mRNA_H-paniculata_contig1456.2732.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1456.2732.1
Unique NamemRNA_H-paniculata_contig1456.2732.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1456.2732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1456contigH-paniculata_contig1456:18891..24739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size981
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1456.2732.1prot_H-paniculata_contig1456.2732.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1456 18891..24317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.832309-CDS-H-paniculata_contig1456:18890..192041622929158.832309-CDS-H-paniculata_contig1456:18890..19204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1456 18891..19204 -
1691480753.6263547-CDS-H-paniculata_contig1456:18890..192041691480753.6263547-CDS-H-paniculata_contig1456:18890..19204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1456 18891..19204 -
1622929158.843796-CDS-H-paniculata_contig1456:24073..243171622929158.843796-CDS-H-paniculata_contig1456:24073..24317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1456 24074..24317 -
1691480753.6347077-CDS-H-paniculata_contig1456:24073..243171691480753.6347077-CDS-H-paniculata_contig1456:24073..24317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1456 24074..24317 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.8636372-UTR-H-paniculata_contig1456:24317..247391622929158.8636372-UTR-H-paniculata_contig1456:24317..24739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1456 24318..24739 -
1691480753.6425679-UTR-H-paniculata_contig1456:24317..247391691480753.6425679-UTR-H-paniculata_contig1456:24317..24739Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1456 24318..24739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1456.2732.1

>prot_H-paniculata_contig1456.2732.1 ID=prot_H-paniculata_contig1456.2732.1|Name=mRNA_H-paniculata_contig1456.2732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MSDNSVKREKPEPPLISGNDSKRIKPARAAANAAGGGGASVSSVAPAASA
AQGAKRATRASTGAPIALTAKGSLYRAHKDTGASSDESEPPPNPRRRSHS
PNSAPMKSPVRPSSSSNSKTGGASSSNKAGYSSSSGRGGGGGGGGGGGGA
ATASSGGASGSGEGTNSAVAAGSGSRKGNNKRASAG
