prot_H-paniculata_contig14577.2741.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig14577.2741.1
Unique Nameprot_H-paniculata_contig14577.2741.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length127
Homology
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 81.6 bits (200), Expect = 1.670e-15
Identity = 50/125 (40.00%), Postives = 67/125 (53.60%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSI-------RVTPSSTSYGGPMSGR-LQYMQG 117
            +KDLG    +LG+EV+RD+  G I+ISQ  YI EVLKRYG + C+ V TP+E  +     E +    E       Y+ ++G LMY   GTRPD             S TS    M+ R L+Y+QG
Sbjct: 1053 LKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGL---TQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFAVNYLSEFNKSFTSRHWSMAKRVLRYLQG 1174          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A6D2J1R0_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J1R0_9BRAS)

HSP 1 Score: 81.3 bits (199), Expect = 2.280e-15
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 93
            MKDLG+ SR+LGI+++RDR  G++ +SQ  Y+ +V+KR+   + + V TP+ G  K+SA   A +  +       Y   VG LMYA  GTRPD
Sbjct: 1068 MKDLGAASRILGIDIKRDRKEGVLWLSQSGYLGKVIKRFNMVEAKTVNTPMGGHFKLSAVSDASECVDTE--KVPYSSAVGSLMYAMVGTRPD 1158          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 79.7 bits (195), Expect = 7.900e-15
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 93
            MKD+G+ SR+LGI+++RDR  G++ +SQ +Y+ +V+KR+   + + V TP+ G  K+SA +   +  +       Y   VG +MYA  GTRPD
Sbjct: 1063 MKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTE--KYPYSSAVGSVMYAMIGTRPD 1153          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 79.3 bits (194), Expect = 1.080e-14
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPN----GNSTEYRGMVGLLMYASTGTRPD 93
            M+DLG  S +LGI +RRDRP   I +SQ  YI  VL RYG   C+   TP+   VK SA +  D     +    G S  Y  ++G +MYA  GTRPD
Sbjct: 1205 MRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPD 1301          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: UPI0014444563 (hypothetical protein n=1 Tax=Acinetobacter indicus TaxID=756892 RepID=UPI0014444563)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-14
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNG-NSTEYRGMVGLLMYASTGTRPD 93
            MKDLG+  ++LG+ + RDR NG++ +SQ  Y+++V+ R+  D+ + V TP+    K++  +S     E    N   Y   VG LMYA   TRPD
Sbjct:   17 MKDLGAAKQILGMRILRDRVNGLLKLSQEEYVKKVINRFNMDEAKPVNTPLASHFKLTKAQSPSTEQEKTYMNKVPYASAVGSLMYAMVYTRPD 110          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 78.6 bits (192), Expect = 2.000e-14
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNS-TEYRGMVGLLMYASTGTRPD 93
            MKDLG+  ++LG+E+RRDR  G +T+SQ +YI +VLKR+    C+ + TP+    K+S+ E      +    S   Y   VG LMYA   TRPD
Sbjct:  990 MKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPD 1083          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A699I3C7_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699I3C7_TANCI)

HSP 1 Score: 77.8 bits (190), Expect = 3.540e-14
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNS-TEYRGMVGLLMYASTGTRPDSIRVTPSSTSY 104
            MKDLG+  R+LG+E+RRDR  G +T+SQ +YI +VLK++     + VPTP+    K+S+ E      +    S   Y   VG LMYA   TRPD   V    + Y
Sbjct:  520 MKDLGAAKRILGMEIRRDRKMGKLTLSQIDYILKVLKKFNMSSYKPVPTPLAPHFKLSSHECPKSEEDKEDMSRVPYTSAVGSLMYAMVCTRPDLAHVVSVVSRY 624          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A4C1SXU4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SXU4_EUMVA)

HSP 1 Score: 77.8 bits (190), Expect = 3.620e-14
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 93
            +KD G L+ +LG+EV+ D   G+I +SQ  YI  VLK YG +KC+ V  P+E  ++++      K      N  +Y+ +VG LMY +  TRPD
Sbjct:  719 VKDKGVLNHILGMEVKCDGDTGVIELSQTQYILNVLKHYGMEKCKSVSVPLEAGIQVNCSADCKKV-----NQKDYQSLVGTLMYLAITTRPD 806          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A6D2HSU5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HSU5_9BRAS)

HSP 1 Score: 76.6 bits (187), Expect = 9.460e-14
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTE---YRGMVGLLMYASTGTRPDSIRVTPSSTSYGGPMSGRLQYMQGH 118
            MKDLG+ SR+LG+++ RDR  G + +SQ NY+R+V++ +     +   TP+ G  K+S+ +  ++     G  TE   Y  +VG +MYA  G+RPD         +YG  +  R     GH
Sbjct: 1072 MKDLGAASRILGMDITRDREEGTLCLSQANYLRKVIENFRMSDAKSSLTPIGGHFKLSSVKDDEE-----GVDTEVIPYASVVGSIMYAMVGSRPD--------LAYGIGLVSRFMSKPGH 1179          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH)

HSP 1 Score: 76.3 bits (186), Expect = 1.240e-13
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKIS---APESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSIRVTPSSTSYGGPMSGRLQYMQGH 118
            MK+LG  S VLGIE++RDR  G++ +SQ NYI ++LKR+G + C     P+    K++    P++ ++  E    S  Y  +VG LMYA   TRPD         S+   M  R Q   GH
Sbjct:  471 MKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDKLTKNQCPKTENEKTEME--SIPYARLVGSLMYAQVCTRPD--------LSFAVGMLSRFQSNPGH 581          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293MM55_ORNER1.670e-1540.00Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A6D2J1R0_9BRAS2.280e-1543.01Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A1J3F7G4_NOCCA7.900e-1539.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2VT18_TRAPU1.080e-1444.33Retrovirus-related Pol polyprotein from transposon... [more]
UPI00144445631.390e-1438.30hypothetical protein n=1 Tax=Acinetobacter indicus... [more]
A0A2U1MW82_ARTAN2.000e-1442.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A699I3C7_TANCI3.540e-1440.95Retrovirus-related Pol polyprotein from transposon... [more]
A0A4C1SXU4_EUMVA3.620e-1439.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2HSU5_9BRAS9.460e-1434.71Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A2P6SMQ0_ROSCH1.240e-1338.02Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..51
e-value: 7.1E-7
score: 29.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14577contigH-paniculata_contig14577:2550..2992 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14577.2741.1mRNA_H-paniculata_contig14577.2741.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig14577 2402..3094 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig14577.2741.1 ID=prot_H-paniculata_contig14577.2741.1|Name=mRNA_H-paniculata_contig14577.2741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTP
VEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSIRVTPS
STSYGGPMSGRLQYMQGHFLLPQYCA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2