mRNA_H-paniculata_contig14577.2741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14577.2741.1
Unique NamemRNA_H-paniculata_contig14577.2741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A2Z7DF39_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7DF39_9LAMI)

HSP 1 Score: 95.5 bits (236), Expect = 1.990e-20
Identity = 50/126 (39.68%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   10 IIVVVYVDDVVTAGR-REKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKIS-APESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381
            II+++YVDD++ AG  RE++ + K ++S++F MKDLG+  ++LG+ + RDR NGI+ +SQG Y+++V+ R+   + + V TP+    K++ A   + K  +   N   Y  +VG LMYA   TRPD
Sbjct:   89 IILLLYVDDMLIAGSCREEIDKLKKELSKKFAMKDLGAAKQILGMRIIRDRVNGILKLSQGEYVKKVVSRFNMTEAKPVSTPLASHFKLTEALLPSTKQEQDYMNKVPYASVVGSLMYAMVCTRPD 214          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 94.4 bits (233), Expect = 9.090e-19
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   19 VVYVDDV-VTAGRREKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNS-TEYRGMVGLLMYASTGTRPD 381
            V+YVDD+ + A  ++++ E K  +S  F MKDLG+  ++LG+E+RRDR  G +T+SQ +YI +VLKR+    C+ + TP+    K+S+ E      +    S   Y   VG LMYA   TRPD
Sbjct:  961 VLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPD 1083          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 92.4 bits (228), Expect = 1.450e-18
Identity = 50/124 (40.32%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   13 IVVVYVDDVVTAGRR-EKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381
            I+ VYVDD++      E + E K  + +R++MKDLG LS +LGI V +D+    I + Q  YI  +LK+YG DK   V TP +  VK+   +    P +P+     Y+ MVG L+YA+  TRPD
Sbjct:   49 IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPS----TYQSMVGSLLYAAMTTRPD 168          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A699I3C7_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699I3C7_TANCI)

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-18
Identity = 53/134 (39.55%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   19 VVYVDDV-VTAGRREKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNS-TEYRGMVGLLMYASTGTRPDSIRVTPSSTSY 414
            V+YVDD+ + A  ++++ E K  +S  F MKDLG+  R+LG+E+RRDR  G +T+SQ +YI +VLK++     + VPTP+    K+S+ E      +    S   Y   VG LMYA   TRPD   V    + Y
Sbjct:  491 VLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKRILGMEIRRDRKMGKLTLSQIDYILKVLKKFNMSSYKPVPTPLAPHFKLSSHECPKSEEDKEDMSRVPYTSAVGSLMYAMVCTRPDLAHVVSVVSRY 624          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A8D8ESS5_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8ESS5_CULPI)

HSP 1 Score: 90.1 bits (222), Expect = 7.320e-18
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   10 IIVVVYVDDVVTAGRREKVYE-FKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381
            +I+V+YVDD+V AG   K  E  K      F M D+G +   LG++V R+R  G++ ISQ  Y+  +L+R+G D C+ V TP+E ++K+       K  E    S  YR ++G L YA   TRPD
Sbjct:   15 LIIVLYVDDIVIAGTTLKAVETIKRCFFNEFDMTDVGEIKCFLGMQVERNREEGVMRISQKQYMESLLRRFGMDDCKPVSTPIESRLKLH------KGTEEERTSQPYRELIGCLTYACLTTRPD 133          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: Q02902_ARATH (Orf 3 (Fragment) n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q02902_ARATH)

HSP 1 Score: 90.5 bits (223), Expect = 1.430e-17
Identity = 45/120 (37.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:   25 YVDDVVTAGR-REKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381
            YVDD++ AG+ + ++ + K  +S  F MKD+G  SR+LGI++ RDR NG++ +SQ  YI  V++R+   + +   +P+    K++A    D+  +   N+  Y   VG +MYA  GTRPD
Sbjct:  269 YVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYIHNVVQRFNMAEAKVTRSPIGAHFKLAAVRDDDECID--NNALPYASAVGNIMYAMIGTRPD 386          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 90.5 bits (223), Expect = 1.480e-17
Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   13 IVVVYVDDVVTAGRR-EKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSIRVTPS--------STSYGGPMSGRLQYMQGHFLL 465
            I+ VYVDD++      E + E K  + ++++MKD+G LS +LGI V +D+ N  + + Q +YI  VL++YG DK   V TP +  VK+   +    P  P      Y+ +VG L+YA+  TRPD  +   +        +T++   +   L+Y++G   L
Sbjct:  189 ILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPG----TYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINL 344          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR)

