mRNA_H-paniculata_contig1459.2751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1459.2751.1
Unique NamemRNA_H-paniculata_contig1459.2751.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1459.2751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1459contigH-paniculata_contig1459:20259..24699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1788
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1459.2751.1prot_H-paniculata_contig1459.2751.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1459 20290..24019 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.4329858-UTR-H-paniculata_contig1459:20258..202891622929160.4329858-UTR-H-paniculata_contig1459:20258..20289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 20259..20289 +
1691480754.4315748-UTR-H-paniculata_contig1459:20258..202891691480754.4315748-UTR-H-paniculata_contig1459:20258..20289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 20259..20289 +
1622929160.505725-UTR-H-paniculata_contig1459:24019..246991622929160.505725-UTR-H-paniculata_contig1459:24019..24699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 24020..24699 +
1691480754.4636989-UTR-H-paniculata_contig1459:24019..246991691480754.4636989-UTR-H-paniculata_contig1459:24019..24699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1459 24020..24699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.4509182-CDS-H-paniculata_contig1459:20289..203791622929160.4509182-CDS-H-paniculata_contig1459:20289..20379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 20290..20379 +
1691480754.441123-CDS-H-paniculata_contig1459:20289..203791691480754.441123-CDS-H-paniculata_contig1459:20289..20379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 20290..20379 +
1622929160.470774-CDS-H-paniculata_contig1459:21618..222071622929160.470774-CDS-H-paniculata_contig1459:21618..22207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 21619..22207 +
1691480754.4488642-CDS-H-paniculata_contig1459:21618..222071691480754.4488642-CDS-H-paniculata_contig1459:21618..22207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 21619..22207 +
1622929160.4884503-CDS-H-paniculata_contig1459:23621..240191622929160.4884503-CDS-H-paniculata_contig1459:23621..24019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 23622..24019 +
1691480754.4563096-CDS-H-paniculata_contig1459:23621..240191691480754.4563096-CDS-H-paniculata_contig1459:23621..24019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1459 23622..24019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1459.2751.1

>prot_H-paniculata_contig1459.2751.1 ID=prot_H-paniculata_contig1459.2751.1|Name=mRNA_H-paniculata_contig1459.2751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=359bp
MAAQQRAAGGRAAIDSDVAALRRTAEQREKARQRMGFSRKPVGGTVPGTI
KASGGGGGRSTINTWGDVLMHVVSLPSSSSSSSRSSSSSGSNKNMNNRSY
TAINNGASNSNSRHRGNYQHGCSNGIGCGLEAGSEGTFLRRGLSSSTTAQ
QQQQEEREVVEGVCEQQQWREGGASVVGGMYLPPRAATHASRVPTGNGNA
EGYWAAIEQEDDRRRALGHSGRRSLSVDSSPSSQVAVTSPEAQGVAYQDG
IDASGGERSSAGQKGGGGAGSGGGRSAGRPAPLGTTTQNGARNVGMGYGE
SVKGFKSAVVVVAGSDDGDGSSSAEDLSSPEREENSPLFVRPLPVPEVVS
GGYAAPQA*
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mRNA from alignment at H-paniculata_contig1459:20259..24699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1459.2751.1 ID=mRNA_H-paniculata_contig1459.2751.1|Name=mRNA_H-paniculata_contig1459.2751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4441bp|location=Sequence derived from alignment at H-paniculata_contig1459:20259..24699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTGGAGGGGAGGTAGTGGGGTCGAACGAGATGGCGGCGCAACAGCGCG
CGGCTGGAGGCCGGGCGGCGATAGATTCCGATGTTGCTGCTTTGCGACGG
ACGGCGGAACAGAGAGAAAAGGTGAGACGAACGCGCAGGGAGTTTGTAGA
GAGAGAGAGAGAGGTCGTTGGAGGTGTGCTTATCAGCACATCTTGAAGCT
GCGGGATTACTTATCTACAAAACTAATCAAAGTAGAGGCTGGGTTCGGGC
CGCTTGGTTGCATTGGCAGCTGCCAGAATCTTGTGGGAAGATCCAAAATT
GGGTCGGTTAGCTATATGCACGCTAGTTACGGTGTGTCTACTATGTTCAG
TGTAGGGTTAAGGGTTCGCGTAAGTGCTGGAGTGGGGTGTGATAGGGTGG
GTTTGAGCAGCTGGGTTGCTGGAACCACCAACGACTGCTAATAATACTCG
TAAATCGAATCGACAGGCGTGGGTCTTTACTCCATGTTGCCTCTCATTCT
GAAACTCCGGCGAATGCTTTATGATTTTCGTGGCGAATATGCCAAGTATT
TGTGTTTATCCGGAGGGTCAAATATAGCAGCCGATGTTGTGACGTACGAG
AGATCCTGGTACGTGGTCATGATAGAGGTAAGATATATGTCATGTGAGGG
TGGGTATGTATGGTTTGTTGTGGATGAGTTTATGGCAATGGCCATAGGGG
ATGAGGCACCTTCCACATCTCGCTCTATCAGCATGGTGTCCTCTTAAGTT
CGCACAATGGGGCTAGCTAGGCCCCGGGCTGGAAGCCAGCACTCCCCAGC
ACGAGTACAGTAGAGCTATTCGCATAGGGGGTTGCACAAGGAACTTTCTT
GACTAACTTTTGCTGCCCTATGTGTCATGCTCGCATATTTCGATCTCTGT
TCCGCGAATATAAGTTTTTCGGTTGCACCTGCTGGGCGTTATATATATAT
ATGTAGAGAGAGAGAGAGAGGGTTAAAATAAGTAAATGTTCGACAGGTGA
AAATATTGCAAAAAGAACGCTCCCTCTTTTTGGTCTAGTTTTGCTGATGA
GTGTATACAACTGAATTTGAACTTTCTGCATAATCTCTAAAATGGGAACG
ATGGACTTCATCATTTGAGCGCCAGAGCTTAGTTCTACAAACTGTGGCAA
GTGAGTGGGTTGACCTAGAAATGACATTCTCGGTGAGTGAAAGGTACCCC
TTGTTTGATTTTGCTGAAAAGTGTACGCAATTGCGAATTAAAGTCATTTG
TATACGCCCCCCCCGGTCCTACATCTGCGATCGTCGCCTGCTGTTTCTTC
TTTGTTGTTTGTCCTCGATATCTTCTACTCATCGGTGGTGATGTTTTGTC
CACACCGAAGGCTCGACAGCGCATGGGTTTCTCTAGGAAACCCGTGGGCG
GAACGGTCCCTGGCACAATTAAGGCTAGTGGAGGCGGCGGTGGTCGGTCA
ACCATAAACACATGGGGAGATGTGCTCATGCACGTCGTCTCTCTTCCTTC
GTCGTCCTCGTCGTCCAGCAGAAGCAGCAGTAGCAGTGGAAGCAACAAAA
ACATGAACAACAGGAGTTACACAGCTATCAATAATGGTGCCAGCAATAGC
AACAGCCGCCACCGAGGGAACTATCAGCACGGCTGCAGCAATGGCATCGG
TTGTGGACTAGAGGCAGGAAGCGAGGGGACTTTTTTACGGCGGGGGTTGT
CCTCGTCGACCACGGCGCAGCAGCAGCAACAGGAGGAGCGAGAAGTGGTA