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mRNA from alignment at H-paniculata_contig1456:18891..24739-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1456.2732.1 ID=mRNA_H-paniculata_contig1456.2732.1|Name=mRNA_H-paniculata_contig1456.2732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5849bp|location=Sequence derived from alignment at H-paniculata_contig1456:18891..24739- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACACCAAGCACCAACACATCCAACACCAGCTCGTGGTGATACATAAGC
CTTCAAGTGTATAAGCGAGAATCCAGGTGTTGTCGTGTACGGCTGGGGTC
GGCTTCAATCCGTAGTAAGCGAGATTTGTTCAGTGTGTCCTGTCAACGAG
CGGGCTCGCTCTGTCGACAGTTCATTCAAAATCCACATACAGCACTGGTC
CATCACACCAGTGCAGTGTGGACATACACACGACACACATTTCACACAGG
GTGTATAAAACACACATTTACACACATATACACCAAACCTCCAGCGTACT
ACTACTACATCGCCCGCATAGACCAAGACAGGAAGAACAAAGGACGGCAC
CAGAAGAGAATCGGGGTGTGTATAGGGCTAGGGTGGAGTTGGGTTTCGTC
TCCTGGGTTTACTTTGAGCTCGATGTCGGACAACAGTGTGAAACGTGAGA
AGCCGGAGCCGCCCCTGATTTCGGGAAACGACTCCAAACGCATCAAACCT
GCTCGTGCTGCTGCTAATGCTGCTGGTGGCGGAGGGGCGAGTGTATCGTC
AGTTGCACCAGCAGCATCGGCCGCCCAGGGTGCCAAGCGGGCAACTCGAG
CTTCCACCGGGGCGCCCATTGCCTTGACAGCTAAGGGATCCCTCTACCGG
GCACACAAAGACACGGGTGAGCCACATCTGCTGCTGATAGGGGGCGTGGA
AAAGAGCCACGGGTGTTTTTTTCGACCTGAAAGAATGATCATGTTTATTC
ATGAGTACACACAAAATGGGCCGGAAACACAAGTTTTCTCGCAGCTGGTT
CAAATTGTGAATTTTCATATGAAAGCAGCCAACCAAAATATGTACTACTG
TAATGACATGGCATCCTCTTCAGCCTGGCTACGAGGCGCACCTCACTTGT
TGTATTTCTTTCCTTGAGAATGCTTCATTTGTGTGTTTCGTAGTTTATAC
ATGGCTTGAGAATATGCAACACGTGCCATCTCGGCAGTGATGATAATATA
TCTTGATGTGATACGGGAACGCGTCACGTTACCTGGGCTTTACTCTAGGG
CGGGGTTTTTGCAGGAGGATGGGTCAGTTGCGGTGTATGTATGTATTTTC
AAAGCCATTTCGTAGTGCGAATTATATCACAATTCAGAGAGAAGACGACC
GCAGCAGGTAGGTTATGTGATGTGTGAGTAAGTTGGGCGAAGATTTATCC
GTACACGACGGCGCGATACCGAGCGTCGCATATTGCGTGGCGTTTCGAGA
AAGGGCCCACACCAGTTGAGGTTCTCTTGCCTGAGCCTAACGCTGCTGCT
GCGTTTGTGGGCAATTGTCTGTTTATTGGTTTTGTTTCATGTTCGAAGCA
ACGATCACGTGATGATAATTTTGTAGTTTGTTGACGGTTTCCCCGCTGAA
AACGCACATGCATTTTGATTATTGTATTTTGGTACTGACTGTATGCGTCT
CCAGTGTATATATACAAGATGGCTTGAGCTCAATCAGACACATCTAACGC
ACATCATGCATTCAGCAGGGTTAGGGCCGTGTGTCGTTGGCATCATGAGA
AATATGAGGCAGAGGTGGATAATCGACTTGAAGGGTGTCTTAGGCCCCTT
TCACCTCAGATTTTTATTGGTGGTCGTTGTACTATATTCCGCAAGGTCAG
TCGCACAAGGAGGATTCTACAATAGACAGTGCACCACCCATACAAAGTTT
TACTTGTAAAAAGAGAACCGAGGACCCATGCGTGGGCATAAAAAAGCTAA
TCCTTTCGGAAGAGAATATTCAGCAATTTTCCCCTCGACATAATTTGCAG
TATAAACATTTATCTTTACTGACTCTTGTATTGTGGATATACACCGCTTT
GAACGCATGTCATGCAAACCAAAACCCTGTAGGGCCCATAATAATGAATG
GAAAGAGTCGAGGGAGAGAGAGGTGGAGGAGAGTTGGCACATAATGAAAT
