mRNA_H-paniculata_contig14581.2743.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14581.2743.1
Unique NamemRNA_H-paniculata_contig14581.2743.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14581.2743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14581contigH-paniculata_contig14581:580..3349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929160.038086-CDS-H-paniculata_contig14581:581..7291622929160.038086-CDS-H-paniculata_contig14581:581..729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14581 582..729 -
1691480754.2628913-CDS-H-paniculata_contig14581:581..7291691480754.2628913-CDS-H-paniculata_contig14581:581..729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14581 582..729 -
1622929160.0497491-CDS-H-paniculata_contig14581:3164..33491622929160.0497491-CDS-H-paniculata_contig14581:3164..3349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14581 3165..3349 -
1691480754.274946-CDS-H-paniculata_contig14581:3164..33491691480754.274946-CDS-H-paniculata_contig14581:3164..3349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14581 3165..3349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14581.2743.1prot_H-paniculata_contig14581.2743.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14581 582..3349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14581.2743.1

>prot_H-paniculata_contig14581.2743.1 ID=prot_H-paniculata_contig14581.2743.1|Name=mRNA_H-paniculata_contig14581.2743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
VSQARDQARRVLLKHLDGSYRGGADGLPQEQEQRQRWHIKKAYSMSEGTF
SWPVDEEVDEQRWSQRRRPRPASASLDAVKGRLMAASAAAAVAAANGSGV
AGKRGVEAPKA
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mRNA from alignment at H-paniculata_contig14581:580..3349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14581.2743.1 ID=mRNA_H-paniculata_contig14581.2743.1|Name=mRNA_H-paniculata_contig14581.2743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2770bp|location=Sequence derived from alignment at H-paniculata_contig14581:580..3349- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCTCAGGCCCGTGATCAGGCGCGGCGCGTGTTGTTGAAACATTTGGA
CGGAAGCTATCGGGGAGGTGCCGACGGTTTGCCGCAGGAGCAGGAGCAGA
GACAGAGATGGCACATAAAAAAGGCGTACAGCATGAGCGAGGGTACCTTC
TCTTGGCCGGTCGACGAGGAAGTGGACGAACAAAGGTACATTACAATTAC
TGTAGTGTAGGGGGGATGAATCTCGAAAGGTACACTAAAATAACCCGTTT
GTCCCACAAGTCTGAGACTTTAAACTGCAGCACTTCGGGGATGTTTTACA
TGAAAAAAAACTAAATTTTCAAAGGAATTCTATAGTGAAATAATCTATTC
TGAAATAGTTCCGATAGACTGGAACACAGAATGGGGCTTATTTTTCCCAT
TTTTTAATGGTCCTGCTCCAGCGTCGAGGCGCCAACGAACCAAGTAAGTA
TCCAGCAGATCAACTCCAGTAATCTCACGCTGTCTATCGACCAGCTTTCC
GCCAAGCTCGCCGAAACGGGCCTCGTAGTCGCCAGCTCAAAGCTTCATCG
CTGGCTTGAAGTCATGGGCGCAATGGGGGTTCAGCCTTTGGTTTTCTCAC
AGGTGCAGGGTGGACTTGATCCTCGACCAGGTCTTCCGTAATCGCAAAAT
TTACAGGACTGTCTCAACACCATTCGCATCGACGAGGCGTGGTTCTATCT
CATCGCGATCGATATATAGTGCGTGCGCATGTTCCCGGGAGCACGAAAAA
GTGGGCCTGAAGAAGGTGAAGCACAAGAGTCACCTCCGTAGTTTCGCATT
CGAATCCTTCGTCATGGTCCAAATGATGGGATCTGTTAGGTTTGCGTCAC
GAAGGAGGCGCAAGGGGCTACAGCGCGACACACGAAGCGCGAGAAGTACG