HSP 1 Score: 90.5 bits (223), Expect = 1.610e-17
Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   13 IVVVYVDDVVTAGRR-EKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSIRVTPS--------STSYGGPMSGRLQYMQGHFLL 465
            I+ VYVDD++      E + E K  + ++++MKD+G LS +LGI V +D+ N  + + Q +YI  VL++YG DK   V TP +  VK+   +    P  P      Y+ +VG L+YA+  TRPD  +   +        +T++   +   L+Y++G   L
Sbjct:  328 ILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPG----TYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINL 483          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: K1W7N8_MARBU (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Marssonina brunnea f. sp. multigermtubi (strain MB_m1) TaxID=1072389 RepID=K1W7N8_MARBU)

HSP 1 Score: 90.5 bits (223), Expect = 1.780e-17
Identity = 48/127 (37.80%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   10 IIVVVYVDDVVTAGR-REKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVE--GKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPD 381
            +I+ +YVDD++ +GR R +V   K  +S+RF+M DLG ++  LG+ V RDR N  +++ Q  Y+ ++++ +G + C    TP+E   KV +  P     PPE      EY+ ++G LMYA  G+RPD
Sbjct:  440 VIIAIYVDDLLISGRDRAEVNRLKAALSKRFQMTDLGPIAYYLGMTVTRDRANRTLSLGQRAYVEKIIQDFGIEDCNTYGTPIEVSSKVLVPPPPKYQAPPELRH---EYQRLIGSLMYAMLGSRPD 563          
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Match: Q9XEB4_ARATH (Putative polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XEB4_ARATH)

HSP 1 Score: 90.5 bits (223), Expect = 1.850e-17
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   22 VYVDDVVTAGRR-EKVYEFKHDISQRFRMKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTPVEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSI 387
            VYVDD++ AG+   +V + K  +S  F MKD+G+ SR+LGI++ R+R  G + +SQ  Y+ +V++R+     +GV TP+    K+SA  + D+    +     Y   VG +MYA  GTRPD +
Sbjct:  683 VYVDDMLIAGKSMAEVNKVKEGLSLNFEMKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDE--SVDTEVCPYSSAVGSVMYAMIGTRPDVV 803          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14577.2741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z7DF39_9LAMI1.990e-2039.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2U1MW82_ARTAN9.090e-1940.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A0S7JP25_9TELE1.450e-1840.32POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A699I3C7_TANCI1.500e-1839.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A8D8ESS5_CULPI7.320e-1839.20Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
Q02902_ARATH1.430e-1737.50Orf 3 (Fragment) n=3 Tax=Arabidopsis thaliana TaxI... [more]
A0A6G0HFF8_LARCR1.480e-1732.50Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A6G0J2S8_LARCR1.610e-1732.50Copia protein Gag-int-pol protein Copia VLP protei... [more]
K1W7N8_MARBU1.780e-1737.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q9XEB4_ARATH1.850e-1738.21Putative polyprotein n=1 Tax=Arabidopsis thaliana ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14577contigH-paniculata_contig14577:2402..3094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog67593.Physo109406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QHRW@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size631
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14577.2741.1prot_H-paniculata_contig14577.2741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14577 2550..2992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.7682903-UTR-H-paniculata_contig14577:2401..25491622929159.7682903-UTR-H-paniculata_contig14577:2401..2549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14577 2402..2549 -
1691480754.10278-UTR-H-paniculata_contig14577:2401..25491691480754.10278-UTR-H-paniculata_contig14577:2401..2549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14577 2402..2549 -
1622929159.8168461-UTR-H-paniculata_contig14577:2992..30941622929159.8168461-UTR-H-paniculata_contig14577:2992..3094Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14577 2993..3094 -
1691480754.1462371-UTR-H-paniculata_contig14577:2992..30941691480754.1462371-UTR-H-paniculata_contig14577:2992..3094Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14577 2993..3094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.7836308-CDS-H-paniculata_contig14577:2549..27211622929159.7836308-CDS-H-paniculata_contig14577:2549..2721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14577 2550..2721 -
1691480754.117043-CDS-H-paniculata_contig14577:2549..27211691480754.117043-CDS-H-paniculata_contig14577:2549..2721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14577 2550..2721 -
1622929159.801209-CDS-H-paniculata_contig14577:2783..29921622929159.801209-CDS-H-paniculata_contig14577:2783..2992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14577 2784..2992 -
1691480754.1358888-CDS-H-paniculata_contig14577:2783..29921691480754.1358888-CDS-H-paniculata_contig14577:2783..2992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14577 2784..2992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14577.2741.1

