mRNA_H-paniculata_contig14586.2747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 137 bits (344), Expect = 3.680e-31 Identity = 83/238 (34.87%), Postives = 121/238 (50.84%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRR-EKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWAPDGRSG----NSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRM 952 HV +R + S D ELE MD + + P F V +D V ++KSL+ LKQ+ R N + F+ G RS + C+Y + EGG +L+ YVDD++IA + ++D K ++S F MKD+G SR+LGI++ RDR G + S Y+ +V+KR E + V TP+ G K+ A S Y V S++Y G RPDIAYA+ +R M Sbjct: 930 HVSIRILMSAVVNQDLELEQMDVKTAFLHGDLDQELFMEQPEGFEVDKDKDQVCLLKKSLYGLKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFM 1165
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS) HSP 1 Score: 134 bits (336), Expect = 4.020e-30 Identity = 81/238 (34.03%), Postives = 127/238 (53.36%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRR-EKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWA-PDGRSGNSSE---YRGMVRSLLYTSTGARPDIAYAVHQAARRM 952 H+ +R + S+ K D ELE MD + + P F V V ++KSL+ LKQ R N + F++ RS +PC+Y ++ G E I + +YVDD+++A + +V++ K +SR F MKDLG SR+LGI++ R+R GT+ S GY+++V++R E + V TP+ K+++ D +E Y V S++Y G RPDIAYA+ +R M Sbjct: 928 HLSIRILMSLVVKEDLELEQMDVKTAFLHGELEEELYMEQPEGFVVDPKKDQVCLLKKSLYGLKQAPRQWNKKFNAFMMSQKFTRSGHDPCVYV-KEVGDEEFIYLLLYVDDMLLAAKSITEVNKLKAELSREFEMKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYAIGLVSRFM 1164
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD) HSP 1 Score: 132 bits (333), Expect = 9.860e-30 Identity = 79/238 (33.19%), Postives = 124/238 (52.10%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRRE-KVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIW----APDGRSGNSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRM 952 H+ +R + S+ HD ELE MD + + P F V+ V ++KSL+ LKQ R N + FLV G RS ++ C+Y ++ G E + + +YVDD+++A +++ ++ + K +S F MKD+G SR+LGI++ RDR T+ GYI++VLKR E + V TP+ K+ A + Y V S++Y G RPD+AYA+ +R M Sbjct: 927 HISIRVLMSVVVNHDLELEQMDVKTAFLHGNLEQELYMEQPEGFEVNPGKDQVCLLKKSLYGLKQAPRQWNKRFNSFLVSQGFIRSDSDLCVYI-KEVGPEDYVYLLLYVDDMLLAAKQKSEIQKLKDVLSSEFEMKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKVPYLSAVGSVMYAMVGTRPDVAYALGLVSRFM 1163
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A6D2LC14_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LC14_9BRAS) HSP 1 Score: 131 bits (330), Expect = 2.420e-29 Identity = 80/246 (32.52%), Postives = 136/246 (55.28%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGMD-KNCLL--SYPPIFPVSRDIPFVRR--------VRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWAPDGR-----SG--NSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCR 967 HV +R + S+ D ELE +D K L + + +S+ F+ + ++KSL+DLKQ+ R N D+F+ G QRST++PC+Y ++ + I + +YVDD+++A + K+ K S+S F MKDLG +R+LG+++ RDR G + S Y+++VL+ ++C+ V +P + K+ + + SG +S Y V SL+Y G+RPD+A+A+ +R M + R Sbjct: 937 HVSIRIMLSVVVNFDLELEQLDVKTAFLHGTLDEVIYMSQPEGFIEKGNEDKVCLLKKSLYDLKQSPRQWNQRFDEFMKSQGFQRSTSDPCVY-TKGSCIDDMIYLLLYVDDMLVAAKDMNKIKVLKSSLSMTFEMKDLGSATRILGMDIIRDRKKGILKLSQERYLKKVLRTFNMEDCKAVVSPCNSQFKLKSLTQQELITESGLMDSVPYASAVGSLMYAMIGSRPDLAFAICLVSRFMANPGR 1181