GAGGGGGTATGTGAGCAACAACAGTGGAGAGAGGGAGGAGCAAGCGTCGT
CGGCGGGATGTATTTGCCTCCACGGGCTGCTACGCATGCCAGCCGCGTGC
CCACGGGAAATGGGAATGCAGAAGGATATTGGGCGGCCATAGAACAGGAG
GACGATCGGCGCCGAGCTTTGGGGCACTCTGGACGAAGGTCTCTGTCTGG
TGAGCTCGGCGCGGGGGCACATGTGGTCAAATAAATACTGCTTGTGATGG
TGCTCTATTGATGTTTCTTTTCGGAGGGAAGGGGCGCGGTGGACATGAAA
TAGACGTGATTTGGCGGTACAGTGCAGTGAAGGCTCGTAAAAACGCGCTC
TTTGGTTGTCATGCAAGGAACATTGTCAATTTCACTAAACCTAGGCACTA
GGCTCGTACATACAAAGACGGTGGTAAAAAGTAGCTACACAGTTAGTTTC
CAAACCCACCATAGTCCCAGTGTTTCACGTTTCAGAGAAAGTCACGCCAA
CGGTAGGTTTCTCCTTCCCGTATCATCGTATCATGTCTTGTCCACCTGTG
CTTTGCTGTTGTAAGCACCGGAAAGCGCGCGACCTTGCTCATGTAGCTCG
TCGGCCTGCCCCACATTACCCACCTTGAATTTTTGAGAACTTATGTTCCC
CTAATCAGCGGTGGAGTGCTTATTTATTATATGGCCATCACGAAAGCAGC
CGGTGTTTGCCCTTTCTCGGTCTGCATTAATTCCAAGAGAAACTCCCCCA
AACGGCAAAAACATGAAATACGATCCGCCCTAACTAGCGCTAGTTAAGGC
ATTCTGTTGCCGTATTCACTACTGTCCATTAGTCGTTCCTCATGACTGGG
TATTAGCAAATGTATATTTAGGCTATTACAAACTCTCGTTCCTAGAGGCG
TGTTTACCAAATTTTGTTGAATGCGATGGTTCCGACCGAAATTTCGTACG
ATGCTTGGCTTTATGATACGAGGCTTGTTTAGCTGCTAGCACCACTACCT
CTAGCTCTTACCTTTCAAGGGTCAAATTGGGCCCCGCAGCGTCGAAAATC
GCCGAAGTGCTGCGTGGCTGCGCGGCGTGGCGACTACCCTGGAGCCAGGT
TGGTGAGGGGTCGGGCAATACACCATAGTAAAATCAACTACTGTGCAAAA
TTTCGATTATTCGGCAAAATTTGGTAAACTCTACTGGTTCCTGAAGGGTT
CAAAACAATTTGAGCGTTGGTCAGGTTCATGTTGATGTTGAGCGTATTTG
ACGTGACTAGCAAAGCATGCTGGAAAACGTTGATTGATATCGGTAGAATT
CGTTAATTGCCTTCAAGTCAACTTAACTGATGGTGACACACGGCACTTGA
CTGACAAGCCCTCTTACAACCCCTTCTCTCCCAGACGCATAGTCCCAAGG
TCATTCAACAGCGGACAGCAAAAGCAGCACATGAAATATTCTTGCTCTAA
AGGAGATGCTTTGATCCCAAGTGAACAAAGACCAACAACCGAAACACAAA
ATAGGTAAAGCTCAGTGTCGTTTACCCCCTGTGCCAAATATGTATCGATC
GATCTATAATGAAAGCATGAGCATACTCCGTTCCCAATCCCTCCTCAATT
GCCTCTAATACAGTGGACTCAAGCCCCAGTTCTCAAGTCGCCGTTACGAG
CCCAGAAGCTCAGGGGGTAGCCTATCAGGATGGTATCGATGCTTCAGGCG
GAGAGCGTAGTTCCGCAGGTCAGAAGGGTGGCGGTGGCGCTGGGAGCGGT
GGGGGAAGAAGCGCGGGGCGTCCCGCCCCGCTCGGTACCACTACGCAGAA
TGGCGCAAGAAACGTCGGGATGGGTTACGGGGAGAGTGTGAAGGGGTTCA
AGAGTGCGGTGGTGGTGGTGGCCGGGAGCGATGATGGCGATGGTTCGTCC
AGCGCGGAGGATTTGTCTTCGCCTGAAAGGGAGGAGAATAGTCCGCTTTT
TGTTCGACCTCTGCCTGTGCCTGAGGTAGTCTCGGGAGGCTACGCGGCGC
CGCAGGCCTAGCTAGTTTTGTAGAGGTTGTCCAATGTTGGGTGGTGGTGT
TTTGTTGTTGCTGTCAAGTCATGTTTGAGTTTTTTGTTTTGAGTTCGTTC
TTTTGACTGCTGCTGCTGTTGCTGCTGAATTGTTTTTTGCGGTTCCGCGT
TGATTTGTGATATGCGAAAAAATCTCACAGGCTTTCGCTTTTTCGTGTTG
CACCGCACAGTATCACATGGCTCGGTGTATAATGGTGCAAAGGCGGTCTT
CACGTTGGGCTCTCGCGGTTGAGTCACTGTTTGTCGCACCATCGAAAGCA
CAATGGTTAACAACGCAGCTTACCGTACCTTGTTTTACAGGAGAATACAC
TTATAGATCTCTGTGAGTTGATATTATACATTACGTGCGCGTTTTGGATA
TTGTATTGATTTTGGGGGACCAGGGTCTGAGAAATGTTGAGATTTATAAT
AACTTGATGTGTCACATGTCGGTTGCTCTTTTTATCCCACTCTAGAATTG
ACCCGCAGCCGACTCCGCCCTCGTTTAGGAATATGTGGACGAGGAAGGTG
GAGCGGGGCTGTGAAAGGAGTCTTTTCGTTTATTTTGAAGCTTGTAATAG
GTTCCTGCTTCTGTATACGCTCGTCCAGGAGGGAGTAACGAAGGAATACT
