mRNA_H-paniculata_contig146.2756.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig146.2756.1
Unique NamemRNA_H-paniculata_contig146.2756.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A6H5L4C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.140e-36
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLNNVRGPHVHRFKSVSVPQGTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
            V AVKFSKDG+RL++ GGDKMLVLN+VRGPHVHR ++V V QGTI+GLDVDPTNKY+VTAGQDKRLNIWS  +G+HVR YK
Sbjct:  322 VGAVKFSKDGKRLITAGGDKMLVLNSVRGPHVHRLRAVKVTQGTIYGLDVDPTNKYIVTAGQDKRLNIWSTISGKHVRAYK 402
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: D7FN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN20_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.150e-36
Identity = 61/81 (75.31%), Postives = 74/81 (91.36%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLNNVRGPHVHRFKSVSVPQGTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
            V+AVKFSKDG+RL++ GGDK LVLN+VRGPHVHR ++V VPQGTI+GLDVDPTNKY++TAGQDKRLNIWS  +G+HVR Y+
Sbjct:  937 VSAVKFSKDGKRLITAGGDKTLVLNSVRGPHVHRLRAVKVPQGTIYGLDVDPTNKYIITAGQDKRLNIWSTISGKHVRAYQ 1017
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A2R5GFS1_9STRA (WD repeat-containing protein 62 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFS1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.520e-21
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLN--NVRGPHVHRFKSVSVPQGTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
            VTAV+FS DG+RL+STGGDK +VL+   + G +  R KSV+VP GTI  +DVD +NKY  T+GQDK++NIWS++ G+ +R YK
Sbjct:  563 VTAVRFSVDGERLLSTGGDKTIVLSVLGLDGRYA-RQKSVNVPYGTIHDVDVDASNKYFCTSGQDKKINIWSLSNGKSIRSYK 644
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A812XMV7_SYMMI (Mapkbp1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XMV7_SYMMI)

HSP 1 Score: 92.0 bits (227), Expect = 4.350e-20
Identity = 41/82 (50.00%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLNNVRGPHVHRFKSVSVPQGTIFGLDVDP-TNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
            VT  KF+ DG RLVS GGDK++VLN+V+G  V R +S+  P GTI G+ +D  T+K+ ++AGQDKR+N+W++ +G+ +R Y+
Sbjct:  332 VTVTKFNADGSRLVSCGGDKIMVLNSVKGREVTRVRSIQTPHGTINGIALDTATSKFAISAGQDKRVNVWNMNSGKLMRTYR 413
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A835ZC14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC14_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.020e-19
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   16 FSKDGQRLVSTGGDKMLVLNNVRGPHVHRFKSVS-VPQGTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
             S DG+               VRG  V R+K+++ VPQGT +GLDVDPT+KYMVTAGQDK+LNIWSI +GRHVR Y+
Sbjct:  978 LSHDGRXXXXXXXXXXXXXXXVRGRQVSRYKTIAAVPQGTTYGLDVDPTDKYMVTAGQDKKLNIWSIVSGRHVRAYR 1054
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A7S1CEL4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEL4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.920e-18
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLNNVR-------GPHVHRFKSVSVPQGTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGY 240
            VTAV FS D  RL+S  GDK LV N V        G  V R K+ + P GTI+ + VD TN+ +VTAGQDKRLNIW++A+ + VR Y
Sbjct:  609 VTAVLFSNDDSRLLSCAGDKTLVFNRVNLDGDAAAGELVTRIKAATAPNGTIYDMHVDSTNRSLVTAGQDKRLNIWNMASCKPVRSY 695
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A507EDE9_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EDE9_9FUNG)

HSP 1 Score: 83.6 bits (205), Expect = 6.040e-17
Identity = 36/81 (44.44%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLNNVRGPHVHRFKSVSVPQGTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
            +T+++F++ G+RL+S G DK LV     G H ++    ++ + TI+ +D+DPT+KY+ TA QD+R+NI+S+ATG+ VR YK
Sbjct:  596 ITSIRFAEKGKRLISCGADKSLVFRQADG-HGYQSYHNAIGKSTIYDMDIDPTSKYLATASQDRRVNIFSVATGKPVRSYK 675
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A2P6NS99_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NS99_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 1.650e-14
Identity = 34/83 (40.96%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLNNVR-GPHVHRFKSVS-VPQGTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
            +T+++F+  G +L+S G D+ ++   V+  P   +    S V  GT+F +D+DPTN+++VTAGQ+K+LN+++IATG+  R YK
Sbjct:  580 ITSIQFANQGTKLLSCGADRSILFREVQTNPIGFKLAHTSMVHYGTVFDMDIDPTNRFVVTAGQEKKLNVYTIATGKSSRSYK 662
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A1Y1HUQ0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUQ0_KLENI)

HSP 1 Score: 74.3 bits (181), Expect = 1.080e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLNNVRGPHVHRFKSVSVPQ-----GTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
            +TAV+F+ DG RL+S   DK +V  ++  P     KS+   Q     G+++ LDVDP +K +VTAGQ+KRL ++S+ATG+ VR ++
Sbjct:  531 ITAVRFASDGSRLLSCSADKSIVFRSL-SPGASGVKSIRYHQEVASRGSLYDLDVDPGDKLVVTAGQEKRLTLYSLATGKPVRSFR 615
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BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Match: A0A2R6WBU6_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WBU6_MARPO)