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A816Q536_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A816Q536_BRANA) HSP 1 Score: 125 bits (314), Expect = 4.110e-29 Identity = 83/253 (32.81%), Postives = 126/253 (49.80%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGM-----------DKNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRREKVDE-FKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEG--KVKIWAPDGRSGN-----SSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988 HV +R + S+ D+ELE M D+ L+ P F D V ++KSL+ LKQ+ R N + F+ + Q+S + C+Y +D + + + +YVDD++IA KV + K S+SR F MKDLG SR+LG+++ RDR G + S Y+ +VL+ G E + V TP K+K P R+ + Y +V SL+Y G+RPD+ +AV R M E + K Sbjct: 68 HVSIRILLSIVVNLDYELEQMGVKTAFLNGELDERTLMEQPDGFVKKGDEDKVCLLKKSLYGLKQSPRQWNLKFNSFMQKLEFQKSKFDLCVYM-KDVNTKKAVYLLLYVDDMLIASGNPKVIQALKDSLSREFEMKDLGKASRILGMDIIRDREKGILVLSQQRYLGKVLRTFGMYEAKSVVTPTASHFKLKSLHPKERAEEFEYMKNIPYASVVGSLIYAMVGSRPDLGFAVGLVCRFMSHPSIEHWEAAK 319
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A6D2JMB2_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JMB2_9BRAS) HSP 1 Score: 130 bits (327), Expect = 6.030e-29 Identity = 86/253 (33.99%), Postives = 126/253 (49.80%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIA-GRREKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEG--KVKIWAPDGRSGN-----SSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988 HV +R + S +D+ELE MD + L+ P + D V +RKSL+ LKQ+ R N D F+ RS +PC+Y + E + + +YVDD++IA G ++ K S+SR+F MKDLG SR+LG+++ RDR GT+ S YI +VLK + + TP+ K+K R + Y V SL+Y G+RPD+AYAV +R M + RE + K Sbjct: 1026 HVSIRIMLSAVVNNDYELEQMDVKTAFLHGDLEERILMQQPEGYIKKGDENKVCLLRKSLYGLKQSPRQWNLKFDSFMKEEKFIRSNGDPCVYMKNVKTKEA-VYLLLYVDDILIASGSMAEIRLIKESLSRKFEMKDLGKASRILGMDIIRDREKGTLKLSQESYIEKVLKAFDMADAKSTTTPLATHFKLKSLTKAERKEEVVHMENKPYASAVGSLMYAMIGSRPDLAYAVGVISRFMSNPGREHWTAVK 1277
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7) HSP 1 Score: 129 bits (325), Expect = 1.110e-28 Identity = 80/253 (31.62%), Postives = 123/253 (48.62%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGMDKNCLLSY-----------PPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRREK-VDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWA-------PDGRSGNSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988 HV +R + S+ A +D +LE +D Y P F V + KSL+ LKQ+ R N D F+ G +RS +PC+Y + + + +YVDD++IA + K + K S+ R F MKDLG SR+LG+++ RDR GT+ S G Y+++VL+ E + V TP+ + K+ + + R N Y V SL+Y G+RP + +AV +R M R + K Sbjct: 914 HVSIRIMLSLVANYDLDLEQLDVKTAFLYGTLDEEIYMAQPEGFVEEGKEDQVCLLLKSLYGLKQSPRQWNRRFDSFMKQQGFERSAYDPCVYMKGSDSSHM-VYLLIYVDDMLIASKDSKEIKRIKDSLKREFEMKDLGAASRILGMDIIRDRKKGTLKLSQGKYLQKVLETFNMAESKAVVTPIGPQFKLKSLTQKEEHEEARFMNVIPYASAVGSLMYAMVGSRPGLCFAVGLISRYMSKPGRIHWEAVK 1165
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY) HSP 1 Score: 129 bits (325), Expect = 1.110e-28 Identity = 86/256 (33.59%), Postives = 124/256 (48.44%), Query Frame = 2 Query: 296 LRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRREKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWAPDGRSGNSSE--------------YRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988 +RT+ S+AA+HD+EL MD + + PP F V R++K+L+ LKQ GR TL + +G R + +++ R+ GE+ I+VA VDDL I G + VD F I +RF M DLG L +LGIEV RDR TI+ S YI ++ R DE + P++ P GN YR V SL+Y + G RPDI +AV ++ M++ R ++ K Sbjct: 1123 IRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQ-------PGSPLGNHQSPSTPRQFEDMRDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALK 1369