>prot_H-paniculata_contig14577.2741.1 ID=prot_H-paniculata_contig14577.2741.1|Name=mRNA_H-paniculata_contig14577.2741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MKDLGSLSRVLGIEVRRDRPNGIITISQGNYIREVLKRYGFDKCRGVPTP
VEGKVKISAPESADKPPEPNGNSTEYRGMVGLLMYASTGTRPDSIRVTPS
STSYGGPMSGRLQYMQGHFLLPQYCA*
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mRNA from alignment at H-paniculata_contig14577:2402..3094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14577.2741.1 ID=mRNA_H-paniculata_contig14577.2741.1|Name=mRNA_H-paniculata_contig14577.2741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at H-paniculata_contig14577:2402..3094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACGGACATTATCGTTGTCGTCTATGTTGACGACGTCGTCACCGCTGG ACGTCGTGAGAAAGTATACGAGTTCAAGCATGACATAAGTCAGCGTTTTA GGATGAAAGACTTGGGTTCTCTCTCACGCGTGTTGGGAATAGAAGTACGA CGTGACCGCCCTAATGGTATCATAACCATTTCCCAGGGTAACTACATCCG CGAGGTACTAAAACGATACGGTTTTGACAAGTGTCGAGGGGTACCTACCC CTGTAGAGGGAAAGGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCC CCCGAACCGAAGTCACTTGGGCTGTACTGTCGGATATAGGGAGAGGAGTA GAAGAAAACAGTAGAGGGAGAAGTGGTAATTCAACTGAATACAGGGGTAT GGTAGGATTACTCATGTACGCCTCGACAGGAACTAGACCTGATAGTATTC GCGTTACACCAAGCAGCACGTCGTATGGAGGACCCATGTCGGGAAGACTT CAGTACATGCAAGGGCACTTTTTGTTACCTCAGTACTGTGCCTGACCTCG GCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGCAGGATTCGTT GATGATTGGGCGGAAGATGTTGAGGAACAAAAGTCCACAACAGGATACGT TTTCAAGCTGAAGGGTAGTGCGATAAGTTGGTGCTCTAGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14577:2402..3094-

>mRNA_H-paniculata_contig14577.2741.1 ID=mRNA_H-paniculata_contig14577.2741.1|Name=mRNA_H-paniculata_contig14577.2741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig14577:2402..3094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGTTCTCTCTCACGCGTGTTGGGAATAGAAGTACGACG
TGACCGCCCTAATGGTATCATAACCATTTCCCAGGGTAACTACATCCGCG
AGGTACTAAAACGATACGGTTTTGACAAGTGTCGAGGGGTACCTACCCCT
GTAGAGGGAAAGGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCCC
CGAACCGAAATGAAAGACTTGGGTTCTCTCTCACGCGTGTTGGGAATAGA
AGTACGACGTGACCGCCCTAATGGTATCATAACCATTTCCCAGGGTAACT
ACATCCGCGAGGTACTAAAACGATACGGTTTTGACAAGTGTCGAGGGGTA
CCTACCCCTGTAGAGGGAAAGGTGAAGATTTCGGCACCCGAGTCGGCCGA
CAAGCCCCCCGAACCGAATGGTAATTCAACTGAATACAGGGGTATGGTAG
GATTACTCATGTACGCCTCGACAGGAACTAGACCTGATAGTATTCGCGTT
ACACCAAGCAGCACGTCGTATGGAGGACCCATGTCGGGAAGACTTCAGTA
CATGCAAGGGCACTTTTTGTTACCTCAGTACTGTGCCTGATGGTAATTCA
ACTGAATACAGGGGTATGGTAGGATTACTCATGTACGCCTCGACAGGAAC
TAGACCTGATAGTATTCGCGTTACACCAAGCAGCACGTCGTATGGAGGAC
CCATGTCGGGAAGACTTCAGTACATGCAAGGGCACTTTTTGTTACCTCAG
TACTGTGCCTGA
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