Homology
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match:
D7FGZ2_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ2_ECTSI)
HSP 1 Score: 110 bits (274), Expect = 3.580e-22
Identity = 68/138 (49.28%), Postives = 85/138 (61.59%), Query Frame = 1
Query: 4 TSGICLEAVNEQGVLQRRRDTGMLEQACAHAFCFICVMTWAERTNTCPMCKARFNAV-HRAPQKTARGL--GETVEVEDRDPTADNNSGDEDLAAELAEQEGSINGESDLDDDDDDPNLLATQHELHGYVLNDFVVDD 408
T GICLE V++QG L RR +L ACAHA+CF C+ W+ERTNTCP+CK RFNA+ H K+ L GE VEV++RD A N S DEDLAA LA QE G S + DD + + HGY+ + F+V D
Sbjct: 56 TCGICLETVDDQGFLLRRAACDVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRHGGGSKSGIRLAAGEIVEVQERDQAA-NCSSDEDLAAALAAQES---GTSSGEQDDGEAGRVGP----HGYISDGFLVAD 185
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match:
A0A6H5KDT9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT9_9PHAE)
HSP 1 Score: 108 bits (269), Expect = 7.650e-22
Identity = 64/138 (46.38%), Postives = 83/138 (60.14%), Query Frame = 1
Query: 4 TSGICLEAVNEQGVLQRRRDTGMLEQACAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTAR---GLGETVEVEDRDPTADNNSGDEDLAAELAEQEGSINGESDLDDDDDDPNLLATQHELHGYVLNDFVVDD 408
T GICLE V++QG L +R G+L ACAHA+CF C+ W+ERTNTCP+CK RFNA+ + GE VEV++RD AD +S DEDLAA LA Q+ G S + DD + HGY+ + F+V D
Sbjct: 57 TCGICLETVDDQGFLLKRAACGVLAPACAHAYCFACISIWSERTNTCPLCKERFNAIRNGGGSKSGIRLAAGEIVEVQERDQAADCSS-DEDLAAALATQDS---GTSSSEQDDGAAGRVGP----HGYISDGFLVAD 186
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match:
UPI001CF23A80 (uncharacterized protein LOC114959687 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF23A80)
HSP 1 Score: 64.7 bits (156), Expect = 6.210e-7
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 1
Query: 13 ICLEAVNEQGVLQRRRDTGMLEQACAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTARGLGETVEVEDRDPTADNNSGDEDLAAELAEQEGSINGESDLDDDDDDPNLL 354
ICLE V+ +G L C+H FCF C++ WAE TNTCP+CKARF + + R V V D+D N+ DEDL +AE DLDDD + P+ L
Sbjct: 29 ICLERVSCRGKLS----------VCSHWFCFPCILEWAENTNTCPICKARFRCITKIHVSPFRSPPIKVRVGDKDQRVWND--DEDL---VAEDVLDAIDPDDLDDDYEPPHHL 127
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Match:
A0A7S0KY80_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KY80_9STRA)
HSP 1 Score: 60.1 bits (144), Expect = 1.350e-5
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 85 CAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTARGLGETVEVEDRDPTAD 249
C H FCF C+ TWA R NTCP+CK RF + R RG+ ++ +V +RD +D
Sbjct: 218 CNHRFCFECIETWANRENTCPLCKIRFTKIGRLQNSNRRGIKKSKKVVNRDQRSD 272
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14570.2739.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 3.58e-22 / Id = 49.28 Expect = 7.65e-22 / Id = 46.38 Expect = 6.21e-7 / Id = 39.47 Expect = 1.35e-5 / Id = 45.45 Sequence D7FGZ2_ECTSI A0A6H5KDT9_9PHAE UPI001CF23A80 A0A7S0KY80_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal peptide Exons 3 Model size 2790 Cds size 2538 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14570.2739.1
>prot_H-paniculata_contig14570.2739.1 ID=prot_H-paniculata_contig14570.2739.1|Name=mRNA_H-paniculata_contig14570.2739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=846bp
MLEQACAHAFCFICVMTWAERTNTCPMCKARFNAVHRAPQKTARGLGETV back to top mRNA from alignment at H-paniculata_contig14570:892..4356+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14570.2739.1 ID=mRNA_H-paniculata_contig14570.2739.1|Name=mRNA_H-paniculata_contig14570.2739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3465bp|location=Sequence derived from alignment at H-paniculata_contig14570:892..4356+ (Halopteris paniculata Hal_grac_a_UBK monoicous)AATACCTCAGGAATATGCTTGGAGGCAGTGAACGAGCAGGGAGTGCTCCA
GCGCCGGCGTGACACCGGC ATGCTCGAGCAGGCCTGTGCGCATGCGTTCT
GTTTCATCTGTGTGATGACCTGGGCAGAGCGGACCAATACGTGTCCCATG
TGCAAGGCACGGTTTAATGCGGTGCACCGCGCCCCTCAAAAGACTGCTCG
CGGGCTCGGGGAAACCGTCGAG GTGAATAAACAAGTTTGCGATAAGTTTG
CCGGTTTTGAAAGTATGTCTCGGTGTGTTAGTCCACTGCGTTCTTACCAT
GGCATTGTGTGCAATCAATTCGGCGCTGTTGTCTGCGAAAGTGTGGTTCT
GCACTGTACCCTAGACTCGTTAAGCTGGATCATGCACACATGAGAGCTTT
TCAGCTATTGCACACGGTATTGCGCATCACTGTGCTGCTGTACACAACGC
GGGTTCCAGCTTTTGAGGAATAGTTACTCCAATAAACAGATACCGAAACA
TTGCGCTTTCCCCAAGTAATGCGCCATCATTTTCCTCCCTGTCTGGGAAA
AAAGGTGGAGGATAGAGACCCGACCGCCGACAACAACTCTGGTGATGAAG
ATCTAGCCGCCGAGTTAGCAGAGCAAGAAGGCAGTATCAACGGTGAAAGC
GATCTCGATGATGATGATGATGATCCAAATCTACTAGCAACGCAGCACGA
GTTACACGGCTACGTCCTGAACGATTTCGTGGTGGATGATGACGAAGTCG
AAGTCGACACGGAAGACGATGACGAGGAGTGGGAGGAGTGGCGGAAGCCG
GCAGCGGCAGCACAATTGGAACCCCGACGGCAACCACGACGTGCCGTTGC
CGTTGCTGCCGCTGCTGCTGCCACCGCTGCTGCAATTGGTTCAAGACGCA
CGCCGAGAACTACCTCTTGGTTCTCTACCGCCCGCCGCTCTCCCCCCTGC
CGCCTCGGTCGGCCCCGTGCTTTCGGGACTGATATGAATGAGCACGTAGA
GGAGGTGTTCTTTTCTCCAGGGAATAGCTTTCAGAGAAGGCCTACGTACA
GGGGGAGGGCAGCGACGGCCGCGGCGGTGGCGGCGAGCGAAAGGATCGGT
GCGGCAGCTGGAGGGCGTCTCCGGAGAGGACCAGAGACTGAGGGAAGAAG
TGCTTCGTCTCCGAGCGAAGTCGTTGAAGTGGACGACGACGTTTTGCCAG
ATGAGCTGCGACAGCTTCAGCGAGAAGCAG GTTAGTGTTTTCCGTTCCGT
TCCCGTACCGGTCCCATCCATTTGTTCTTCGCAGTTATCGGTAGCAGATG
GCTACAGAACATTCTTCGGTTACGTCCGCCCATCCATCTGTTCGGCTAGT
CGAGATTCCCATCTGTCGGCAAAAGCAGCTCGCGTGCAAACTGCTATGCG
CCAAGTTTTTCCTTGTGATCTCTCTCAAAAAGTTCCCATCCCTGATCGAA
TGTTTTTCAACAACCTGTCAACTGGATGTACGACGTATTGATATCGTATC
ACTATTCGAACCCATTCTGCCCCCCCTTCCCGTCTTATTGTGCGCCATGC
TCGCGTTGATGTTCGGCATAAAGCTCGTGTTTTAGGTAAATCACCGCTGA
GGCCGCGTCGCCGCCCCCCGCCGGGGTCTCGCTTGCCTGCCACAACTGGC
GCTACGTCGACGCGTCCGACGCGCAGCACCTCTGCGTCAACTTCGGCAGC
TTCGCCATTCTCCTTGAGTTGGGGTCAACGCAGTGCCTCCAGCGATAACG
GCGTTCTGGGTGATGTCGGCAACCGCCGCGGGGACAGTAACGAGCCATCT
CGTTTAGGGAGGGAGCAGGGTTTACTGGTGGACCTCGTTAGAGCGAGTAG
CCCATGTCACCAACGACAGCGGAGGCGCCCTGTTCTTAGATCACTAGCGA
ACGCACGAGCGCCACTGCGGAGCATACTCGGGGGACGAGGAAACACCATA
ACCGCCGATGACGTTTCGTGCTGTTCACAAGAAGAGGATGAGGGTACGTC
GTGCGCACTCGGCGAGATAGATTGTTCCAACCCTGTGGCGGCGGGGGCGG
CGAGCCCGGTGTGTGGTAGAGTTGAGGACCCGCCGACGGCTGCAGCGGCG
ACAACACTTTTTGCCAGAGGATCCAGCTATAGGAGCGCAGGAGCGCATGG
CTTGGCAGAATTGAATCAGGGAAGTACGGGGGGGACGGAAGCGTCGTCAA
GTTCTTTGCCCGCGCAGTCGGTACCGCGAAGACACCTCTCGGCCATCGGG
CGTGGAGGAGCTAGAGCTGGAGCTGGTGCTGGTAATAGTAGTGGTGGCAG
TGGGTTCGTGTCGGGTCAGTGGATTCCTCGCAGGGTGCACGGAGAAGAGC
ACAGGAAGACGACAACAACAGCGTCGCGAGCAGGAACCGCTCTGACTCGA
CCTCGAGGGCAGGAACAACAGCAATCCGCTAGTGCATCGCTCACTAGGAC
CACGACTCACCGTACAGGCATCACTGGCTGTGACAAAAGCGCTAGCAGTA
GCGGCACCACCCTTTTCCCACGACAATGCGATGGGTCTTCTGATGACGCT
TACAGCACCGATGGTTTTGTCACAGAGCGCACAAGCGTCAGCATCAGCCA
GGGAGGTCGACGGGCAATTGTCGATGCAACTGTCGGGCGGGGAGGAGTTA
GGGGTCGAAGCGTGCACGAGTGTGCAACGTCTAGGCTAGTGAAGGAGTCG
GCGCAAGGAAGTGGTGGTGACGGCACCGGCTGCGGTATTGTGGGGTTCGA
TGACAGTGACGACGACGAGGAATGGATGGCGCAATCGCCGTCTGTCAAGC
TGGTCGTACAGCGGAGCGAAAGAATCCAACCAGGGGAACGGGAGCGCACA
GCACGTGCAAAACGCGGTAGGGATGGTAAGGCAGACGTTAAGGACGCCGA
TAAGAAACGATTGCAGCGCAGAAGATTCAGAGGGGACTCGGGCGACTCGG
ATGACGACGACGAGGAAGGGGAGATGGAGTTCAAGTGGCAAGAGGAGAAG
ACTTTGTCGATATCAAGTGAATCAGATGCAAGAGAAGGAACTGAGTTTGA
GGAGGTTGATGGGGAACAGACAACGCCACCGGTGTCTCCTTGTGTGCCCC
TCCGCACTCGACTGTTGCAGCGCCAACAAGAGCGCGATAGGACTGCCGCT
GGTAAGCCACGGTATGTTGGGTCTAGCTCTTCTTTTTCTTCATCTGCTGC
GGCTCGACCGACTTTGCCAGTATCGACATGGTTGCAGCAGTTCTGCTTCA
CGGGTTCCGCTACTGCTGCTACCTCTCCGTAA AGGCGAAATCGAGTTTCT
ATCTTGGTCTGGTTTATCTTTTTAGGCTTGATACTTTTGAAATCATGCAA
GAGGTTAGGGTGGCAGGTATGTGGATGATATTTCTCTGGAAATATTTCGC
TCCGTCAGCGAGTACGATGGATTGACGGCGTGATCTGGTTATGTGTGGGT
TGTGGGTAGGGGCAG back to top Coding sequence (CDS) from alignment at H-paniculata_contig14570:892..4356+
>mRNA_H-paniculata_contig14570.2739.1 ID=mRNA_H-paniculata_contig14570.2739.1|Name=mRNA_H-paniculata_contig14570.2739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5076bp|location=Sequence derived from alignment at H-paniculata_contig14570:892..4356+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top