mRNA_H-paniculata_contig14577.2741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A2Z7DF39_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7DF39_9LAMI) HSP 1 Score: 95.5 bits (236), Expect = 1.990e-20 Identity = 50/126 (39.68%), Postives = 82/126 (65.08%), Query Frame = 1 Query: 10 IIVVVYVDDVVTAGR-REKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKIS-APESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381 II+++YVDD++ AG RE++ + K ++S++F MKDLG+ ++LG+ + RDR NGI+ +SQG Y+++V+ R+ + + V TP+ K++ A + K + N Y +VG LMYA TRPD Sbjct: 89 IILLLYVDDMLIAGSCREEIDKLKKELSKKFAMKDLGAAKQILGMRIIRDRVNGILKLSQGEYVKKVVSRFNMTEAKPVSTPLASHFKLTEALLPSTKQEQDYMNKVPYASVVGSLMYAMVCTRPD 214
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN) HSP 1 Score: 94.4 bits (233), Expect = 9.090e-19 Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 19 VVYVDDV-VTAGRREKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNS-TEYRGMVGLLMYASTGTRPD 381 V+YVDD+ + A ++++ E K +S F MKDLG+ ++LG+E+RRDR G +T+SQ +YI +VLKR+ C+ + TP+ K+S+ E + S Y VG LMYA TRPD Sbjct: 961 VLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPD 1083
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE) HSP 1 Score: 92.4 bits (228), Expect = 1.450e-18 Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 1 Query: 13 IVVVYVDDVVTAGRR-EKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381 I+ VYVDD++ E + E K + +R++MKDLG LS +LGI V +D+ I + Q YI +LK+YG DK V TP + VK+ + P +P+ Y+ MVG L+YA+ TRPD Sbjct: 49 IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPS----TYQSMVGSLLYAAMTTRPD 168
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A699I3C7_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699I3C7_TANCI) HSP 1 Score: 93.6 bits (231), Expect = 1.500e-18 Identity = 53/134 (39.55%), Postives = 77/134 (57.46%), Query Frame = 1 Query: 19 VVYVDDV-VTAGRREKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNS-TEYRGMVGLLMYASTGTRPDSIRVTPSSTSY 414 V+YVDD+ + A ++++ E K +S F MKDLG+ R+LG+E+RRDR G +T+SQ +YI +VLK++ + VPTP+ K+S+ E + S Y VG LMYA TRPD V + Y Sbjct: 491 VLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKRILGMEIRRDRKMGKLTLSQIDYILKVLKKFNMSSYKPVPTPLAPHFKLSSHECPKSEEDKEDMSRVPYTSAVGSLMYAMVCTRPDLAHVVSVVSRY 624
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A8D8ESS5_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8ESS5_CULPI) HSP 1 Score: 90.1 bits (222), Expect = 7.320e-18 Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1 Query: 10 IIVVVYVDDVVTAGRREKVYE-FKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381 +I+V+YVDD+V AG K E K F M D+G + LG++V R+R G++ ISQ Y+ +L+R+G D C+ V TP+E ++K+ K E S YR ++G L YA TRPD Sbjct: 15 LIIVLYVDDIVIAGTTLKAVETIKRCFFNEFDMTDVGEIKCFLGMQVERNREEGVMRISQKQYMESLLRRFGMDDCKPVSTPIESRLKLH------KGTEEERTSQPYRELIGCLTYACLTTRPD 133
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: Q02902_ARATH (Orf 3 (Fragment) n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q02902_ARATH) HSP 1 Score: 90.5 bits (223), Expect = 1.430e-17 Identity = 45/120 (37.50%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 25 YVDDVVTAGR-REKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381 YVDD++ AG+ + ++ + K +S F MKD+G SR+LGI++ RDR NG++ +SQ YI V++R+ + + +P+ K++A D+ + N+ Y VG +MYA GTRPD Sbjct: 269 YVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMAEAKVTRSPIGAHFKLAAVRDDDECID--NNALPYASAVGNIMYAMIGTRPD 386
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 90.5 bits (223), Expect = 1.480e-17 Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 1 Query: 13 IVVVYVDDVVTAGRR-EKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSIRVTPS--------STSYGGPMSGRLQYMQGHFLL 465 I+ VYVDD++ E + E K + ++++MKD+G LS +LGI V +D+ N + + Q +YI VL++YG DK V TP + VK+ + P P Y+ +VG L+YA+ TRPD + + +T++ + L+Y++G L Sbjct: 189 ILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPG----TYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINL 344
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR) HSP 1 Score: 90.5 bits (223), Expect = 1.610e-17 Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 1 Query: 13 IVVVYVDDVVTAGRR-EKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSIRVTPS--------STSYGGPMSGRLQYMQGHFLL 465 I+ VYVDD++ E + E K + ++++MKD+G LS +LGI V +D+ N + + Q +YI VL++YG DK V TP + VK+ + P P Y+ +VG L+YA+ TRPD + + +T++ + L+Y++G L Sbjct: 328 ILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPG----TYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINL 483
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: K1W7N8_MARBU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Marssonina brunnea f. sp. multigermtubi (strain MB_m1) TaxID=1072389 RepID=K1W7N8_MARBU) HSP 1 Score: 90.5 bits (223), Expect = 1.780e-17 Identity = 48/127 (37.80%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 10 IIVVVYVDDVVTAGR-REKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVE--GKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381 +I+ +YVDD++ +GR R +V K +S+RF+M DLG ++ LG+ V RDR N +++ Q Y+ ++++ +G + C TP+E KV + P PPE EY+ ++G LMYA G+RPD Sbjct: 440 VIIAIYVDDLLISGRDRAEVNRLKAALSKRFQMTDLGPIAYYLGMTVTRDRANRTLSLGQRAYVEKIIQDFGIEDCNTYGTPIEVSSKVLVPPPPKYQAPPELRH---EYQRLIGSLMYAMLGSRPD 563
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: Q9XEB4_ARATH (Putative polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XEB4_ARATH) HSP 1 Score: 90.5 bits (223), Expect = 1.850e-17 Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 1 Query: 22 VYVDDVVTAGRR-EKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSI 387 VYVDD++ AG+ +V + K +S F MKD+G+ SR+LGI++ R+R G + +SQ Y+ +V++R+ +GV TP+ K+SA + D+ + Y VG +MYA GTRPD + Sbjct: 683 VYVDDMLIAGKSMAEVNKVKEGLSLNFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDE--SVDTEVCPYSSAVGSVMYAMIGTRPDVV 803 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14577.2741.1 >prot_H-paniculata_contig14577.2741.1 ID=prot_H-paniculata_contig14577.2741.1|Name=mRNA_H-paniculata_contig14577.2741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPback to top mRNA from alignment at H-paniculata_contig14577:2402..3094- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14577.2741.1 ID=mRNA_H-paniculata_contig14577.2741.1|Name=mRNA_H-paniculata_contig14577.2741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at H-paniculata_contig14577:2402..3094- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14577:2402..3094- >mRNA_H-paniculata_contig14577.2741.1 ID=mRNA_H-paniculata_contig14577.2741.1|Name=mRNA_H-paniculata_contig14577.2741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig14577:2402..3094- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |