACAATTGCGTGGTCCTCTGGCTCC
ACTAGCTCCCTTCCGTCAAAGACATAGATACAGGCAATATCTCACTGTGT
TCACTGCAAACCTCACTACGATGGTGCCAAACTGTGGGATTTCCCAACAA
AGCTGCATCGTAGGTGCTGCTGCTTGGGTGTCGATTTCGAATGGTTTGTC
CATCATGTCCACCATAAATTATGAACCTCTGTTCCTATGGATCGCAGCTC
TTGTGTGCCAAATGAAACACGTCAGGAAATATGCATAAACAGTAGACAAT
TGCACACATGACTTTCCTTCAGACCATTTGTTATATTGGCCCTATGGTTG
CACCGCAGTCCCATACTACACTGCCCATAGGCGAAGATAGGTTCCATCCC
TTCCAACACCCAACCCAGATGCGTAAGCTTCAATGAAGGGAAGAGCCACA
ATTCGACCCCAATGTGTCAAACAGCCCACTGCCGCACAAATGTTTGTTGC
GGATAGGACTTGCGGTTTCTTTCGCGACGAGCCTTCCCGTTAGCTTGGTG
AAGATGCTGAGCATTCTTCCATTCACGGTTTCTGCATCTATTCTACACTA
ATTTTGCATGTCTGCCTCTACTTTTGACGTGCTTTTTAATCTGTGGTACT
TTCTCCAAACCGTAATCTCATAGTGTACATGCCGTCCGGCTGTCGAAGCG
ATCCTGGTATGTGTTCGTGAGCCTGAGATGCGAATCACACATACTCTTCA
TGGTAATAAATCCGGTACCTTGGATACTCTAGTATGATGTTGTCAGGCGT
GAAAAGCGCGCTGTCAGTTTTTTCACAACACTACACCTTGCGGTGGCGAC
TGTGACAATCATTTTCCTCGGGTACTTTCACCATTTTTTCCAGTTCGTTG
GACTGGCTCCAGCCGTTGCACGGCACCCGGTTCAAAAATGAGACGTCTTC
TAACTGGATTCGACTGTCGCCTCCTACCTAACCCTTGGTCTCGACCTATC
TTTGCGTATTCCTCCTCCCCCCTCCCTCTTCCCCCCCTCAGGATTCGAGC
GCCATTAGCCTTAGCGTTGGTCCGGTGACCGTCTCAGGCTACATGGTAGC
CTTGGCCATCCTGGCTGTTTATGTGCCGGGTGCGCCGTTCATGTACATGA
ACATGGTTTCGAATAGAAAGTCTGCCTTCAAGAAGCGCAACGCGGGGGTC
GGCGATTCGAAGAAAACTGCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig146:34125..39248-

>mRNA_H-paniculata_contig146.2758.1 ID=mRNA_H-paniculata_contig146.2758.1|Name=mRNA_H-paniculata_contig146.2758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig146:34125..39248- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCCCTGAAAAACTTGTATCTGCTAGGGTACAATGTTGCGTGTGC
AGCTGGGTGGGCGTATGTGCTGATCACGTGCGCACAGCACATCGTTTCGG
GCAAGAGCGAGCAGCCACAAGCTCTCTATGACGAGGTGGAGCAGGTGCTG
AAGATCGTGCAGACGGCGGCAATCATGGAGATGTCTTCCCTGAAAAACTT
GTATCTGCTAGGGTACAATGTTGCGTGTGCAGCTGGGTGGGCGTATGTGC
TGATCACGTGCGCACAGCACATCGTTTCGGGCAAGAGCGAGCAGCCACAA
GCTCTCTATGACGAGGTGGAGCAGGTGCTGAAGATCGTGCAGACGGCGGC
AATCATGGAGGTTCTCCACGCCTTGCTCGGGGTAGTGCGATCGCCTTGGT
TCACTACGCTACTCCAGGTGGCATCTAGGGTCACAATTCTGTGGGGATTT
CTATGGGCTATCCCGAGCACCCAGGGGCAAATCGGAGCAACGCTGTGCAT
CACCAGCTGGGCAGCCGTCGAGATCCCGAGGTTCTCCACGCCTTGCTCGG
GGTAGTGCGATCGCCTTGGTTCACTACGCTACTCCAGGTGGCATCTAGGG
TCACAATTCTGTGGGGATTTCTATGGGCTATCCCGAGCACCCAGGGGCAA
ATCGGAGCAACGCTGTGCATCACCAGCTGGGCAGCCGTCGAGATCCCGAG
GTACCTGTTTTACGCGTTCAACGTCATGGGGAGCTCCCCGTACCCCCTGT
TTTACCTTCGGTACTCCCTCTTTTTCGTACTGTACCCCACGGGCATCTCG
GGCGAGCTCCTGACCGTTTGGGCTGCCCTGCCGACACTGAAGGTGAGTGG
TGACAGAGTGGGCTTTGCGGTGTACCTGTTTTACGCGTTCAACGTCATGG
GGAGCTCCCCGTACCCCCTGTTTTACCTTCGGTACTCCCTCTTTTTCGTA
CTGTACCCCACGGGCATCTCGGGCGAGCTCCTGACCGTTTGGGCTGCCCT
GCCGACACTGAAGGTGAGTGGTGACAGAGTGGGCTTTGCGGTCGTTGGTC
CGGTGACCGTCTCAGGCTACATGGTAGCCTTGGCCATCCTGGCTGTTTAT
GTGCCGGGTGCGCCGTTCATGTACATGAACATGGTTTCGAATAGAAAGTC
TGCCTTCAAGAAGCGCAACGCGGGGGTCGGCGATTCGAAGAAAACTGCTT
GACGTTGGTCCGGTGACCGTCTCAGGCTACATGGTAGCCTTGGCCATCCT
GGCTGTTTATGTGCCGGGTGCGCCGTTCATGTACATGAACATGGTTTCGA
ATAGAAAGTCTGCCTTCAAGAAGCGCAACGCGGGGGTCGGCGATTCGAAG
AAAACTGCTTGA
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