mRNA_H-paniculata_contig14586.2747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14586.2747.1
Unique NamemRNA_H-paniculata_contig14586.2747.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 137 bits (344), Expect = 3.680e-31
Identity = 83/238 (34.87%), Postives = 121/238 (50.84%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRR-EKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWAPDGRSG----NSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRM 952
            HV +R + S     D ELE MD           +   +  P  F V +D   V  ++KSL+ LKQ+ R  N   + F+ G    RS  + C+Y  + EGG   +L+  YVDD++IA +   ++D  K ++S  F MKD+G  SR+LGI++ RDR  G +  S   Y+ +V+KR    E + V TP+ G  K+ A    S         Y   V S++Y   G RPDIAYA+   +R M
Sbjct:  930 HVSIRILMSAVVNQDLELEQMDVKTAFLHGDLDQELFMEQPEGFEVDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFM 1165          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS)

HSP 1 Score: 134 bits (336), Expect = 4.020e-30
Identity = 81/238 (34.03%), Postives = 127/238 (53.36%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRR-EKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWA-PDGRSGNSSE---YRGMVRSLLYTSTGARPDIAYAVHQAARRM 952
            H+ +R + S+  K D ELE MD           +   +  P  F V      V  ++KSL+ LKQ  R  N   + F++     RS  +PC+Y  ++ G E  I + +YVDD+++A +   +V++ K  +SR F MKDLG  SR+LGI++ R+R  GT+  S  GY+++V++R    E + V TP+    K+++  D      +E   Y   V S++Y   G RPDIAYA+   +R M
Sbjct:  928 HLSIRILMSLVVKEDLELEQMDVKTAFLHGELEEELYMEQPEGFVVDPKKDQVCLLKKSLYGLKQAPRQWNKKFNAFMMSQKFTRSGHDPCVYV-KEVGDEEFIYLLLYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYAIGLVSRFM 1164          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD)

HSP 1 Score: 132 bits (333), Expect = 9.860e-30
Identity = 79/238 (33.19%), Postives = 124/238 (52.10%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRRE-KVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIW----APDGRSGNSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRM 952
            H+ +R + S+   HD ELE MD           +   +  P  F V+     V  ++KSL+ LKQ  R  N   + FLV  G  RS ++ C+Y  ++ G E  + + +YVDD+++A +++ ++ + K  +S  F MKD+G  SR+LGI++ RDR   T+     GYI++VLKR    E + V TP+    K+     A +        Y   V S++Y   G RPD+AYA+   +R M
Sbjct:  927 HISIRVLMSVVVNHDLELEQMDVKTAFLHGNLEQELYMEQPEGFEVNPGKDQVCLLKKSLYGLKQAPRQWNKRFNSFLVSQGFIRSDSDLCVYI-KEVGPEDYVYLLLYVDDMLLAAKQKSEIQKLKDVLSSEFEMKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKVPYLSAVGSVMYAMVGTRPDVAYALGLVSRFM 1163          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A6D2LC14_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LC14_9BRAS)

HSP 1 Score: 131 bits (330), Expect = 2.420e-29
Identity = 80/246 (32.52%), Postives = 136/246 (55.28%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGMD-KNCLL--SYPPIFPVSRDIPFVRR--------VRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWAPDGR-----SG--NSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCR 967
            HV +R + S+    D ELE +D K   L  +   +  +S+   F+ +        ++KSL+DLKQ+ R  N   D+F+   G QRST++PC+Y ++    +  I + +YVDD+++A +   K+   K S+S  F MKDLG  +R+LG+++ RDR  G +  S   Y+++VL+    ++C+ V +P   + K+ +   +     SG  +S  Y   V SL+Y   G+RPD+A+A+   +R M +  R
Sbjct:  937 HVSIRIMLSVVVNFDLELEQLDVKTAFLHGTLDEVIYMSQPEGFIEKGNEDKVCLLKKSLYDLKQSPRQWNQRFDEFMKSQGFQRSTSDPCVY-TKGSCIDDMIYLLLYVDDMLVAAKDMNKIKVLKSSLSMTFEMKDLGSATRILGMDIIRDRKKGILKLSQERYLKKVLRTFNMEDCKAVVSPCNSQFKLKSLTQQELITESGLMDSVPYASAVGSLMYAMIGSRPDLAFAICLVSRFMANPGR 1181          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A816Q536_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816Q536_BRANA)

