mRNA_H-paniculata_contig14583.2745.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14583.2745.1
Unique NamemRNA_H-paniculata_contig14583.2745.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A812YES5_SYMMI (alpha-1,2-Mannosidase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YES5_SYMMI)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-14
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMDLSKYVFNTEAHPTRIF 120
            MESFFLAET+KYLYL QDPD+++DL KYVFNTEAHP +IF
Sbjct:  170 MESFFLAETMKYLYLAQDPDNEIDLMKYVFNTEAHPMKIF 209
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BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A7S2AT56_9DINO (alpha-1,2-Mannosidase n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2AT56_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 3.250e-14
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMDLSKYVFNTEAHPTRIFT 123
            MESFFLAET+KYL+L+QDPDHK+ L  YVFNTE HP  +F+
Sbjct:   87 MESFFLAETMKYLFLLQDPDHKVKLDSYVFNTEGHPLSVFS 127
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BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A7S2A036_TRICV (alpha-1,2-Mannosidase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A036_TRICV)

HSP 1 Score: 69.3 bits (168), Expect = 3.470e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMD-LSKYVFNTEAHPTRIFT 123
            MESFFLAETLKYLYL+QDPD ++D L K+VFNTEAHP RIF+
Sbjct:   61 MESFFLAETLKYLYLLQDPDTQIDILGKHVFNTEAHPLRIFS 102
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BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A7R9VYC4_9STRA (alpha-1,2-Mannosidase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VYC4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.610e-13
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMD-LSKYVFNTEAHPTRIF 120
            MESFFLAETLKYLYL+QDPD ++D L+K+VFNTEAHP R F
Sbjct:   71 MESFFLAETLKYLYLLQDPDSEIDILNKHVFNTEAHPLRRF 111
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BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A7S3XK61_HETAK (alpha-1,2-Mannosidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK61_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 3.790e-13
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMDLSKYVFNTEAHPTRIF 120
            MESFFLAET KYLYLIQDPD  +DL +YVFNTEAHP ++F
Sbjct:  577 MESFFLAETFKYLYLIQDPDQPIDLYEYVFNTEAHPMKVF 616
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BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A7S2WQE7_9STRA (alpha-1,2-Mannosidase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WQE7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.280e-13
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMDLSKYVFNTEAHPTRIF 120
            MESFF+AETLKYLYL+ DPD ++DL KYVFNTEAHP +I+
Sbjct:  287 MESFFMAETLKYLYLLMDPDSEVDLEKYVFNTEAHPLQIW 326
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BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A7S0AP19_9STRA (alpha-1,2-Mannosidase n=2 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AP19_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.170e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMD-LSKYVFNTEAHPTRIF 120
            MESFFLAET+KYLYL+QDPD ++D L ++VFNTEAHPTR F
Sbjct:  140 MESFFLAETIKYLYLLQDPDTEVDVLKRHVFNTEAHPTRTF 180
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BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A7S1Y3Z3_9STRA (alpha-1,2-Mannosidase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y3Z3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.140e-12
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMD-LSKYVFNTEAHPTRIF 120
            MESFFLAETLKYLYL QDPD ++D L+K+VFNTEAHP RIF
Sbjct:  304 MESFFLAETLKYLYLAQDPDTEVDILNKHVFNTEAHPVRIF 344
[Close]
BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A5A8CLU8_CAFRO (alpha-1,2-Mannosidase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLU8_CAFRO)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMDLSKYVFNTEAHPTRIF 120
            MESFFLAET+KYLY++Q PDH + L +YVFNTEAHP R F
Sbjct: 1315 MESFFLAETMKYLYMLQSPDHPISLERYVFNTEAHPMRRF 1354
[Close]
BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Match: A0A5A8EAJ7_CAFRO (alpha-1,2-Mannosidase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EAJ7_CAFRO)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 MESFFLAETLKYLYLIQDPDHKMDLSKYVFNTEAHPTRIF 120
            MESFFLAET+KYLY++Q PDH + L +YVFNTEAHP R F
Sbjct:  925 MESFFLAETMKYLYMLQSPDHPISLERYVFNTEAHPMRRF 964
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14583.2745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812YES5_SYMMI1.230e-1480.00alpha-1,2-Mannosidase n=1 Tax=Symbiodinium microad... [more]
A0A7S2AT56_9DINO3.250e-1470.73alpha-1,2-Mannosidase n=1 Tax=Alexandrium anderson... [more]
A0A7S2A036_TRICV3.470e-1478.57alpha-1,2-Mannosidase n=1 Tax=Trieres chinensis Ta... [more]
A0A7R9VYC4_9STRA3.610e-1378.05alpha-1,2-Mannosidase n=1 Tax=Pseudictyota dubia T... [more]
A0A7S3XK61_HETAK3.790e-1377.50alpha-1,2-Mannosidase n=1 Tax=Heterosigma akashiwo... [more]
A0A7S2WQE7_9STRA7.280e-1375.00alpha-1,2-Mannosidase n=1 Tax=Eucampia antarctica ... [more]
A0A7S0AP19_9STRA1.170e-1275.61alpha-1,2-Mannosidase n=2 Tax=Minutocellus polymor... [more]
A0A7S1Y3Z3_9STRA2.140e-1280.49alpha-1,2-Mannosidase n=1 Tax=Grammatophora oceani... [more]
A0A5A8CLU8_CAFRO2.460e-1272.50alpha-1,2-Mannosidase n=1 Tax=Cafeteria roenbergen... [more]
A0A5A8EAJ7_CAFRO2.460e-1272.50alpha-1,2-Mannosidase n=4 Tax=Cafeteria roenbergen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14583contigH-paniculata_contig14583:4740..4874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue4.3e-09
Seed eggNOG ortholog44056.XP_009035587.1
Preferred nameMAN1A2
KEGG koko:K01230,ko:K03595
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009295,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010467,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016070,GO:0016072,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0022613,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042254,GO:0042493,GO:0042644,GO:0042646,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0071840,GO:0072347,GO:0090304,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
EggNOG free text desc.GTP binding
EggNOG OGsCOG1159@1,KOG1423@2759,KOG2204@1,KOG2204@2759
EC3.2.1.113
COG Functional cat.L
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03029,ko04131
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.1545408-CDS-H-paniculata_contig14583:4739..48741622929160.1545408-CDS-H-paniculata_contig14583:4739..4874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14583 4740..4874 +
1691480754.3023665-CDS-H-paniculata_contig14583:4739..48741691480754.3023665-CDS-H-paniculata_contig14583:4739..4874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14583 4740..4874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14583.2745.1prot_H-paniculata_contig14583.2745.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14583 4740..4874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14583.2745.1

>prot_H-paniculata_contig14583.2745.1 ID=prot_H-paniculata_contig14583.2745.1|Name=mRNA_H-paniculata_contig14583.2745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MESFFLAETLKYLYLIQDPDHKMDLSKYVFNTEAHPTRIFTAKE*
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mRNA from alignment at H-paniculata_contig14583:4740..4874+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14583.2745.1 ID=mRNA_H-paniculata_contig14583.2745.1|Name=mRNA_H-paniculata_contig14583.2745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig14583:4740..4874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATCATTCTTTTTAGCGGAGACGCTCAAGTACCTCTACCTCATACA
GGACCCGGACCATAAGATGGATCTTTCCAAATACGTCTTCAACACGGAGG
CGCATCCTACGCGGATCTTCACAGCAAAGGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14583:4740..4874+

>mRNA_H-paniculata_contig14583.2745.1 ID=mRNA_H-paniculata_contig14583.2745.1|Name=mRNA_H-paniculata_contig14583.2745.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig14583:4740..4874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATCATTCTTTTTAGCGGAGACGCTCAAGTACCTCTACCTCATACA
GGACCCGGACCATAAGATGGATCTTTCCAAATACGTCTTCAACACGGAGG
CGCATCCTACGCGGATCTTCACAGCAAAGGAGTAGATGGAATCATTCTTT
TTAGCGGAGACGCTCAAGTACCTCTACCTCATACAGGACCCGGACCATAA
GATGGATCTTTCCAAATACGTCTTCAACACGGAGGCGCATCCTACGCGGA
TCTTCACAGCAAAGGAGTAG
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