mRNA_H-paniculata_contig14568.2736.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14568.2736.1
Unique NamemRNA_H-paniculata_contig14568.2736.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: D7G8D7_ECTSI (ARL1, ARF-like Ras superfamily GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D7_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 1.980e-74
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERM+IAKQELMAMLE
Sbjct:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMAIAKQELMAMLE 114          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: B8CE86_THAPS (Adp-ribosylation factor 1 n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8CE86_THAPS)

HSP 1 Score: 209 bits (532), Expect = 2.940e-67
Identity = 101/114 (88.60%), Postives = 110/114 (96.49%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI++SRVF++LFGSKEVRILILGLDNAGKTTILYRLQNE+D+ +QTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDS+D ERMS+AK EL AMLE
Sbjct:    1 MGIIMSRVFESLFGSKEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSADVERMSVAKGELAAMLE 114          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: A0A836CD21_9STRA (ARL1, ARF-like ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD21_9STRA)

HSP 1 Score: 208 bits (529), Expect = 8.150e-67
Identity = 101/114 (88.60%), Postives = 110/114 (96.49%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI+LS+VFQA+FGSKEVRILILGLDNAGKTTIL RLQNEA+++IQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ER+ IAKQEL AMLE
Sbjct:    1 MGILLSKVFQAVFGSKEVRILILGLDNAGKTTILLRLQNEAEEDIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADTERLGIAKQELAAMLE 114          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: A0A7S2DCF0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCF0_9STRA)

HSP 1 Score: 207 bits (526), Expect = 9.990e-67
Identity = 97/114 (85.09%), Postives = 109/114 (95.61%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI+ SRVFQ++FGSKEVRILILGLDNAGKTTILY+LQNE D+ I TIPTIGFNVETL+YKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+DRER+++A+QEL AMLE
Sbjct:    1 MGIIFSRVFQSIFGSKEVRILILGLDNAGKTTILYKLQNETDEEINTIPTIGFNVETLKYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADRERLNVAQQELQAMLE 114          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: A0A6U1B3M7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1B3M7_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.560e-66
Identity = 98/114 (85.96%), Postives = 110/114 (96.49%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI  SR+FQ +FGSKEVRILILGLDNAGKTTILYRLQNE+D++IQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D+ER+++A+QEL AMLE
Sbjct:   32 MGIFFSRIFQRIFGSKEVRILILGLDNAGKTTILYRLQNESDEDIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADKERLNVAQQELQAMLE 145          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: A0A7S2DEW5_9STRA (Hypothetical protein n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2DEW5_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.330e-66
Identity = 97/114 (85.09%), Postives = 109/114 (95.61%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI+ SRVFQ++FGSKEVRILILGLDNAGKTTILY+LQNE D+ I TIPTIGFNVETL+YKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+DRER+++A+QEL AMLE
Sbjct:    1 MGIIFSRVFQSIFGSKEVRILILGLDNAGKTTILYKLQNETDEEINTIPTIGFNVETLKYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADRERLNVAQQELQAMLE 114          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: F0YGB1_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YGB1_AURAN)

HSP 1 Score: 206 bits (523), Expect = 6.470e-66
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDN-IQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI+ SRVFQALFGSKEVRILILGLDNAGKTTILY+LQNE DD  I TIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D+ER+++A+QEL AMLE
Sbjct:    1 MGILFSRVFQALFGSKEVRILILGLDNAGKTTILYKLQNETDDEEIMTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADKERLAVARQELQAMLE 115          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: A0A1E7FFD0_9STRA (Arl1-family small GTPase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFD0_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.910e-65
Identity = 98/114 (85.96%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI+ S+VF+ LFGSKEVRILILGLDNAGKTTILYRLQNE+D+ +QTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ERM +AK EL AMLE
Sbjct:    1 MGILFSKVFETLFGSKEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADAERMPVAKGELAAMLE 114          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: A0A7S3DQ25_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQ25_9STRA)

HSP 1 Score: 205 bits (521), Expect = 7.520e-65
Identity = 98/114 (85.96%), Postives = 109/114 (95.61%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI++SR+F++LFGSKEVRILILGLDNAGKTTILYRLQNE D+ +QTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ERMS+A+ EL AMLE
Sbjct:   54 MGILMSRLFESLFGSKEVRILILGLDNAGKTTILYRLQNEGDEVVQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADIERMSVARGELTAMLE 167          
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Match: A0A6S9DTD2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DTD2_HETAK)