GATGGAGATCTAGTAATGATTCATCAACAATATGATGATTACCTCCCTGC
GGCTGTCATTTAGTATCTTGTAGCAAGATGTATGTGTGTATGTATGTATG
TCTACACCATGTTACCGTCTGTTGTTCTTGGATATACATAATGGTGGATA
TTTTCTGGCCTATGCAACGTACATGGTTTTAGGTCTGCTGTCTGTTGCTG
GCGACTTCTTCAGCCAGTAAGTAGCAGTACACCCGAATCTTATTTTAGCG
ACTGTGTCTGTGATGACGTTTACACATTCAATAGACAATCAATTGCTTCG
TTTTATTGTTTAGTAGGATGGTGTAATGTTAAGTGAGCTCCCCGCTCTTG
CTAAGCTCGAGCACGAAGAGTTCTTCCTCCCCTGGAGCTTTTTCTGATGT
CGGAGAATTGCTGCAGCACTAATATCCCTGCCCGGCTGCTGGCTACCCCG
CCCGTGCCACGGCAGATCAGATCCCCCCAACCAAAGTGCAAAGTTATTTT
CTATTTTCTGATATTTTTTGGTGGCCCTGAAAGATTCCCCGCACCTACAC
AGTGCAGTGCTGTCCGTGCTGCCTCTCGCCGGCACTCTCTCCTGCGTGTT
TTATGTAACTGTACCACTCCTCGACACTGCTGCGCTTTAGATGCCGCTGC
TGCTGCTGACTCAACCTGTCGGTGAACGCAACACTATCGACAATGCCTAC
TACATTGATCATAAAAGGGGGGGTGAACAGGGACACGCATTGGTTGATAC
ATTTTGGCGTTCTGTATATTCTGTTGAATTATTTATACCGTTGCCATCAG
CATCGGGCAGTCAGTCAGTACTTATTATCATCCATCAGTCCATCACCTCG
CGTGTTCGTGTTTCGTTGGTCCCAAAAGCGGGGCGAATCGAAGGAAACAA
ATGACGTCAACACATATATATAAGCCACAGCAGTACGGTTGTGCCCCCGT
AGCCACCTTCATAGGAAGCCGCCACTCACACCAGCGTGTATTCGCATGCT
TGTCGCTCGCTGCCAGCGCCTTTTCGGCATATCGTAACTGATAATCTGAT
GAATCCAAGATATTTTATTGTAGTGATTTTTATAATATACAAAGTCCTAT
GGAAATATTCAAGATTTTTAATTCTCGGACGCCGGTCTTCACGGAATCCA
TGGCTGCTCCCTTGACCTCATAAAGAACAGGGAAAATGTAACATCAATGA
CGTAAGCCAGCACACAGCATTAGACAGGGAGTTGGCACAGTCCTATCCCA
CCGACTTTCCACACTTGCAGCAGCAACGCTCATTTCGTCATTAGTATTAA
ATTCCGTGGGCTTTGGGGAGATTATTTCGGACCAAAAATTGATAATCTGA
CCAATGAATAAATGTCGAAGTGTGAGCACTGCTGTAATCGTTGTACACTA
AATAGAGACCAGGAAGTATGTCAACTAACTCCCTGTTGGTGATGGATGTT
CGCCACTAATAATGCGACAAGTCGTGCCTTTTGTGCATCATTTCTGCAGC
AAATATATTTGTATTAATAGACTGACTGAGTAACAGGAGTCAAAGTCCCA
TAGTGTATCCATCCCCGTGATTATGGAGGTCTGTAAGCGTCGTTTTTCCC
AATCCTTTTTACGTGACCGGCAAGGCCGTAAAATATGAATTTGCCCAACC
CCGAACCGGGCTAGTTTTCACGTGGCCATCCTCAAGCCGGCCCCGCGAAC
CGGTTCGTAACATAGTGATCGTGTGAAAAAATAAAACGTTCTTGTGTTTT
TTACTCGATTTCTCGAACACAGGTTCGCCCGTGGCGCTAAAGTTGTGTTA
TTGGACAGATGTCGACGACCCTGCTCAGGTGGATATGCATATTCTACCGT
GGGATGTCTTGGTTTTGGAGAAAATCGAATTAAAAAAATATATATATATT
CTTCCCATGACTGGCCAATAAATTCTGAAATGACGACAGCAAACCGGGAA
AAAATCGGACATGAGCATCTGCGAAACAGGAAAGATGATTGGATGACCAT
CCGCAGACCGATTCATAACATGAGTATGTGAATAACATAAGCGTAGTAAT
AACCCGGTCATGGCCAAAGCCTTGGTGTTTGCTTTTTTTGAGCTGAGAAT
TAGTCAGGTGTGTGATTCCACAGAGGACGGCGCCAGAACGGCCAACATGA
GCTTGAAATCTTACTTTGAAAAGCCATACTTGGTCATCATTCATTTCTGA
TCCTTGTTCATGGCTGAAAGTATCCCCAGACGGAGTCGCATAGGGAAAAA
TGGAACAACTCATTTATGAGAGAAAACGCGGCGAAATGTCCATGTCTGAC