HSP 1 Score: 125 bits (314), Expect = 4.110e-29
Identity = 83/253 (32.81%), Postives = 126/253 (49.80%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGM-----------DKNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRREKVDE-FKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEG--KVKIWAPDGRSGN-----SSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988
            HV +R + S+    D+ELE M           D+  L+  P  F    D   V  ++KSL+ LKQ+ R  N   + F+  +  Q+S  + C+Y  +D   +  + + +YVDD++IA    KV +  K S+SR F MKDLG  SR+LG+++ RDR  G +  S   Y+ +VL+  G  E + V TP     K+K   P  R+       +  Y  +V SL+Y   G+RPD+ +AV    R M     E +   K
Sbjct:   68 HVSIRILLSIVVNLDYELEQMGVKTAFLNGELDERTLMEQPDGFVKKGDEDKVCLLKKSLYGLKQSPRQWNLKFNSFMQKLEFQKSKFDLCVYM-KDVNTKKAVYLLLYVDDMLIASGNPKVIQALKDSLSREFEMKDLGKASRILGMDIIRDREKGILVLSQQRYLGKVLRTFGMYEAKSVVTPTASHFKLKSLHPKERAEEFEYMKNIPYASVVGSLIYAMVGSRPDLGFAVGLVCRFMSHPSIEHWEAAK 319          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A6D2JMB2_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JMB2_9BRAS)

HSP 1 Score: 130 bits (327), Expect = 6.030e-29
Identity = 86/253 (33.99%), Postives = 126/253 (49.80%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIA-GRREKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEG--KVKIWAPDGRSGN-----SSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988
            HV +R + S    +D+ELE MD           +  L+  P  +    D   V  +RKSL+ LKQ+ R  N   D F+      RS  +PC+Y    +  E  + + +YVDD++IA G   ++   K S+SR+F MKDLG  SR+LG+++ RDR  GT+  S   YI +VLK     + +   TP+    K+K      R        +  Y   V SL+Y   G+RPD+AYAV   +R M +  RE +   K
Sbjct: 1026 HVSIRIMLSAVVNNDYELEQMDVKTAFLHGDLEERILMQQPEGYIKKGDENKVCLLRKSLYGLKQSPRQWNLKFDSFMKEEKFIRSNGDPCVYMKNVKTKEA-VYLLLYVDDILIASGSMAEIRLIKESLSRKFEMKDLGKASRILGMDIIRDREKGTLKLSQESYIEKVLKAFDMADAKSTTTPLATHFKLKSLTKAERKEEVVHMENKPYASAVGSLMYAMIGSRPDLAYAVGVISRFMSNPGREHWTAVK 1277          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7)