HSP 1 Score: 200 bits (509), Expect = 8.740e-64
Identity = 95/114 (83.33%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRERMSIAKQELMAMLE 342
            MGI  S++F +LFGSKEVRILILGLDNAGKTTILYRLQN++D+ IQT+PTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAI+FVVDS+D ER+ +A+QEL AMLE
Sbjct:    1 MGIFFSQLFNSLFGSKEVRILILGLDNAGKTTILYRLQNDSDEVIQTVPTIGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADAERVHVARQELSAMLE 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14568.2736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8D7_ECTSI1.980e-7499.12ARL1, ARF-like Ras superfamily GTPase n=2 Tax=Ecto... [more]
B8CE86_THAPS2.940e-6788.60Adp-ribosylation factor 1 n=15 Tax=Bacillariophyta... [more]
A0A836CD21_9STRA8.150e-6788.60ARL1, ARF-like ras superfamily GTPase n=1 Tax=Trib... [more]
A0A7S2DCF0_9STRA9.990e-6785.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U1B3M7_9STRA1.560e-6685.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DEW5_9STRA2.330e-6685.09Hypothetical protein n=2 Tax=Dictyochophyceae TaxI... [more]
F0YGB1_AURAN6.470e-6686.96Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A1E7FFD0_9STRA1.910e-6585.96Arl1-family small GTPase n=1 Tax=Fragilariopsis cy... [more]
A0A7S3DQ25_9STRA7.520e-6585.96Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A6S9DTD2_HETAK8.740e-6483.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14568contigH-paniculata_contig14568:3611..6498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.9
Seed ortholog evalue4.9e-57
Seed eggNOG ortholog2880.D7G8D7
Preferred nameARL1
KEGG koko:K07942,ko:K07977
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000139,GO:0000166,GO:0001505,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006836,GO:0006886,GO:0006892,GO:0006893,GO:0006897,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007033,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007431,GO:0007444,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009404,GO:0009888,GO:0009987,GO:0010256,GO:0010517,GO:0010518,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019748,GO:0019904,GO:0022607,GO:0023052,GO:0023061,GO:0030234,GO:0030334,GO:0031090,GO:0031503,GO:0031584,GO:0031984,GO:0032258,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033157,GO:0033227,GO:0033363,GO:0033365,GO:0033554,GO:0034067,GO:0034497,GO:0034613,GO:0034629,GO:0034976,GO:0035220,GO:0035272,GO:0035295,GO:0035639,GO:0036094,GO:0036465,GO:0040012,GO:0042147,GO:0042886,GO:0043001,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048488,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051270,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060191,GO:0060193,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0061024,GO:0061919,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070727,GO:0070861,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0072659,GO:0072665,GO:0072666,GO:0090087,GO:0090150,GO:0090158,GO:0097159,GO:0097367,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098876,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:1901265,GO:1901363,GO:1903292,GO:1903827,GO:1905037,GO:1990778,GO:2000145
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0072@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Exons2
Model size342
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929159.1292284-CDS-H-paniculata_contig14568:3610..38081622929159.1292284-CDS-H-paniculata_contig14568:3610..3808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14568 3611..3808 +
1691480753.7110133-CDS-H-paniculata_contig14568:3610..38081691480753.7110133-CDS-H-paniculata_contig14568:3610..3808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14568 3611..3808 +
1622929159.1456702-CDS-H-paniculata_contig14568:6354..64981622929159.1456702-CDS-H-paniculata_contig14568:6354..6498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14568 6355..6498 +
1691480753.7233243-CDS-H-paniculata_contig14568:6354..64981691480753.7233243-CDS-H-paniculata_contig14568:6354..6498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14568 6355..6498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14568.2736.1prot_H-paniculata_contig14568.2736.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14568 3611..6498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14568.2736.1

