mRNA_H-paniculata_contig1459.2750.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1459.2750.1
Unique NamemRNA_H-paniculata_contig1459.2750.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A6H5JYU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU7_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 2.050e-75
Identity = 152/292 (52.05%), Postives = 171/292 (58.56%), Query Frame = 1 
Query:  457 MRRSSSMRSEPTSNTQTDRFLGALVVVCASAVIGAVGAHAGSTLSSLFRFAGGGGGRFGDKHRATXXXXXXXXKLRRGRACAPPFPNAVDSDXXXXXXXXXXXXXXDAYHVYAHGARSVGSGDDEWRAAGRGARERRGDGGDVGRSXXXXXXXSVLHVGSCHCGGLMFEVDAPAHLVAIEGPSKVRYPFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCIRPETIKSLAVGFMKGGGAEVPGMGDPVQGVYEVNK 1332
            MR ++ +   P +    DR LG LV  CASA++ A+GA AG             G  F    R          K R  R                       XXX DAY  YAHG+RS              A  R       GR         VLH GSCHCGGL FEV+AP HL AIEGPSKVRYPFITVPA+QFRLTSDD+NGSLYLL+ RPPAG D TPKVSAHFFCRRCGVH+VHAPDFPHAAVADVNVHCI P TIKSLAV F + GG E+PG+GDPV+G+YE  +
Sbjct:    1 MRAAAPVGGSPKT---VDRVLGVLVAACASALLVALGARAGXXX----------GASFTTLLRLAYQGSSTSSKRRSSRXXX--------------------XXXGDAYFEYAHGSRST-------------AAARXXXXXXAGRGGL------VLHAGSCHCGGLAFEVEAPEHLAAIEGPSKVRYPFITVPAEQFRLTSDDTNGSLYLLQYRPPAGSDDTPKVSAHFFCRRCGVHIVHAPDFPHAAVADVNVHCIHPATIKSLAVAFPRRGGGELPGIGDPVEGMYEARR 240
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A835Z3S2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.230e-31
Identity = 71/156 (45.51%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:  919 VLHVGSCHCGGLMFEVDAPAHLVAIEGPSKVRYPFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTTPK-------------------------VSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCIRPETIKSLAVGFMKGGGAEVPGMGDPVQ 1311
            V+H GSCHCG + FEV AP HL A+EG SK+RYPFI VPA +F+LTSD+S  SLYL+K    A     P                          V+AH FC  CGVHV HAP+FP++AVA VN  C+   ++ SLAV  +    A +PG+G P +
Sbjct:   92 VMHTGSCHCGNMTFEVQAPEHLAAVEGGSKLRYPFIIVPAGRFKLTSDESYCSLYLVKSPSAAAPHAQPTLDSSSCXXXXXXXXXXXXXXADVIHVAAHLFCSNCGVHVCHAPNFPNSAVAHVNAQCLDARSVASLAVAVLSDA-ALLPGVGAPAE 246
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A2A4VQ08_9PROT (Aldehyde-activating protein n=1 Tax=Kordiimonadales bacterium TaxID=2030814 RepID=A0A2A4VQ08_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 2.140e-12
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 1 
Query:  919 VLHVGSCHCGGLMFEVDAPAHLVAIEGP----SKVRYPFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCIRPETIKSLAVGFMKG 1272
            V H GSCHCG + FEVDAPA + A+       ++  +  + V  D FR+T+ + N + Y  K R           + H FC+ CGV   + P   H     VN++CI PET+ S+  G   G
Sbjct:    4 VTHKGSCHCGSVAFEVDAPADIDAVSCTCSICTRTGFIHVFVGRDAFRITAGEDNLTEYRFKTR----------TAKHLFCKTCGVKAFYVPR-SHPNGWSVNLNCIDPETVTSVKQGEFDG 114
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A7Y3CPG4_9GAMM (GFA family protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y3CPG4_9GAMM)

HSP 1 Score: 67.8 bits (164), Expect = 4.420e-10
Identity = 41/117 (35.04%), Postives = 55/117 (47.01%), Query Frame = 1 
Query:  919 VLHVGSCHCGGLMFEVDAPAHLVAIEGPSKV----RYPFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCIRPETIKSLAV 1257
              H GSCHCG + FEVDAPA + A +    +     +  + V A  FRL   +   S Y               V+ H+FCR CG+   + P   H     VNVHC+  ETI+S+ V
Sbjct:    2 TTHKGSCHCGQVRFEVDAPATIRADDCNCSICRKSGFLHLLVSAADFRLLQGEDELSSYTFNTG----------VAKHYFCRHCGIKSFYIPR-SHPEGVSVNVHCLEMETIESIEV 107
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A2E6E9Y8_9GAMM (Aldehyde-activating protein n=1 Tax=Woeseia sp. TaxID=1980636 RepID=A0A2E6E9Y8_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 1.730e-9
Identity = 41/117 (35.04%), Postives = 54/117 (46.15%), Query Frame = 1 
Query:  919 VLHVGSCHCGGLMFEVDAPAHLVAIEGPSKVRY----PFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCIRPETIKSLAV 1257
            V+H GSCHCG + FEVDAP +L   E    + Y      I VP  +FRL       ++Y              KV+ H+FC  CGV   + P   H     VN  C+  ET+ S+ V
Sbjct:    2 VVHRGSCHCGKVKFEVDAPTNLEISECNCSICYMVGFQHIHVPKSRFRLLEGKDVLAVYKFNT----------KVARHYFCPYCGVKSFYVPR-SHPDGISVNARCLNQETVSSIQV 107
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A661DA95_9GAMM (GFA family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661DA95_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 9.820e-9
Identity = 41/117 (35.04%), Postives = 57/117 (48.72%), Query Frame = 1 
Query:  919 VLHVGSCHCGGLMFEVDAPAHLVAIEGP----SKVRYPFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCIRPETIKSLAV 1257
            + H GSCHCG ++FEV+AP HL  +E      SK  Y  + VP  QF L     N    L+K      Q+       H+FC+ CG+   + P      V+ VNV C+   TIK + +
Sbjct:    1 MKHKGSCHCGAVVFEVEAPEHLHVLECNCSICSKSGYLHLIVPKSQFNLLKGSDN----LVKYTFDTHQEK------HWFCQTCGIKSFYIPRSNPDGVS-VNVRCLDSSTIKRIDI 106
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A7S1Y434_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y434_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.050e-8
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:  919 VLHVGSCHCGGLMFEVDAPAHLVAIEGPSK--VRYPFITVPADQFRLT-SDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCI 1227
            ++H G CHC  + FE+ AP  L       +  ++YPF+T  A  F+L    D  G  Y+           +  V+AH FC+RCGVHV+ APD  H     VN +C+
Sbjct:  136 MMHRGHCHCKAIEFELLAPKLLRTTISSQRGEIQYPFVTTEAPNFKLVRGSDVLGIYYVSVPTVTKSPGISATVAAHSFCKRCGVHVLQAPD-SHTNSLRVNANCL 240
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A8J7J3I8_9CYAN (GFA family protein n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7J3I8_9CYAN)

HSP 1 Score: 62.8 bits (151), Expect = 2.490e-8
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 1 
Query:  919 VLHVGSCHCGGLMFEVDAPAHLVAIEGP----SKVRYPFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCIR--PETIK 1245
            +++ GSCHCG + FEV+AP HL   E      SK  Y  + VP ++F+L S + N + Y  +            V+ H FC+ CG+   + P      V DVNV C+   P+++K
Sbjct:    1 MIYQGSCHCGAITFEVEAPEHLEVDECNCSICSKSGYLHLIVPKNKFKLLSGEDNLATYTFQTG----------VAKHKFCKTCGIKSFYIPRSNPDGV-DVNVRCLETLPKSMK 104
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A5C8ZZI6_9GAMM (GFA family protein n=1 Tax=Parahaliea maris TaxID=2716870 RepID=A0A5C8ZZI6_9GAMM)

HSP 1 Score: 62.8 bits (151), Expect = 2.490e-8
Identity = 39/112 (34.82%), Postives = 53/112 (47.32%), Query Frame = 1 
Query:  919 VLHVGSCHCGGLMFEVDAPAHLVA----IEGPSKVRYPFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVADVNVHCIRPETI 1242
            ++H GSCHCG + FEVDAP  + A         K  Y  + VP  +FRL S + + S Y               V+ H FC +CG+   + P      V DVNVHC+  E +
Sbjct:    1 MIHQGSCHCGAVTFEVDAPEVIEADYCNCSICKKSGYLHLIVPLGKFRLLSGEDSLSTYTFNTG----------VAQHTFCTQCGIKPFYTPRSNPDGV-DVNVHCLDTENL 101
[Close]
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Match: A0A7S2UKU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKU5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.260e-8
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:  922 LHVGSCHCGGLMFEVDAPAHLVAIEGPSKVRYPFITVPADQFRLTSDDSNGSLYLLKCRPPAGQDTT--PKVSA-HFFCRRCGVHVVHAPD 1185
            LH+GSCHC  + FE+ AP+   A +   K+RYP +      F LT    +   Y ++  P    D    P V+A H FC  CGVH++ APD
Sbjct:  118 LHLGSCHCRSIHFELGAPSSPQAYDCNGKIRYPHLRTTEQNFMLTKGTEHLKTYYVRL-PSLSHDRKDGPGVTAAHAFCTVCGVHILRAPD 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1459.2750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYU7_9PHAE2.050e-7552.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3S2_9STRA4.230e-3145.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2A4VQ08_9PROT2.140e-1235.25Aldehyde-activating protein n=1 Tax=Kordiimonadale... [more]
A0A7Y3CPG4_9GAMM4.420e-1035.04GFA family protein n=1 Tax=Woeseiaceae bacterium T... [more]
A0A2E6E9Y8_9GAMM1.730e-935.04Aldehyde-activating protein n=1 Tax=Woeseia sp. Ta... [more]
A0A661DA95_9GAMM9.820e-935.04GFA family protein n=1 Tax=Gammaproteobacteria bac... [more]
A0A7S1Y434_9STRA2.050e-835.85Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A8J7J3I8_9CYAN2.490e-833.91GFA family protein n=1 Tax=Lusitaniella coriacea L... [more]
A0A5C8ZZI6_9GAMM2.490e-834.82GFA family protein n=1 Tax=Parahaliea maris TaxID=... [more]
A0A7S2UKU5_9STRA3.260e-838.46Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1459contigH-paniculata_contig1459:12626..20250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue5.5e-09
Seed eggNOG ortholog112098.XP_008616252.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.pericentric heterochromatin assembly
EggNOG OGsCOG3791@1,KOG4192@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005150.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1554
Cds size1098
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.716087-UTR-H-paniculata_contig1459:12625..128661622929160.716087-UTR-H-paniculata_contig1459:12625..12866Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 12626..12866 +
1691480754.540875-UTR-H-paniculata_contig1459:12625..128661691480754.540875-UTR-H-paniculata_contig1459:12625..12866Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 12626..12866 +
1622929160.7310598-UTR-H-paniculata_contig1459:13051..132461622929160.7310598-UTR-H-paniculata_contig1459:13051..13246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 13052..13246 +
1691480754.5509074-UTR-H-paniculata_contig1459:13051..132461691480754.5509074-UTR-H-paniculata_contig1459:13051..13246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 13052..13246 +
1622929160.74638-UTR-H-paniculata_contig1459:14881..149011622929160.74638-UTR-H-paniculata_contig1459:14881..14901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 14882..14901 +
1691480754.5590036-UTR-H-paniculata_contig1459:14881..149011691480754.5590036-UTR-H-paniculata_contig1459:14881..14901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 14882..14901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.7592263-CDS-H-paniculata_contig1459:14901..154531622929160.7592263-CDS-H-paniculata_contig1459:14901..15453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 14902..15453 +
1691480754.5670798-CDS-H-paniculata_contig1459:14901..154531691480754.5670798-CDS-H-paniculata_contig1459:14901..15453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 14902..15453 +
1622929160.7731767-CDS-H-paniculata_contig1459:17480..176001622929160.7731767-CDS-H-paniculata_contig1459:17480..17600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 17481..17600 +
1691480754.575114-CDS-H-paniculata_contig1459:17480..176001691480754.575114-CDS-H-paniculata_contig1459:17480..17600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 17481..17600 +
1622929160.8034093-CDS-H-paniculata_contig1459:19156..193511622929160.8034093-CDS-H-paniculata_contig1459:19156..19351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 19157..19351 +
1691480754.5898018-CDS-H-paniculata_contig1459:19156..193511691480754.5898018-CDS-H-paniculata_contig1459:19156..19351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 19157..19351 +
1622929160.8191314-CDS-H-paniculata_contig1459:20019..202501622929160.8191314-CDS-H-paniculata_contig1459:20019..20250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 20020..20250 +
1691480754.6028175-CDS-H-paniculata_contig1459:20019..202501691480754.6028175-CDS-H-paniculata_contig1459:20019..20250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 20020..20250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1459.2750.1prot_H-paniculata_contig1459.2750.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1459 14902..20250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1459.2750.1

>prot_H-paniculata_contig1459.2750.1 ID=prot_H-paniculata_contig1459.2750.1|Name=mRNA_H-paniculata_contig1459.2750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=366bp
MRRSSSMRSEPTSNTQTDRFLGALVVVCASAVIGAVGAHAGSTLSSLFRF
AGGGGGRFGDKHRATKKKSSRRRKLRRGRACAPPFPNAVDSDDDDDDSNS
EREGEGDAYHVYAHGARSVGSGDDEWRAAGRGARERRGDGGDVGRSSSSS
SSSSVLHVGSCHCGGLMFEVDAPAHLVAIEGPSKVRYPFITVPADQFRLT
SDDSNGSLYLLKCRPPAGQDTTPKVSAHFFCRRCGVHVVHAPDFPHAAVA
DVNVHCIRPETIKSLAVGFMKGGGAEVPGMGDPVQGVYEVNKEAWSDAMR
EKVDAALQQQQQQPSNLERSGAGGQTSNRVPSPRRRPSSGPARRGTAGGD
REAASSRTLSDGGVVG
back to top

mRNA from alignment at H-paniculata_contig1459:12626..20250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1459.2750.1 ID=mRNA_H-paniculata_contig1459.2750.1|Name=mRNA_H-paniculata_contig1459.2750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7625bp|location=Sequence derived from alignment at H-paniculata_contig1459:12626..20250+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATAGCCCCGTTTTCTTTGCCCTCACCAACAAGGAACTGGCGAATAAGA
AATACAGATCAACCTACCGCCCAAAATAAGGTTTTGAGCCTCAAGCCGAA
CAAGGGTTTCTTACTCGCCGGCTGCATCTGTAGTGGGTCAGGTACTTTGG
TTCATTTCAAGTGCCCCTTCTCCGCCCCGCACGCCGTAGGCGAGTCTGCT
GAGACAAGAAAGGCCTACGGTTCGAAGATCGTGTTATCCAGGTATATGCC
ACCACTTTCCATGTCCATGGCCGTGACCAACGCGTAATCGCTTACACTGT
AGAGTCTCAGTCCATTGCAATCGCTTGTGACGAAAATGCTGCCTGACAGA
TTGATTTCTCAAGCCCGCCATAATAATGGATTATGACCGATGATGGCAAC
TGAACCCATTTTTGTTTTTCTTAAAGGTGTCGCTGCTTCTAGCGGCAACC
AACCCCTACCTGACCAGGGGCTCCCTCCCCCAGCACAGAGCACGGCGGTG
GCGTGCCCACCAGCGCGGCTCCAAAAAAACTGTTTTGCCTGTGCATACAC
CCCGCCGTGTGCCCCGCGAAAGTTGGAAAAGAGTAACACAAAACTTTGTG
TTTCGGGCGTCCAAAAAAAAGGTGCGCAAAACGAAAAGAAATACGCAGTA
CGTGCCTTTGTGATGAACGCTATAGGATGTGCATCGTAGGTGTCCAACAA
CCACTGCGTTTGCTTGATGTCACGAAAGGTTACGAGCTTGCTGTTTTTTG
TGGAATCTCCCTGAAAGATGGGAGATGATAGGTAGGGACTGACTGCTCAC
AGGAAATGAAGCACAATGCTTTGCTCGCCTTGAGACTGTGGTAGCGAATT
TTTGAGGTCAACTTGATTTATACCATATTTTCTGCAGGGTTGTTTGTAGA
TCTGTCTACTCACACCATACTGTGTATCTGCAACACTCTTATCAATTGTA
GATAACAGCCCTCTGTGTATTCTGCTGTTCAGGGCGGATGGAACAGAAGA
TAAGGCCAAGGCCCGGGAGCACTAAACCTCGCTTCCGAACGTAACGCTCT
AGATTTCCTCCTTGCAATGCTCCGTCAATTCTTGTGGTCGATGGTCGAAA
TTTCGCCGCGTCTGGCGTTGCCAAGCCCCACTGACGGTCTGTTGGGGCAG
CGCGTTTGGTTCACCGACGTACGAAAGATGGGGATAGATTTGCGAAACTT
GAGGACCCAAGGAAAATCAATATCTCCTGTTCGAGTTTCTCATGAACACA
CATAACGAACGTGTATGCAGCACGCAGCACGCATCTATTTTCCCATGCCT
TGCTTTGCAGTTCTGCCAGACTGTAAGTTTCAATAATAGCGAAGGTTACA
GTGTCTTTATATCTGGGATTTCGTTCAAGAGACGGGCAGTGATACAGTCC
TTCGCATCTTCAGGCGGTTGATCATTTGCCATTTGGACTCCTGTTTAGGC
TAGCCCATTCGAGCACGCGTGCTGCTATTGATTCAGACTTGCATGTGGAG
AGTGGGGTGAGGTGGATCGGAACTTGAAGCAAAGGCTGGAGTTTTCGCAT
ACTGCAGATATGCTGCACCTGGAACTATTTTTTGGGGGTGTGCGCGGCTT
GGATTCGACAAGAGCACGCGTGCTGAAATGCGCGGCAGCGGCTCAAAATC
GGCCGCGCTGAAGTATATATGCGTGTAAGCAAGCTCAACATTGTAACATT
CCTGTATGCATGTATTAATAGTATCTCATGAGTATGTTGTTAGGCATCAT
GATAACCGCAAAATGTGTTGTTTTCGTCGGGGGAGATGCTGGACTATCGA
AACTACCATGTACTGTAGGATGGTGCACTGGGGATCGGGTGTGGGGGGGC
ATCATGAATACCGGCCTGATTTGTACCAGACCGGCCTCCGTGAAAAGAGC
TAAATAACTGTACTGTATTGTGTTGTGCTTTCTGTCCAGCACGAATGGTC
GCTCTGCCTGCATAGAGAAAATACAGCCAATATATACTTGCAGAGCTGCT
GTCGTTTAAAATCTTCGCTCCACTATTGAGAATGTGATGGGGATCAAAAA
ACGAACCCAAGAAGAAAAGACAGCAACCCTTCCCCATGTCTTTCAACTGT
TGAACTAGATTCACCTTTTTGTAAGACCACTGCCCAAACAAAAAGACGTT
TGAACACTGTACTGTACTAATAAGAATTACCTTCTTCTTACCCTCTTGCC
TAAAAATCCATGCCTTGTTTTCCCCACAATGCAACACGATCGGGTTTTTT
TCCCAGTTGTCATCAGTCATATCATTATGAGGAGGTCTTCATCAATGCGC
AGCGAGCCGACCTCCAACACACAGACGGACCGCTTCTTGGGCGCCCTGGT
CGTCGTATGCGCCTCCGCGGTAATCGGCGCCGTGGGTGCCCACGCGGGCT
CGACGCTCTCCAGCTTATTCCGCTTCGCCGGCGGCGGCGGCGGCCGTTTC
GGGGACAAGCATCGTGCAACCAAGAAGAAGTCGTCGAGAAGGCGAAAACT
TAGGCGTGGCCGTGCCTGCGCTCCTCCATTCCCCAACGCTGTCGATAGCG
ATGACGACGATGATGACAGCAATAGTGAAAGAGAAGGAGAAGGGGATGCG
TACCATGTCTACGCGCACGGGGCTAGGTCGGTCGGAAGTGGAGATGACGA
GTGGAGGGCAGCGGGTAGAGGAGCGCGGGAGCGGCGGGGGGATGGGGGGG
ACGTAGGAAGGTCTTCGTCGTCGTCGTCGTCGTCGTCGGTATTACACGTG
GGGAGTTGTCACTGCGGAGGGTTAATGTTTGAGGTGGACGCGCCGGCGCA
TTTGGTGGCGATTGAGGGACCCAGCAAGGTTTGTTTGTGCTGCCGTTGTA
ATGAACTTGATACCATGATCGCACTGAGATAATATTTTCTTTCGTTGACC
TCACAAGCGTTACGTAACGTGCGGAGGTTTTGCTGTGGAGTATTTTTGAG
GAGGGATACAAAGAAGGGTGGATTCTGATCTGGCAAGAGTGCTATGAGTG
TTTTGCAGTCGAGGGACAACGCAGTCGCAAACCATCCACTTGTGTTACAG
AATGGATTTTTGTTACTAGAGGAGGGGTTGAGAGGAACTTGCCTGTTCGT
CGTGAAATTTTGTACTTTCTGTCGTAAGTACATTACCTTGCCCTACTCAC
CTAGTGTGTTCCAACCTAGATTGCTCTTTACTCACTGCTCAACCGTGTCG
CCATTTGGAGTCGACGAGCCGAACATTCTTCCTATTCCATGCCCTGCTTA
ACTTTCGCGAATGTTATGTAGATACCCCGTCGTTTTTCCAAAAGGAAGGC
GTATTTTCGCGAATAGGAAAAATTCTTTTTTCCTTCGTGATAACTGCGTA
AACTGTACAAATGGTCAATTTGGACTGACGAAGTTCTACGATGCGTTCTT
TTTTTCTTTGTTGATGTTTTGACTATTTTGTTGGGGAGATGCGTATCTCT
CAGTTTAGGTATGATACACCACAAACCCGTTCGAGCCTCAAAAACAGGAA
GTGGAGGGGAGAATAAAGTCGCCCGTATTCCCCCTTTCAGACATGCATAC
CTACTAGAACCCTCCCTACCGCAGGGTAAATCGAAATAAGCCCTGTAATG
CGTACGTCATTTCACTGTTTGAATTTTTCGTTGCCATCAACAGCGGGTCT
GAGGGATACATATGAAACAGTTTGAGCAGTTGAGGGACTGCGCGGGGTAT
ATAATACATATTACAGCGAAATTTCTAAAGGCAGATATAACCGGTTTAAG
CCCCCAAAAAGAGGCGCAGAGGAGGGCCGGGGGATGACGGGAGGGGTAAA
CGGAGAGATGCTAACCACCTTGTATTTGGAGAACATTTTTGGGATAAAAA
GTGTGCTCTTTTGTTTTTTTCCATCTGCTGACGGGGTAATCAGTGGCCTT
TGGCGAAGCACGAGAACAAAAGTCAGGTGAAAAAAGTATTGGACACATTA
TGTAAAACTGGTGTATGGAAACTGAGACGTGATGATCTGGTGTAAGCACC
ATCACAAAAGGTTTTCCCATGGTCTCGTAGGGATCCTGAAAAAAATAGTC
ACTTTTGGTCCATGTATAATAGCCCAGAGGAAACTGGAGCAGGAAATGAA
TGCTACACTCCTAAGATCACTCCGAAATAGCATCCATCCCTCGCCGAAGC
CAACATTCCCTGTGCACCGAAACTTACGGAACAGCGAGAACGCAACTTGC
CGGGGAGGTTCCGCAGTTTTTTTCTATATTGCAGTCCAGTTTCTCAGACC
CGCGGTCAGATATTCACCTCTCCGACACACGATTTTGGTTGTTGACTACT
GCGCCGCGTTGGAAAAAGACCTGAAGGGGCAGTTATTGCATCGATCGGGG
CTTACAGACTGCTAATACTTCGAAAGAGCTGGATGCTACACATCTATGAT
GCTTTACCTGCTGTTTGTTTCCCCATTTGAGGGTCTACTGTGACTTACCG
AGTTCCCATAGCCATGCTCAATCGAAAGTAGACGTAGTAGGTCGTCTTCC
TTTTATATTGTCGTATGCACTTCCACTTGTGATGTAAATCTCTGCTCCGA
CGTACCGTATTATATCCTTTGTTAGCATTGTACCTTGGACCAACAATATA