AGGTCGATGTCACTGTCGACGCCGAGTGGTACCTGGAGTGGTGCACGGAG
AAGCTATTGCCAGCAATCAAGGCAAAAATGCCGTGACTGGAATCGGGGCG
GGAGGGATGATTCCAGTAGGACGGCGTGACCCCGCATATGGGCATGGGCC
CGGTCCAGAAGCCGAACGCCAGCCGAGATGGAGGAGGGATGCAACATGAT
GGTCGTGACGCAGTCGGCGCAGTCGGCGTATCTCGACATGAACTTTTTTT
TTTTTTTTTTCGCCGATGAAGAGCAGAGTTTAGGCGGAGCGTTACGGCTC
TTTAGCAGGGTTGATAAACTCGCAGAGGGGGGGTCTTTAGAGTGCTTCTT
GCGTACGACGTAGACATGCTCGAGAGAGTGCGGCAGAGTTTGTCTAAGAG
GTACAATTAGGCGTTGAAAGCGCTGGGGAGGGACAATTTCGAGGTAGAGC
ACACCGAGACCAAAAATAGCAGCGGGAGGGCGGGTTGGCTAAATCAGACC
AAGTAGACTGAGCGGCTCGCCTCCGCGGCGGCCCTGGATTAGTGGGTTGA
CGGTGTCGAATAAAGACCAGATATGTTTTTGAATGTAATATATTCCAAAG
AGCTGCAACATAATGACCCAGGCTTCTGGGACAGAGGGGTGAGCGTGTAC
ACAACTAACATCTGGGGTAAGCTGCATTACTTGAATACCTGCCTCTTGTT
GTTGATTACGTTTTTGCTGATGAGTGTCACCGCGCGTGCAATGGCGTTAG
TTAGAATAGGAGGGTTGATGTACGAAATATATATCTATTTTTTAGGGCTT
CAGCCATTCATGTGAAAGCTATTTCATGATTTACCTACAGTACAGTACAG
TACAGTACAGTACACATGCTAGTGGCAACAAAGATACTCCGTCGTGAATG
TTGCCGTAGCCCATGTTGTGTGTGGTCGTAGAGGTGCGTGAAATTCTGGT
ACTTGGTCATGATGAAGTCCAAATGTACCCCTATCCCCCCCCCTCCCCTC
CCCTCCCCTCGCCGGGATTACGAAAAAAAAGGCGAGTGTAGTTCTAGGAG
ATCGAACTTGGCCTGAGTACGCGAATATTCAGGTAGATAAGGCAGGTAAA
ACATTCATTCCCCGGACAAACGCGAATGCTTGCAAATAGTTTTTCACAAA
AAAAAGAAAAGTATTCGCTCCAGTTTCAGAATGAGCTCGAGTGTTCTACG
TGCCCCGGACCATCTACAACTGCTAATAACTCTCGTAAATCGAATGGACA
GCAATCGGTACTTTATTTTCATGTGTCCGTTCATTTTGAAACTCAGGCAA
ATGCTTGAAAGTTTTTAATGAAAACCATTTATAAGTATTCGTGTTTTGTC
CGGAGGGTGCAATAGTTTGCAAAAAAACACGTCAAAATGAGCAAACACAT
CAAATAAAGTACCCACTCCTGTCCAGAGCTCATTCTGACAGGCGAATACT
TGAAGGTTTTTGTGAAAACCAGTTCCGAGTATTCGTATTTTGTCCGGTGG
GTGAAAATATTCTTGACCCACATTTGGTAACGTAGGAACGAGCGATTGGT
CATTATCCATCGGAAAATCGTTCTCATCAAGAACAAATACCACATTCAAA
ACATGAGTACGCCCCCTCCGTCCCCCCCGCCAGTCGATACGCCAATCGGG
CCACAGCACGTTGTCGATCTATCTATCTCTCCGGTGATGCCCCGGTGTGT
ACCCCTTACTGTACCGTCAGATGGAGTCAGCGACGAAGGCCGAGACCGGC
GTCAGCGTCCTTGGACGCGGTGAAAGGCCGGCTGATGGCAGCCTCAGCGG
CGGCTGCGGTAGCGGCGGCGAACGGTTCAGGCGTAGCTGGGAAACGGGGG
GTAGAGGCACCGAAGGCGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig14581:580..3349-

>mRNA_H-paniculata_contig14581.2743.1 ID=mRNA_H-paniculata_contig14581.2743.1|Name=mRNA_H-paniculata_contig14581.2743.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig14581:580..3349- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCTCAGGCCCGTGATCAGGCGCGGCGCGTGTTGTTGAAACATTTGGA
CGGAAGCTATCGGGGAGGTGCCGACGGTTTGCCGCAGGAGCAGGAGCAGA
GACAGAGATGGCACATAAAAAAGGCGTACAGCATGAGCGAGGGTACCTTC
TCTTGGCCGGTCGACGAGGAAGTGGACGAACAAAGGTGTCTCAGGCCCGT
GATCAGGCGCGGCGCGTGTTGTTGAAACATTTGGACGGAAGCTATCGGGG
AGGTGCCGACGGTTTGCCGCAGGAGCAGGAGCAGAGACAGAGATGGCACA
TAAAAAAGGCGTACAGCATGAGCGAGGGTACCTTCTCTTGGCCGGTCGAC
GAGGAAGTGGACGAACAAAGATGGAGTCAGCGACGAAGGCCGAGACCGGC
GTCAGCGTCCTTGGACGCGGTGAAAGGCCGGCTGATGGCAGCCTCAGCGG
CGGCTGCGGTAGCGGCGGCGAACGGTTCAGGCGTAGCTGGGAAACGGGGG
GTAGAGGCACCGAAGGCGATGGAGTCAGCGACGAAGGCCGAGACCGGCGT
CAGCGTCCTTGGACGCGGTGAAAGGCCGGCTGATGGCAGCCTCAGCGGCG
GCTGCGGTAGCGGCGGCGAACGGTTCAGGCGTAGCTGGGAAACGGGGGGT
AGAGGCACCGAAGGCG
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