>prot_H-paniculata_contig14568.2736.1 ID=prot_H-paniculata_contig14568.2736.1|Name=mRNA_H-paniculata_contig14568.2736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MGIVLSRVFQALFGSKEVRILILGLDNAGKTTILYRLQNEADDNIQTIPT
IGFNVETLQYKNIKFQVWDLGGQTSIRPYWRCYYPNTDAIVFVVDSSDRE
RMSIAKQELMAMLE
back to top

mRNA from alignment at H-paniculata_contig14568:3611..6498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14568.2736.1 ID=mRNA_H-paniculata_contig14568.2736.1|Name=mRNA_H-paniculata_contig14568.2736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2888bp|location=Sequence derived from alignment at H-paniculata_contig14568:3611..6498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGATCGTACTTAGCCGAGTGTTCCAAGCCCTGTTCGGATCGAAGGA GGTCCGGATTTTGATCCTGGGGCTCGACAACGCGGGAAAGACAACCATCC TCTACCGCCTGCAAAACGAGGCGGACGATAACATCCAGACCATCCCAACC ATTGGGTTCAATGTGGAAACCCTCCAGTACAAGAACATCAAGTTTCAGGT GAATTTTCTGATTTCTTTTCTTTCTTTTCGTAGATGCCAAAGAATTTGTT TTTGATGAATGTGGAGATCCAGCACGCAGTAGAAGAAAACGAATTGTTTC GGTAAAGTCTGGATTTTTTTTTCTTACCGCTTCCATCCATTGGGTTTTTC ACCGTGGAGACCCCCTACCAGCATAACTGAAACGCCGAGTTCTAGACTCT AAATATTGGGGAGAAAACCCTCCACAACAAAAAGTAGACTGTAATTTTTT AGAACTTACATATCGAGTTTCGATCGAGACCGTAAAGTGCGAGAATATCA GAATGTCAAGTTTCAGCTTGTTCCCGTTATTTCCTTTTTTTGGCGGTGAT ACACGTTGATTGTACAAAGGGCTACTTAGTAGTGCGAGGACTCTAGAACT CTACTGTTTTATCGGGCTATGCTTTAGAAGAAAGTACAGTAAGAGAGCAT TAAGCCTGACAATTTGGGCACCAGGGTGAGCTGCTTCGGAAAAAGCATAA AATTTGACAAAATCTAGTCAAGTGCTGCCGTCCTTGCGTGGAGACTCGTG GCAAGTCTCTCCATCTGCGCAGTACGTTGCTGTCTGTTGGACTGACTTGT CTATCCGAGGAGTTACGCATCCTTATCACCGAATCATTTCGTACCCCCCC CCCTGTTTGACTGCCCCATCCTCCGCGGACGCGTGGTCACACAAGTGTAA CTACTCCGACATGAAAATATGAGTATGCCCTCTCCCCCCCCCTCTGTTTT GTTGCAGTTAGGGATTAGATTTCAGATCGGGATATTGTGAAACCGGTCCC CCCGAAACAGTCAAGGTTCCAAGTTTAACATACATTTATTGTAGAACAAA CAGCGTAGCAGTACACGAACATTGCTGCATTGTCGGAGTCTCCCGAGTAT TAATACGCTCGTGTGTCGTTTATACCGTGGAGGTGAGAAAGCTTTGAAGA AATAGAGGGGAGGAGGGCTGCCGTCATCCTATGTTCAGCATACGAGCACT GCTACTCCCTCTCCCTTTCGCGCAAACGTGTTTTCAAAACTGGCGTTTAA TACAGATGGAACGACTTGGTGTTGAAATGCCCGAAACATAATTGGTGCCC TACGATTCACGTGATGGTTTTCTTGCGGAACGATGTGCGTCCACCCCGCG CTTTGTCAGTAGTTCGAGCATCACAATAAAGTTGTTTTGTCAAAAAGGAC GAGCAATTTGAAATTGGGTGGTCGCCTCACGGACCGCGTTCTTGGCGTTG TCCACGAGAAGAGAACCAACAAGAAAGTAAACTACGCGTAAGATAGCACA CAAACAGTGTTTCACAGGTCGGGTGCTACTTTCATTTTCATGGAACCTTT GATCTTTACTCAACCTTGATGCTCAGAATTGAAAAAAAAGAAAAAAGAGT GAGAAGGTGCGGTCATACTCTGGAATTGAACAGTAAAAGAAGGATCTTAT TTTTTGTGCTATAGAATGACAAGAGCAGGTTTCGGAAAACGCCAAGTGCT CTCGTGCCATCATGAGTCATATTCCAAAAATCGCGATGAGTTTTTCTTGA CACCGATCGATCGACCTTGATTCGGGGTGTGCAACGTGTGCGCCCTTGTC GCAAGAAAATATTTTGTGCAACCAGACAAGTCCAGACCACAATCGCTTGA ACTCCCCATAGCCACGAGTGTACTGTAGCATTCTTGACGCTCCATCGACA ACGGACAGCACATTCTACTTTTCATTGCCGACGTTGTAAACATCGCGAGT GCACACCATCTTGAGGTATAACAAATATCCGCTGAGTGACAAGTGTCGCC GTGTTGAACCCTCTGTGGCAGCCTAATGACTCCTGATCAGCTTTGCAAAG CTTCTCTATATTTATCATGAAACAAGTTTGGTGTTCGCCCGGACCCACTC CGCGCTAAAGCTAAGTCAAGAAGGCCCCTACGGTAAAATGAGCGATCGAA CTTTCGGCCTGGAAAGACTCAGACCAGACGATTGTCTAGAGATAGTTTAA CGCGATCTGTAGACGTATTCAGTTCTTCTAGGTAGGCCACGGCTCTTATG GCTGCGGGGTGGCATGTACCCATATCAGACCCTCCCCACCTCAAATCGTT TCGTGTCACGTGATGGAAAATACTTGAATAAAGAGTGTAAAATGTTTGAC AGGAACGTGATGATGATTTCATTATTAGCCTTACAGGAAGGGGTGTTCAC CGACAAATATCAAGTGTAAGCAGAGGATAAACAAACCCTCTGCTTACAAT GGTATCGTCTGTAGAAACCCCTGATCATTGGATAACAAGGTGATTTCGAA TCTTGATCTGTTTCATATGGCAATTGATGAGAAACTCGTCACCGGTATGG CGAAAAAATCTTTGTTTTTGGCCTTGACGAGGTCAGGTTCCTTGAGGGTT AAGGACTATAAGATGAAATAAAAGTAATGAGTCGAAAAGTCCCGCTCTGT TCACCTCGTTGGTTGATATTTCATCCATCACCCCATATAGCTAGCCTCTC TATTAATCTTTTATCTCATCTTTTTGCGGGGAAAAAAATCGCAGGTATGG GATTTAGGCGGGCAAACGAGTATCCGGCCGTATTGGAGATGCTACTACCC CAACACAGACGCTATTGTGTTCGTCGTTGACAGCTCCGACCGAGAGAGGA TGAGCATAGCGAAACAGGAGCTCATGGCAATGCTTGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14568:3611..6498+