TCCACATACAATTATTAAAAGCTTTGTTGGATCCCAGTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1459:20259..24699+

>mRNA_H-paniculata_contig1459.2751.1 ID=mRNA_H-paniculata_contig1459.2751.1|Name=mRNA_H-paniculata_contig1459.2751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2154bp|location=Sequence derived from alignment at H-paniculata_contig1459:20259..24699+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCGCAACAGCGCGCGGCTGGAGGCCGGGCGGCGATAGATTCCGA
TGTTGCTGCTTTGCGACGGACGGCGGAACAGAGAGAAAAGATGGCGGCGC
AACAGCGCGCGGCTGGAGGCCGGGCGGCGATAGATTCCGATGTTGCTGCT
TTGCGACGGACGGCGGAACAGAGAGAAAAGGCTCGACAGCGCATGGGTTT
CTCTAGGAAACCCGTGGGCGGAACGGTCCCTGGCACAATTAAGGCTAGTG
GAGGCGGCGGTGGTCGGTCAACCATAAACACATGGGGAGATGTGCTCATG
CACGTCGTCTCTCTTCCTTCGTCGTCCTCGTCGTCCAGCAGAAGCAGCAG
TAGCAGTGGAAGCAACAAAAACATGAACAACAGGAGTTACACAGCTATCA
ATAATGGTGCCAGCAATAGCAACAGCCGCCACCGAGGGAACTATCAGCAC
GGCTGCAGCAATGGCATCGGTTGTGGACTAGAGGCAGGAAGCGAGGGGAC
TTTTTTACGGCGGGGGTTGTCCTCGTCGACCACGGCGCAGCAGCAGCAAC
AGGAGGAGCGAGAAGTGGTAGAGGGGGTATGTGAGCAACAACAGTGGAGA
GAGGGAGGAGCAAGCGTCGTCGGCGGGATGTATTTGCCTCCACGGGCTGC
TACGCATGCCAGCCGCGTGCCCACGGGAAATGGGAATGCAGAAGGATATT
GGGCGGCCATAGAACAGGAGGACGATCGGCGCCGAGCTTTGGGGCACTCT
GGACGAAGGTCTCTGTCTGGCTCGACAGCGCATGGGTTTCTCTAGGAAAC
CCGTGGGCGGAACGGTCCCTGGCACAATTAAGGCTAGTGGAGGCGGCGGT
GGTCGGTCAACCATAAACACATGGGGAGATGTGCTCATGCACGTCGTCTC
TCTTCCTTCGTCGTCCTCGTCGTCCAGCAGAAGCAGCAGTAGCAGTGGAA
GCAACAAAAACATGAACAACAGGAGTTACACAGCTATCAATAATGGTGCC
AGCAATAGCAACAGCCGCCACCGAGGGAACTATCAGCACGGCTGCAGCAA
TGGCATCGGTTGTGGACTAGAGGCAGGAAGCGAGGGGACTTTTTTACGGC
GGGGGTTGTCCTCGTCGACCACGGCGCAGCAGCAGCAACAGGAGGAGCGA
GAAGTGGTAGAGGGGGTATGTGAGCAACAACAGTGGAGAGAGGGAGGAGC
AAGCGTCGTCGGCGGGATGTATTTGCCTCCACGGGCTGCTACGCATGCCA
GCCGCGTGCCCACGGGAAATGGGAATGCAGAAGGATATTGGGCGGCCATA
GAACAGGAGGACGATCGGCGCCGAGCTTTGGGGCACTCTGGACGAAGGTC
TCTGTCTGTGGACTCAAGCCCCAGTTCTCAAGTCGCCGTTACGAGCCCAG
AAGCTCAGGGGGTAGCCTATCAGGATGGTATCGATGCTTCAGGCGGAGAG
CGTAGTTCCGCAGGTCAGAAGGGTGGCGGTGGCGCTGGGAGCGGTGGGGG
AAGAAGCGCGGGGCGTCCCGCCCCGCTCGGTACCACTACGCAGAATGGCG
CAAGAAACGTCGGGATGGGTTACGGGGAGAGTGTGAAGGGGTTCAAGAGT
GCGGTGGTGGTGGTGGCCGGGAGCGATGATGGCGATGGTTCGTCCAGCGC
GGAGGATTTGTCTTCGCCTGAAAGGGAGGAGAATAGTCCGCTTTTTGTTC
GACCTCTGCCTGTGCCTGAGGTAGTCTCGGGAGGCTACGCGGCGCCGCAG
GCCTAGTGGACTCAAGCCCCAGTTCTCAAGTCGCCGTTACGAGCCCAGAA
GCTCAGGGGGTAGCCTATCAGGATGGTATCGATGCTTCAGGCGGAGAGCG
TAGTTCCGCAGGTCAGAAGGGTGGCGGTGGCGCTGGGAGCGGTGGGGGAA
GAAGCGCGGGGCGTCCCGCCCCGCTCGGTACCACTACGCAGAATGGCGCA
AGAAACGTCGGGATGGGTTACGGGGAGAGTGTGAAGGGGTTCAAGAGTGC
GGTGGTGGTGGTGGCCGGGAGCGATGATGGCGATGGTTCGTCCAGCGCGG
AGGATTTGTCTTCGCCTGAAAGGGAGGAGAATAGTCCGCTTTTTGTTCGA
CCTCTGCCTGTGCCTGAGGTAGTCTCGGGAGGCTACGCGGCGCCGCAGGC
CTAG
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