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-13
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 VTAVKFSKDGQRLVSTGGDKMLVLNNV----RGPHVHRFKSVSVPQGTIFGLDVDPTNKYMVTAGQDKRLNIWSIATGRHVRGYK 243
            +TAVKF  +G +L+S   DK +V  NV     G    R+     P+GTI+ LDVD + K++VT GQDK++N+ ++A+G+ VR +K
Sbjct:  585 ITAVKFRCNGSKLLSCSADKSVVFRNVVSSPTGCKSVRYHQEVAPRGTIYDLDVDTSEKFVVTVGQDKKINVLNLASGKPVRCFK 669
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig146.2756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4C9_9PHAE1.140e-3677.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN20_ECTSI1.150e-3675.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GFS1_9STRA1.520e-2156.63WD repeat-containing protein 62 n=1 Tax=Hondaea fe... [more]
A0A812XMV7_SYMMI4.350e-2050.00Mapkbp1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A835ZC14_9STRA3.020e-1955.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1CEL4_9STRA4.920e-1851.72Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A507EDE9_9FUNG6.040e-1744.44Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A2P6NS99_9EUKA1.650e-1440.96Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1Y1HUQ0_KLENI1.080e-1343.02Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A2R6WBU6_MARPO2.000e-1342.35Uncharacterized protein n=1 Tax=Marchantia polymor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig146contigH-paniculata_contig146:16781..18951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue2.1e-30
Seed eggNOG ortholog2880.D7FN20
Preferred nameWDR90
KEGG koko:K14962,ko:K21763
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitogen-activated protein
EggNOG OGsKOG1408@1,KOG1408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036
Exons4
Model size243
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig146.2756.1prot_H-paniculata_contig146.2756.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig146 16781..18951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929161.4363675-CDS-H-paniculata_contig146:16780..168371622929161.4363675-CDS-H-paniculata_contig146:16780..16837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 16781..16837 -
1691480754.923303-CDS-H-paniculata_contig146:16780..168371691480754.923303-CDS-H-paniculata_contig146:16780..16837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 16781..16837 -
1622929161.4526849-CDS-H-paniculata_contig146:17698..177831622929161.4526849-CDS-H-paniculata_contig146:17698..17783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 17699..17783 -
1691480754.934371-CDS-H-paniculata_contig146:17698..177831691480754.934371-CDS-H-paniculata_contig146:17698..17783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 17699..17783 -
1622929161.4698737-CDS-H-paniculata_contig146:18401..184671622929161.4698737-CDS-H-paniculata_contig146:18401..18467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 18402..18467 -
1691480754.9555292-CDS-H-paniculata_contig146:18401..184671691480754.9555292-CDS-H-paniculata_contig146:18401..18467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 18402..18467 -
1622929161.4815931-CDS-H-paniculata_contig146:18916..189511622929161.4815931-CDS-H-paniculata_contig146:18916..18951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 18917..18951 -
1691480754.9689581-CDS-H-paniculata_contig146:18916..189511691480754.9689581-CDS-H-paniculata_contig146:18916..18951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig146 18917..18951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig146.2756.1