>mRNA_H-paniculata_contig14568.2736.1 ID=mRNA_H-paniculata_contig14568.2736.1|Name=mRNA_H-paniculata_contig14568.2736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig14568:3611..6498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGATCGTACTTAGCCGAGTGTTCCAAGCCCTGTTCGGATCGAAGGA
GGTCCGGATTTTGATCCTGGGGCTCGACAACGCGGGAAAGACAACCATCC
TCTACCGCCTGCAAAACGAGGCGGACGATAACATCCAGACCATCCCAACC
ATTGGGTTCAATGTGGAAACCCTCCAGTACAAGAACATCAAGTTTCAGAT
GGGGATCGTACTTAGCCGAGTGTTCCAAGCCCTGTTCGGATCGAAGGAGG
TCCGGATTTTGATCCTGGGGCTCGACAACGCGGGAAAGACAACCATCCTC
TACCGCCTGCAAAACGAGGCGGACGATAACATCCAGACCATCCCAACCAT
TGGGTTCAATGTGGAAACCCTCCAGTACAAGAACATCAAGTTTCAGGTAT
GGGATTTAGGCGGGCAAACGAGTATCCGGCCGTATTGGAGATGCTACTAC
CCCAACACAGACGCTATTGTGTTCGTCGTTGACAGCTCCGACCGAGAGAG
GATGAGCATAGCGAAACAGGAGCTCATGGCAATGCTTGAGGTATGGGATT
TAGGCGGGCAAACGAGTATCCGGCCGTATTGGAGATGCTACTACCCCAAC
ACAGACGCTATTGTGTTCGTCGTTGACAGCTCCGACCGAGAGAGGATGAG
CATAGCGAAACAGGAGCTCATGGCAATGCTTGAG
back to top