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: UPI00142E8FD0 (uncharacterized protein LOC103850617 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E8FD0) HSP 1 Score: 128 bits (322), Expect = 2.620e-28 Identity = 76/253 (30.04%), Postives = 128/253 (50.59%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGR-REKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWA-------PDGRSGNSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988 HV +R + S+ +D ELE +D + +S P F D V ++KSL+ LKQ+ R N D+F+ G +S +PC+YF + + E + + +YVDD+++A + +K+ + K S+ F MKDLG +R+LG+++ RDR NG + S Y+++VLK + V TPV + K+ + + Y V SL+Y G+RPD+ +A+ +R M R ++ + Sbjct: 932 HVSIRLLLSVVVNYDMELEQLDVKTAFLHGTLDEEIYMSQPEGFIRKGDESKVCLLKKSLYGLKQSPRQWNQRFDEFMKRQGYTQSIHDPCVYF-KGKSLEEKVFLLLYVDDMLVASKDMKKIQKLKESLKSEFEMKDLGRATRILGMDIIRDRKNGVLKLSQEKYLKQVLKSFNMQGAKPVVTPVSSQHKLRKLTDAEIKEEANYMDKIPYASAVGSLMYAMIGSRPDLGFAICLISRYMSQPGRAHWDAVR 1183
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Match: A0A2K3N065_TRIPR (Copia LTR rider n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N065_TRIPR) HSP 1 Score: 128 bits (321), Expect = 3.500e-28 Identity = 81/253 (32.02%), Postives = 126/253 (49.80%), Query Frame = 2 Query: 287 HVDLRTVFSMAAKHDFELEGMD-----------KNCLLSYPPIFPVSRDIPFVRRVRKSLHDLKQNGRN*NYTLDDFLVGIGPQRSTTNPCLYFSRDEGGETNILVAVYVDDLVIAGRR-EKVDEFKHSISRRFRMKDLGVLSRVLGIEV*RDRPNGTISKSDGGYIREVLKRCGFDECRGVPTPVEGKVKIWAPDGRSG-------NSSEYRGMVRSLLYTSTGARPDIAYAVHQAARRMEDSCREDFNICK 988 H +R + +M A+ D ELE MD + L+ P + +V ++++SL+ LKQ+ R N D F+ I RS + C+YF R G + +++ +YVDD++IA E V K +++ F MKDLG SR+LGI++ RDR + S Y+R++L++ G + V TP + K+ S NS Y +V SL+Y RPDIAYAV +R M + + + K Sbjct: 885 HRSIRMLLAMVAQFDLELEQMDVKTAFLYGDLDETILMRQPEGYVERGKEDYVCKLKRSLYGLKQSPRQWNRRFDKFMARISFIRSQFDHCVYF-RFRPGNSFVILLLYVDDILIASNNVEDVTRVKAELNKEFDMKDLGAASRILGIDIRRDRKKSKLCLSQEAYLRKILEKFGMSNSKPVVTPTNPQFKLSIDQCPSTDVERAYMNSIPYANIVGSLMYAMVCTRPDIAYAVSLVSRYMANPGKAHWQALK 1136 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14586.2747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14586.2747.1 >prot_H-paniculata_contig14586.2747.1 ID=prot_H-paniculata_contig14586.2747.1|Name=mRNA_H-paniculata_contig14586.2747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp MRYTKQHVVWRTHVGKTSIYASIFRYLSTVPDLGITFDGKSNGHGLEGFVback to top mRNA from alignment at H-paniculata_contig14586:4993..6366- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14586.2747.1 ID=mRNA_H-paniculata_contig14586.2747.1|Name=mRNA_H-paniculata_contig14586.2747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig14586:4993..6366- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14586:4993..6366- >mRNA_H-paniculata_contig14586.2747.1 ID=mRNA_H-paniculata_contig14586.2747.1|Name=mRNA_H-paniculata_contig14586.2747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig14586:4993..6366- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |