mRNA_H-paniculata_contig14581.2744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14581.2744.1
Unique NamemRNA_H-paniculata_contig14581.2744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14581.2744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14581contigH-paniculata_contig14581:4161..5135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.0945027-CDS-H-paniculata_contig14581:4162..45331622929160.0945027-CDS-H-paniculata_contig14581:4162..4533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14581 4163..4533 -
1691480754.2849977-CDS-H-paniculata_contig14581:4162..45331691480754.2849977-CDS-H-paniculata_contig14581:4162..4533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14581 4163..4533 -
1622929160.1138046-CDS-H-paniculata_contig14581:5095..51351622929160.1138046-CDS-H-paniculata_contig14581:5095..5135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14581 5096..5135 -
1691480754.293293-CDS-H-paniculata_contig14581:5095..51351691480754.293293-CDS-H-paniculata_contig14581:5095..5135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14581 5096..5135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14581.2744.1prot_H-paniculata_contig14581.2744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14581 4163..5135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14581.2744.1

>prot_H-paniculata_contig14581.2744.1 ID=prot_H-paniculata_contig14581.2744.1|Name=mRNA_H-paniculata_contig14581.2744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
RGEILLNFDDDASGRSHGGRSSGSHGGGNKSFSSSSQHRLHRHHHHHQAG
LRTGHSSNNLSGSGSSSSNGGGGGGSGRRNSRSRGDREYSSLRGGGSKGT
PARRGNHRSVRSDSAAATAVATAATTNGGGGKAVAPA
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mRNA from alignment at H-paniculata_contig14581:4161..5135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14581.2744.1 ID=mRNA_H-paniculata_contig14581.2744.1|Name=mRNA_H-paniculata_contig14581.2744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at H-paniculata_contig14581:4161..5135- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGAGAAATACTTTTGAATTTTGATGATGATGCCAGCGGTGAGTGAGC
GAAGGAGATGCGGTTTTCAGGAGCAGGCAGGCGGGTCGGTAGTAAGGGGG
GAGGGGGGATCCATTTCAGTAACTAAAATTCTCATTGGTAAATTAACTCT
GACTGGAACTCTATAGCTCATGTAATAACTCTATTATACCCCCATGTTGA
GGTAGGTTATGTAACTATGACAGCTGCATTTTATTCTGCATTTTATTCTG
CAGTTGTATACAGTTATCAGCAAATATTCAATCAAGAGAGAGGAGGTGCG
TGGATAATGACATTGGAATGTAATTTTGAGAAGAAAAAAGAAAATGACGT
TTGTGACGAACACGAATTGGAGCAGGAATATTGAGAACATTCGCGACCAA
ATTTTAAAAGAAAAGTATTCGCCTACAATGGAGGTTCAGAAATTGCGGGA
TGAATAAATTGATAACTGATAATGCCACATACACTTGAAAAAGTTGTGAC
CCATCCCCTATTTGCTGTTCCATGTTTGCACTACTCCCGGTGGGCCTCGC
CTCGCCTCGCCTCGCCTCGCCTCGCCTCATGGTACTCCCGTTCTTTTTAC
AGGACGCAGCCATGGCGGCAGATCAAGCGGCAGCCATGGCGGCGGCAACA
AGTCCTTTTCCTCCTCTTCTCAGCATCGCCTCCATCGCCATCACCACCAT
CACCAAGCTGGTCTCCGCACTGGCCACAGCAGCAACAACCTCAGCGGCAG
CGGCAGCAGTAGCAGTAACGGCGGCGGTGGTGGTGGCAGCGGGCGACGCA
ATAGTCGTAGCAGGGGTGACCGAGAGTATTCGTCGTTGAGGGGGGGCGGA
AGCAAGGGCACTCCCGCTCGGCGAGGTAACCATCGATCTGTACGTTCTGA
TTCTGCTGCCGCTACGGCTGTGGCTACGGCCGCTACTACTAACGGTGGTG
GTGGAAAAGCTGTCGCTCCTGCTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14581:4161..5135-

>mRNA_H-paniculata_contig14581.2744.1 ID=mRNA_H-paniculata_contig14581.2744.1|Name=mRNA_H-paniculata_contig14581.2744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig14581:4161..5135- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGAGAAATACTTTTGAATTTTGATGATGATGCCAGCGCGAGGAGAAA
TACTTTTGAATTTTGATGATGATGCCAGCGGACGCAGCCATGGCGGCAGA
TCAAGCGGCAGCCATGGCGGCGGCAACAAGTCCTTTTCCTCCTCTTCTCA
GCATCGCCTCCATCGCCATCACCACCATCACCAAGCTGGTCTCCGCACTG
GCCACAGCAGCAACAACCTCAGCGGCAGCGGCAGCAGTAGCAGTAACGGC
GGCGGTGGTGGTGGCAGCGGGCGACGCAATAGTCGTAGCAGGGGTGACCG
AGAGTATTCGTCGTTGAGGGGGGGCGGAAGCAAGGGCACTCCCGCTCGGC
GAGGTAACCATCGATCTGTACGTTCTGATTCTGCTGCCGCTACGGCTGTG
GCTACGGCCGCTACTACTAACGGTGGTGGTGGAAAAGCTGTCGCTCCTGC
TGACGCAGCCATGGCGGCAGATCAAGCGGCAGCCATGGCGGCGGCAACAA
GTCCTTTTCCTCCTCTTCTCAGCATCGCCTCCATCGCCATCACCACCATC
ACCAAGCTGGTCTCCGCACTGGCCACAGCAGCAACAACCTCAGCGGCAGC
GGCAGCAGTAGCAGTAACGGCGGCGGTGGTGGTGGCAGCGGGCGACGCAA
TAGTCGTAGCAGGGGTGACCGAGAGTATTCGTCGTTGAGGGGGGGCGGAA
GCAAGGGCACTCCCGCTCGGCGAGGTAACCATCGATCTGTACGTTCTGAT
TCTGCTGCCGCTACGGCTGTGGCTACGGCCGCTACTACTAACGGTGGTGG
TGGAAAAGCTGTCGCTCCTGCT
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