HSP 1 Score: 129 bits (325), Expect = 1.110e-28
Identity = 80/253 (31.62%), Postives = 123/253 (48.62%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGMDKNCLLSY-----------PPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRREK-VDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWA-------PDGRSGNSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988
            HV +R + S+ A +D +LE +D      Y           P  F        V  + KSL+ LKQ+ R  N   D F+   G +RS  +PC+Y    +     + + +YVDD++IA +  K +   K S+ R F MKDLG  SR+LG+++ RDR  GT+  S G Y+++VL+     E + V TP+  + K+ +        + R  N   Y   V SL+Y   G+RP + +AV   +R M    R  +   K
Sbjct:  914 HVSIRIMLSLVANYDLDLEQLDVKTAFLYGTLDEEIYMAQPEGFVEEGKEDQVCLLLKSLYGLKQSPRQWNRRFDSFMKQQGFERSAYDPCVYMKGSDSSHM-VYLLIYVDDMLIASKDSKEIKRIKDSLKREFEMKDLGAASRILGMDIIRDRKKGTLKLSQGKYLQKVLETFNMAESKAVVTPIGPQFKLKSLTQKEEHEEARFMNVIPYASAVGSLMYAMVGSRPGLCFAVGLISRYMSKPGRIHWEAVK 1165          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 129 bits (325), Expect = 1.110e-28
Identity = 86/256 (33.59%), Postives = 124/256 (48.44%), Query Frame = 2
Query:  296 LRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRREKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWAPDGRSGNSSE--------------YRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988
            +RT+ S+AA+HD+EL  MD           +   +  PP F        V R++K+L+ LKQ GR    TL   +  +G  R   +  +++ R+  GE+ I+VA  VDDL I G  + VD F   I +RF M DLG L  +LGIEV RDR   TI+ S   YI  ++ R   DE   +  P++       P    GN                 YR  V SL+Y + G RPDI +AV   ++ M++  R  ++  K
Sbjct: 1123 IRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQ-------PGSPLGNHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALK 1369          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: UPI00142E8FD0 (uncharacterized protein LOC103850617 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E8FD0)

HSP 1 Score: 128 bits (322), Expect = 2.620e-28
Identity = 76/253 (30.04%), Postives = 128/253 (50.59%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWA-------PDGRSGNSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988
            HV +R + S+   +D ELE +D           +   +S P  F    D   V  ++KSL+ LKQ+ R  N   D+F+   G  +S  +PC+YF + +  E  + + +YVDD+++A +  +K+ + K S+   F MKDLG  +R+LG+++ RDR NG +  S   Y+++VLK       + V TPV  + K+          +    +   Y   V SL+Y   G+RPD+ +A+   +R M    R  ++  +
Sbjct:  932 HVSIRLLLSVVVNYDMELEQLDVKTAFLHGTLDEEIYMSQPEGFIRKGDESKVCLLKKSLYGLKQSPRQWNQRFDEFMKRQGYTQSIHDPCVYF-KGKSLEEKVFLLLYVDDMLVASKDMKKIQKLKESLKSEFEMKDLGRATRILGMDIIRDRKNGVLKLSQEKYLKQVLKSFNMQGAKPVVTPVSSQHKLRKLTDAEIKEEANYMDKIPYASAVGSLMYAMIGSRPDLGFAICLISRYMSQPGRAHWDAVR 1183          
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A2K3N065_TRIPR (Copia LTR rider n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N065_TRIPR)