TATTCGACAATTTCTTGTTGCGTGGTCCCCTCTAAAACTCATAAAAACAA
AATCTGCAGGTGCGACAGTTTTTTCCGTGACGATCTGCGCCGAATCACTT
TCGCCGCTTGGATCTCGGCCATCTCAACTGAAAAACGATTTATGGTGCTG
CTGCACACGTTTTTGCTGCCTGGAAGCGAAGCGTCCGCTATTACGATTGT
TGGAAGAAAAACCTCCATGTTATCCGTTCATCCTGTGTTAACGATTGTAC
CCCAGGTACGGTATCCGTTCATCACGGTCCCCGCCGATCAGTTTCGACTC
ACCTCCGACGACAGCAACGGCTCTCTGTACCTGCTCAAGTGCCGGCCGCC
AGCGGGACAGGACACGACACCGAAGGTGACAGGGTTGAATTTAGAATTGA
TATAGATTAAATCTTTTTTTACTGCTCATTTTTTCACAGCAACTGGGTTG
TTGATGAATGGATTATGATCAGGGTTACAATATCTATTTTTCTTTCATGT
GATTTTCTCGGGGGGGGGGGGTTGGAGGGACCGGCCGAATATATATTACA
CCGCCGCTGACGTTTGTAGTTTTGCAATCCTCCACGATGAGCCATGCCAG
ACTTGATCCACTGGTCGGAACGGTGTTTCCATCTTCCTTTGTTTTACTGT
CGATCACGTACTCCCACAACATGAAGACCCCCGAGCATGTCGTTGGTCTA
GCCGTTTGAAGTGGTCAGTGATAATAGTGTTGCAGGTAAATGTATGTTTT
CCCGCTTGTCATCCAAGCTACCGGACGCAGTCGGACGGCGAGCGTGTTCA
TCTTTACTTTAGAGTGGCCAGAGCTACGCCCACGAAATTCGTGCCCGCCC
TCGACCCGTGGGCTCACTGCTCTCGGCAGTGGAGGCTCGCGTAGCGAACA
GCGCTGCTTACTGCGCTGCTAGCCTGTATTCGTTTTTCAGGAATTACTCG
ACGACGGACTTGGAATGCTGTCCCGAATCGATCACCTTATCCTATTCAAT
AATGAAGGATGTGAACACACCTTGAATTGTTGCCCCCTTGTTGGAGTTAT
GTATACGAACACCGTGGTAGGTTGTGGCAATTATTGAAATTGTTTTGTAT
CACCGCCTCTCCCCCCTACTCCCGAGGACGCGCGGTCAATGGTCTCACAA
CTTCGACATGCGAAACATGAGTACCTCCCCCCTCCCCTCGAGTTGGCTGA
GATTTGATGTCAGCTACATAGCCTCAAGTTTTGTGCAACAGAGTTATTAT
ATGGCGTTCAGAGTGGGAGTTCATCTCGCTGTGGGAGGTTTAACTTAACA
ATGACAATTTCAGTTAGTAAAATGGAGGATTGTTTAATTTTCGTGATGAT
GTCATTGGCTCATATGAAAAAATAACTTCATGTCTTTCCCACAGTATACA
CATGCGAGCGATACAGTGATACTCCCTTGTGAGGGTTGCCGTAGCCGATG
TCATGCGTGAGCAAAGAAGTGCGAGAATTCCTGGTACTGGGTCATGGTGG
GGTCAGAACTTATGTAATGTGAACTGGAGCCTGTCCATCTACCAAGCTGC
AAGCCCAAATATCCTTCAAGTCGATTTAAAATTCATTTCACCTGGTAAGT
ATGCGTGGGTAAATCTGGATGAGACCCCCCCCCCTATTGATTCAATTTAG
CTGATTAAGAGTGTGCAACTGCAGATTGAAGTTGGCTGAATAACCTCAAC
ATGGGTACAACGAAGTTACTACACAAGGTCCAAAATTATAGTTGACCTGA
CTGTGGCAGGGTCAATTCAGAAATTAGAATTTTTTAGGTGGTGAAATGAA
GGATTGTTGTTAACCTTCATGGTGTTAATAGTTCATATCATATAAGAAAT
ATTTCATGATTTATTCCCCTCCTTCCCACCCGTTCCCCTCGTCTCCCCAC
CCCACCCTATGCTCTTATACACCCACCGCAGGTATCGGCACACTTCTTCT
GCCGGCGATGCGGAGTACACGTGGTCCATGCGCCTGACTTTCCTCATGCA
GCGGTAGCCGACGTGAACGTGCACTGCATCCGCCCGGAGACGATAAAGAG
CCTCGCTGTGGGTTTCATGAAGGGGGGCGGGGCCGAGGTGCCGGGCATGG
GGGACCCCGTGCAGGGGGTGTACGAGGTGGGCGTGCGGACTGGACTGGGT
GATGCTCTCGAGCAAGCCACAGTGCAGTTGAACTTACTAGAAGTGGGGTG
GGAAAATCTAGGTTTGATTTGATAGCGGTGCGTGTAATGGCGATGGGGGT
TGGAAAATAGGAGGCAACACAAAGAATCATGGCAATGTGCAGATGTACAT
ATTACCGCTCTTCCTGCTTCTGACTAGTAGCGTTCCGGCTTATTGTTTCT
CGTTTGTTGCGGCGGAATCGGTTGCGAGTTGGTTATTCACCACACCCCAA
TTTTTTATGTTCCGCAACTTTACCCCAAAGAGGAGCCTCTTTTTCGCCAA
CACATATTACTGTACTCTGTTTTGTCGCTGAAACGCGTGCTACTCCAGTT
TGTGTTATTCCACCTCACACGCTTTCGGTCTGTCGGGCTGGGATTGGTCA
GGCCGGACCGGACGAGATTGTTTTCGTTTCCCATGCCTCCCAGTCCTTCT
ATTTTCTTTGTGTTTAGCTTGATGTTGCGTAAAAAGAACCCAACCAGCCA
ACCAACTAACTAATCAACAGAACAAGCAAACAAACGCGATAGAAACCACT
CCCGCACCAAAAAAAAAAAAAAAGTCGCTCCATAAAGACACTATCTTTCC
TTTTTGATCATGATCACGTGGGAAAAACAACTAAAAAAAAAAAGGTGAAC