>prot_H-paniculata_contig146.2756.1 ID=prot_H-paniculata_contig146.2756.1|Name=mRNA_H-paniculata_contig146.2756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
VTAVKFSKDGQRLVSTGGDKMLVLNNVRGPHVHRFKSVSVPQGTIFGLDV
DPTNKYMVTAGQDKRLNIWSIATGRHVRGYK
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mRNA from alignment at H-paniculata_contig146:16781..18951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig146.2756.1 ID=mRNA_H-paniculata_contig146.2756.1|Name=mRNA_H-paniculata_contig146.2756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2171bp|location=Sequence derived from alignment at H-paniculata_contig146:16781..18951- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCGCGGTCAAGTTCTCCAAGGATGGACAGAGGTGTGAGCTTTTGCA
AGTATTGCTGAGGGAGGCATAGAGGCAATGGCTGCCGGTACATTCTATAT
AAAAGGGGTTGGAGGGGCGGAAGCGGGGGCCCTCGGATGAAGGGTATGGG
CGTAGCAAGTAAAATGCTATAGTTCACGTAGGCGCAGACTAAGTGTGACC
GTTGTGGCTCGGCGGTACTTTGGTGACCTTCAGAGATGACCCGGTGGGAT
AGGACACTCTCAGGGAGTCGAGCCTGGACTCGGTTCTCTTTTTTTTCGCG
TGGTGAGAAAAGAGTTGTTGCTGGCTTCAGGAATTCTTCCTGCATCATGC
GAGCAATAGTGGTTTCTGCTGGGTGTGCGGGGCACTGTATTTGTGCACCC
CCGTCCGGTGGAGTGCAATGACACGCGTTGACGTTGTTGTCGCCGTTTTG
ACTCCTTGGTTTGTGACCTGGAACTGCTATGCAGGCTTGTATCGACCGGT
GGTGACAAGATGTTGGTGCTGAATAACGTCAGGGGCCCCCACGTGCACAG
GTGATGGTAACGGGCAGGTATTCTCAAACTCTACATACCTTTGCTGTTAA
TACCAATGACCATGAGTCCTCACGAGGACTGGGGCATGTCTGCCGCACGG
AGTCAACGATGAGAGGTATATTTGATTTCGTTGTTGACTTTCACGTTTGC
AACGCCTGGCTGTAGGTGGCTTTTTTTGGCTTGGGGGTGTATGGCAGGGA
AGTCAAGAGCACTGTGAGGTTTCGCAGCATTCCTCGAGTAGGTTTTTGCC
ATACATCACACGCAGTCTGGTGTTACGTGTGTGTCTTGAACGTCTAATTT
TTCGTATTTGCTGCGAAAATATATCGAAAGCCACAGTAGTGCAAAACTTG
TCTTTCAACAGCGAAAATATTTTTGTTGTTGTTGTTGTTGTTCACACTCC
TGAGTGTAAGAAGAAACAAGATGAGTAGCACCCCCATCCCCCATAAAACA
TGCTCAATGTGGTGAGTGTTGAAACAGGTAATTATTCACCTGTTGAGCAA
TTCATTACATACTCTCTGTAACAAGACAAGACGATCGACTTCATTTTCAG
CTTCCAATGTGATGAACGTACACCATTAGGAATCATGCGTTGAATGGGTC
TGTTTTCTTGTTCCACAGGTTCAAGTCGGTGAGCGTTCCGCAGGGCACTA
TTTTCGGACTCGACGTGGACCCCACCAATAAGTACATGGTCACCGCCGGC
CAGGTGCTTTTGTTTTTCAGGTCGTTGTTGGCGCGGCGAACAGCCTTTTT
TTAAGAAATGCTCTGCGTCTCCCTTTTTTTTCTCTAAAAGAATAAGTATG
GGTAGTAAGGGCTTTCCCCATGCATGTCCTGCATACATGATTTTCTCTGC
ATCGAGTTCTCGGTTCGTTCTGAACTCCGGAAGTTTCGACGTTAGTGATT
CTTCCTACGTTTGGATCACGTTTGCAGATCTAAGTTACAATATAGGCTAC
CTCCCTGTTTGTATTGTTTGCAACGACGAATTTCACCCCTGCGGGTAGTT
AGGGCGTTTTCAACGCTATGCCTCTTCGACGGTTTGCTTTGTGTCTGACA
CCAGCGGGACTACTGAGTTAGTGCACAAAAAAATCACGGACAGGTACACT
TTCCAATAAAGTAATTCTCAAGGTGTTCCGAGAGGGACCATCACACCAGC
ATCACAGCCGCTATATCCCAATTACTCAAGTGTGACAATTTTGAAGGCGC
ATTAATGAGTGCGTTGTGATACATCTACCGGGGAAAGTACCTCATAAAGG
GCAGCGTTCCCAAGTTTCCAGCTATTGCAGCTGGTTCAGTCCAACTACCG
ACCGATTCGAATCTCCATTAGATTTAGGGATACTGCGCCGAGGCGTTTCC
TTCTGCAAATGCCTGGCCCTACTAATGCCATCCTCGGGGGTGCACATCTT
TTGGGTTACGTATATACTCTGGTCCTGGAACTAGATAAAGAAGCCACAGG
TGGACTCGATGCATCGAAGACAATCCGAAGACCCGAAGACGTCAGCCCGC
ATCAAACGTGATTGCCTCATTACCCAGGCTGCCACCTTTTGCATCACGCT
ATATTGCAAAGCAGGACAAGCGGCTCAACATATGGAGCATTGCCACCGGC
AGGCATGTACGGGGCTACAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig146:16781..18951-

>mRNA_H-paniculata_contig146.2756.1 ID=mRNA_H-paniculata_contig146.2756.1|Name=mRNA_H-paniculata_contig146.2756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig146:16781..18951- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCGCGGTCAAGTTCTCCAAGGATGGACAGAGGTGACCGCGGTCAAG
TTCTCCAAGGATGGACAGAGGCTTGTATCGACCGGTGGTGACAAGATGTT
GGTGCTGAATAACGTCAGGGGCCCCCACGTGCACAGGCTTGTATCGACCG
GTGGTGACAAGATGTTGGTGCTGAATAACGTCAGGGGCCCCCACGTGCAC
AGGTTCAAGTCGGTGAGCGTTCCGCAGGGCACTATTTTCGGACTCGACGT
GGACCCCACCAATAAGTACATGGTCACCGCCGGCCAGGTTCAAGTCGGTG
AGCGTTCCGCAGGGCACTATTTTCGGACTCGACGTGGACCCCACCAATAA
GTACATGGTCACCGCCGGCCAGGACAAGCGGCTCAACATATGGAGCATTG
CCACCGGCAGGCATGTACGGGGCTACAAAGACAAGCGGCTCAACATATGG
AGCATTGCCACCGGCAGGCATGTACGGGGCTACAAA
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