HSP 1 Score: 128 bits (321), Expect = 3.500e-28
Identity = 81/253 (32.02%), Postives = 126/253 (49.80%), Query Frame = 2
Query:  287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRR-EKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWAPDGRSG-------NSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988
            H  +R + +M A+ D ELE MD           +  L+  P  +       +V ++++SL+ LKQ+ R  N   D F+  I   RS  + C+YF R   G + +++ +YVDD++IA    E V   K  +++ F MKDLG  SR+LGI++ RDR    +  S   Y+R++L++ G    + V TP   + K+      S        NS  Y  +V SL+Y     RPDIAYAV   +R M +  +  +   K
Sbjct:  885 HRSIRMLLAMVAQFDLELEQMDVKTAFLYGDLDETILMRQPEGYVERGKEDYVCKLKRSLYGLKQSPRQWNRRFDKFMARISFIRSQFDHCVYF-RFRPGNSFVILLLYVDDILIASNNVEDVTRVKAELNKEFDMKDLGAASRILGIDIRRDRKKSKLCLSQEAYLRKILEKFGMSNSKPVVTPTNPQFKLSIDQCPSTDVERAYMNSIPYANIVGSLMYAMVCTRPDIAYAVSLVSRYMANPGKAHWQALK 1136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3F7G4_NOCCA3.680e-3134.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2J0E6_9BRAS4.020e-3034.03Uncharacterized protein n=3 Tax=Microthlaspi errat... [more]
UPI00142E19AD9.860e-3033.19uncharacterized protein LOC103874474 n=1 Tax=Brass... [more]
A0A6D2LC14_9BRAS2.420e-2932.52Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A816Q536_BRANA4.110e-2932.81(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
A0A6D2JMB2_9BRAS6.030e-2933.99Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI00142E31C71.110e-2831.62uncharacterized protein LOC103832254 n=1 Tax=Brass... [more]
A0A2G8RWY5_9APHY1.110e-2833.59Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
UPI00142E8FD02.620e-2830.04uncharacterized protein LOC103850617 isoform X1 n=... [more]
A0A2K3N065_TRIPR3.500e-2832.02Copia LTR rider n=1 Tax=Trifolium pratense TaxID=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14586contigH-paniculata_contig14586:4993..6366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue6.5e-14
Seed eggNOG ortholog67593.Physo141588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1259
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14586.2747.1prot_H-paniculata_contig14586.2747.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14586 4993..5328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.2776256-CDS-H-paniculata_contig14586:4992..53281622929160.2776256-CDS-H-paniculata_contig14586:4992..5328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14586 4993..5328 -
1691480754.3523622-CDS-H-paniculata_contig14586:4992..53281691480754.3523622-CDS-H-paniculata_contig14586:4992..5328Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14586 4993..5328 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.291443-UTR-H-paniculata_contig14586:5328..54141622929160.291443-UTR-H-paniculata_contig14586:5328..5414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14586 5329..5414 -
1691480754.3621442-UTR-H-paniculata_contig14586:5328..54141691480754.3621442-UTR-H-paniculata_contig14586:5328..5414Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14586 5329..5414 -
1622929160.306146-UTR-H-paniculata_contig14586:5495..59801622929160.306146-UTR-H-paniculata_contig14586:5495..5980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14586 5496..5980 -
1691480754.3737793-UTR-H-paniculata_contig14586:5495..59801691480754.3737793-UTR-H-paniculata_contig14586:5495..5980Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14586 5496..5980 -
1622929160.3197942-UTR-H-paniculata_contig14586:6014..63661622929160.3197942-UTR-H-paniculata_contig14586:6014..6366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14586 6015..6366 -
1691480754.3919628-UTR-H-paniculata_contig14586:6014..63661691480754.3919628-UTR-H-paniculata_contig14586:6014..6366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14586 6015..6366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14586.2747.1