AAAGAAGCGTGGTCCGACGCCATGCGAGAAAAAGTGGATGCAGCTCTACA
ACAGCAACAGCAACAACCCTCGAACTTGGAAAGGAGCGGGGCTGGGGGCC
AGACGTCAAATCGCGTCCCGTCACCGCGACGCCGACCTTCTTCTGGCCCT
GCTAGAAGGGGGACTGCGGGTGGGGACAGGGAAGCGGCCTCCAGTAGGAC
GTTGAGCGACGGAGGCGTGGTCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1459:12626..20250+

>mRNA_H-paniculata_contig1459.2750.1 ID=mRNA_H-paniculata_contig1459.2750.1|Name=mRNA_H-paniculata_contig1459.2750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2196bp|location=Sequence derived from alignment at H-paniculata_contig1459:12626..20250+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAGGTCTTCATCAATGCGCAGCGAGCCGACCTCCAACACACAGAC
GGACCGCTTCTTGGGCGCCCTGGTCGTCGTATGCGCCTCCGCGGTAATCG
GCGCCGTGGGTGCCCACGCGGGCTCGACGCTCTCCAGCTTATTCCGCTTC
GCCGGCGGCGGCGGCGGCCGTTTCGGGGACAAGCATCGTGCAACCAAGAA
GAAGTCGTCGAGAAGGCGAAAACTTAGGCGTGGCCGTGCCTGCGCTCCTC
CATTCCCCAACGCTGTCGATAGCGATGACGACGATGATGACAGCAATAGT
GAAAGAGAAGGAGAAGGGGATGCGTACCATGTCTACGCGCACGGGGCTAG
GTCGGTCGGAAGTGGAGATGACGAGTGGAGGGCAGCGGGTAGAGGAGCGC
GGGAGCGGCGGGGGGATGGGGGGGACGTAGGAAGGTCTTCGTCGTCGTCG
TCGTCGTCGTCGGTATTACACGTGGGGAGTTGTCACTGCGGAGGGTTAAT
GTTTGAGGTGGACGCGCCGGCGCATTTGGTGGCGATTGAGGGACCCAGCA
AGATGAGGAGGTCTTCATCAATGCGCAGCGAGCCGACCTCCAACACACAG
ACGGACCGCTTCTTGGGCGCCCTGGTCGTCGTATGCGCCTCCGCGGTAAT
CGGCGCCGTGGGTGCCCACGCGGGCTCGACGCTCTCCAGCTTATTCCGCT
TCGCCGGCGGCGGCGGCGGCCGTTTCGGGGACAAGCATCGTGCAACCAAG
AAGAAGTCGTCGAGAAGGCGAAAACTTAGGCGTGGCCGTGCCTGCGCTCC
TCCATTCCCCAACGCTGTCGATAGCGATGACGACGATGATGACAGCAATA
GTGAAAGAGAAGGAGAAGGGGATGCGTACCATGTCTACGCGCACGGGGCT
AGGTCGGTCGGAAGTGGAGATGACGAGTGGAGGGCAGCGGGTAGAGGAGC
GCGGGAGCGGCGGGGGGATGGGGGGGACGTAGGAAGGTCTTCGTCGTCGT
CGTCGTCGTCGTCGGTATTACACGTGGGGAGTTGTCACTGCGGAGGGTTA
ATGTTTGAGGTGGACGCGCCGGCGCATTTGGTGGCGATTGAGGGACCCAG
CAAGGTACGGTATCCGTTCATCACGGTCCCCGCCGATCAGTTTCGACTCA
CCTCCGACGACAGCAACGGCTCTCTGTACCTGCTCAAGTGCCGGCCGCCA
GCGGGACAGGACACGACACCGAAGGTACGGTATCCGTTCATCACGGTCCC
CGCCGATCAGTTTCGACTCACCTCCGACGACAGCAACGGCTCTCTGTACC
TGCTCAAGTGCCGGCCGCCAGCGGGACAGGACACGACACCGAAGGTATCG
GCACACTTCTTCTGCCGGCGATGCGGAGTACACGTGGTCCATGCGCCTGA
CTTTCCTCATGCAGCGGTAGCCGACGTGAACGTGCACTGCATCCGCCCGG
AGACGATAAAGAGCCTCGCTGTGGGTTTCATGAAGGGGGGCGGGGCCGAG
GTGCCGGGCATGGGGGACCCCGTGCAGGGGGTGTACGAGGTATCGGCACA
CTTCTTCTGCCGGCGATGCGGAGTACACGTGGTCCATGCGCCTGACTTTC
CTCATGCAGCGGTAGCCGACGTGAACGTGCACTGCATCCGCCCGGAGACG
ATAAAGAGCCTCGCTGTGGGTTTCATGAAGGGGGGCGGGGCCGAGGTGCC
GGGCATGGGGGACCCCGTGCAGGGGGTGTACGAGGTGAACAAAGAAGCGT
GGTCCGACGCCATGCGAGAAAAAGTGGATGCAGCTCTACAACAGCAACAG
CAACAACCCTCGAACTTGGAAAGGAGCGGGGCTGGGGGCCAGACGTCAAA
TCGCGTCCCGTCACCGCGACGCCGACCTTCTTCTGGCCCTGCTAGAAGGG
GGACTGCGGGTGGGGACAGGGAAGCGGCCTCCAGTAGGACGTTGAGCGAC
GGAGGCGTGGTCGGGGTGAACAAAGAAGCGTGGTCCGACGCCATGCGAGA
AAAAGTGGATGCAGCTCTACAACAGCAACAGCAACAACCCTCGAACTTGG
AAAGGAGCGGGGCTGGGGGCCAGACGTCAAATCGCGTCCCGTCACCGCGA
CGCCGACCTTCTTCTGGCCCTGCTAGAAGGGGGACTGCGGGTGGGGACAG
GGAAGCGGCCTCCAGTAGGACGTTGAGCGACGGAGGCGTGGTCGGG
back to top