>prot_H-paniculata_contig14586.2747.1 ID=prot_H-paniculata_contig14586.2747.1|Name=mRNA_H-paniculata_contig14586.2747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MRYTKQHVVWRTHVGKTSIYASIFRYLSTVPDLGITFDGKSNGHGLEGFV
NADWAEVIEDRKSATGYVFKLNGGAIIWCSRKQQLVTWSSTEVGYVAAGE
AGKEMVYLGDLL
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mRNA from alignment at H-paniculata_contig14586:4993..6366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14586.2747.1 ID=mRNA_H-paniculata_contig14586.2747.1|Name=mRNA_H-paniculata_contig14586.2747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig14586:4993..6366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAAGAGCCGAAATCTGCGGCAGAAGCACTGAAGAGCCCAGAGGCAGA TAAAAGCGCACGGCAATGGAGGAGAAATGGAGGACGTTGGTAAAAAATGG GATGTGGGAGAGCGAGGACCCGGGGAGGTTACCGGCAGGGCGGAAGGCGA TCCGTATCAAATGGATTTTCAAGCGAAAACTGAAGGAGGGCGGCAGCGTG GCACGCTACAAAGCGCGACTAGTGGCTCAAGGTTTTTCACAGGTGGGGGG TGAAGATTTCTTTGAAACCAGTGCCTCCGTAGTTCGCATGTCGACTTGCG TACTGTTTTCAGTATGGCCGCCAAACATGATTTCGAACTAGAAGGCATGG ATGTAGATGCGACGTATTTGAATGCCCCCGTAGAAGAAGAACTGTTTGTT AAGCTACCCCCCGATTTTTCCCGTCTCCCGAGATATACCGTTTGTGCGCC GCGTGCGTAAAAGCCTGCACGACCTCAAGCAGAATGGCCGAAACTAGAAT TACACTCTTGACGATTTTCTTGTTGGGATAGGACCCCAGCGTTCCACTAC CAACCCATGCTTGTACTTTTCTCGCGACGAAGGGGGAGAGACAAACATTC TCGTGGCCGTCTATGTTGACGACCTCGTCATCGCTGGACGTCGTGAGAAA GTAGACGAGTTCAAGCACAGCATAAGTCGGCGTTTCAGGATGAAAGACTT GGGCGTCCTCTCGCGTGTGTTGGGAATAGAAGTATGACGTGACCGCCCCA ATGGTACCATATCAAAATCCGACGGTGGCTACATCCGCGAGGTACTGAAA AGATGCGGTTTTGACGAGTGTCGAGGCGTGCCCACCCCTGTAGAGGGAAA AGTGAAGATTTGGGCACCCGAGTCGGCGGACAAGCCCCCCGAATCAAAAC CACTTGGGGCTGTACTGTCGGGCATGGGCGCAGGAGTACAAGAAAGCAGC AGTGGGAGAAGTGGTAATTCATCCGAATACAGAGGCATGGTACGATCGCT ACTGTACACCTCGACAGGAGCTAGACCTGATATAGCATATGCGGTACACC AAGCAGCACGTCGTATGGAGGACTCATGTCGGGAAGACTTCAATATATGC AAGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTACTTTCG ACGGTAAGAGTAATGGTCATGGTTTGGAAGGATTCGTTAATGCCGATTGG GCGGAAGTTATCGAGGATCGAAAGTCCGCAACAGGATACGTATTTAAGCT GAACGGCGGTGCGATAATTTGGTGCTCTAGGAAGCAACAGTTAGTCACGT GGTCCAGTACAGAGGTAGGGTACGTTGCTGCAGGAGAAGCGGGAAAGGAG ATGGTATATCTTGGAGATTTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig14586:4993..6366-

>mRNA_H-paniculata_contig14586.2747.1 ID=mRNA_H-paniculata_contig14586.2747.1|Name=mRNA_H-paniculata_contig14586.2747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig14586:4993..6366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTACACCAAGCAGCACGTCGTATGGAGGACTCATGTCGGGAAGAC
TTCAATATATGCAAGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCG
GCATTACTTTCGACGGTAAGAGTAATGGTCATGGTTTGGAAGGATTCGTT
AATGCCGATTGGGCGGAAGTTATCGAGGATCGAAAGTCCGCAACAGGATA
CGTATTTAAGCTGAACGGCGGTGCGATAATTTGGTGCTCTAGGAAGCAAC
AGTTAGTCACGTGGTCCAGTACAGAGGTAGGGTACGTTGCTGCAGGAGAA
GCGGGAAAGGAGATGGTATATCTTGGAGATTTACTAATGCGGTACACCAA
GCAGCACGTCGTATGGAGGACTCATGTCGGGAAGACTTCAATATATGCAA
GCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTACTTTCGAC
GGTAAGAGTAATGGTCATGGTTTGGAAGGATTCGTTAATGCCGATTGGGC
GGAAGTTATCGAGGATCGAAAGTCCGCAACAGGATACGTATTTAAGCTGA
ACGGCGGTGCGATAATTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGG
TCCAGTACAGAGGTAGGGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGAT
GGTATATCTTGGAGATTTACTA
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