TCATGCAACACCGTCTGACTCCTGCAGCGGTGCAAGGTATTCAATGCTCA
GTGTTCTTTTTCCAGCCTTGCGGTCATTTTCCAAATCTTTGAACACATGG
TGCGTGTTTTTTCCTGTTTTGAATTAACCTATTGTTGTCGTAGACTTGCA
GATTGTTCACTGACCTTGTTAGTTGGTCTCTTGCCGAGTTAAGAATTTAT
GCTCTGGTCATTTTAATATAAGTAAAGCGTAACATCATTCAGTTACCGTC
TGATAAAATCAGAATTGCAAGTTAACCTTCAAGCACACTCTAACCGATTT
TACACTTTTTGGCCTCACCTAAAGTTTACATCACTTATCTAGGTGTAGTC
GCTGTGTTTGTTTTACGGATTGATTGGCAGCGGGCACACATGTGGGCATA
TAAAAAATCGAAGATAACGTGTGTGCCTCCGTTCTTCTTTTTGATTTTGT
TTCATTTATTGATATTTACTAGATACAAACAGCTAGACCATTTATTACCA
ACGGAAATAACCACCGCTTGGCGCTGAAGTGATTTTGCTACATATGCAAA
CGATTTTTTATTACATGAGCGGCCGTTTTACCGGTCTTGGTGTTTCTCTT
GTAATGCAGCATTTCGTTGACGTGTGGTCCTGATTATCTAATACGGTAAG
GCGGTCATCGTTTTTACGAGGCAGTTTCTCATCTCTGTACTCGAGCAACC
CCTGAGCAACGGACCTTCATGCAAAAGTAGCCAGCCACTGCTAGTGCTGC
GAGTCCAGGAGTCGAGCATAAGCATGTACTGCACGGGTTGGCGAGGCCGT
GGTCATAGTCTACTAATGAGTCTTCCAACGACCGAGGGGGGGTTGATCCG
TTAGGAGGTATCTGCCTGCCTGGGACGATGTAGGGGTTTCGCCTCCTCCA
TACTATTTCAAAGGACGCGGCCACGAGGGAGAGAATCAAGCAAATGACAG
ATATAGATATTATTCATGGGTTGCACGAATCGTCAATGTTCCGCGAAGAA
TTAGCCGCCGCTGACCTCCTAGGGCTAACGAAATGGCAAGTCCACTCCCT
CCCGATCGTTGAACTACTAGTAGTTAAATGTCTTCCTGTATGGGCAGCCG
TCTTCCAACATTTTTTTACTGCTAAATACTAGAGCTAGTGTATCGATGCG
TTCTGCGTTTTGACCGCTTTTTTTTCTTCTTGTTGTTTTCCCTCCTTTTT
TGTTGTTATTTTTTTACCTCGATTTCTTTTCCCTCTCCCTTATCATTCTC
CTCTTCGTTCCCCTCCCTTCCCTTCTCTTCCCCAGGAGCCTCCTCAGATG
AATCAGAGCCTCCCCCCAACCCCCGGCGGCGGAGCCACAGTCCCAACTCA
GCCCCGATGAAGTCGCCCGTGAGACCCTCCTCGTCATCCAACAGCAAGAC
CGGAGGGGCGAGTTCCAGCAATAAGGCGGGGTACAGCAGCTCCAGCGGCC
GTGGCGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCGGCGCTGCGACCGCC
TCTAGCGGCGGAGCCTCAGGCAGCGGTGAAGGGACTAACAGTGCTGTCGC
TGCCGGCAGCGGCAGCAGGAAAGGAAACAATAAGCGGGCGTCGGCGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1456:18891..24739-

>mRNA_H-paniculata_contig1456.2732.1 ID=mRNA_H-paniculata_contig1456.2732.1|Name=mRNA_H-paniculata_contig1456.2732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig1456:18891..24739- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGACAACAGTGTGAAACGTGAGAAGCCGGAGCCGCCCCTGATTTC
GGGAAACGACTCCAAACGCATCAAACCTGCTCGTGCTGCTGCTAATGCTG
CTGGTGGCGGAGGGGCGAGTGTATCGTCAGTTGCACCAGCAGCATCGGCC
GCCCAGGGTGCCAAGCGGGCAACTCGAGCTTCCACCGGGGCGCCCATTGC
CTTGACAGCTAAGGGATCCCTCTACCGGGCACACAAAGACACGGATGTCG
GACAACAGTGTGAAACGTGAGAAGCCGGAGCCGCCCCTGATTTCGGGAAA
CGACTCCAAACGCATCAAACCTGCTCGTGCTGCTGCTAATGCTGCTGGTG
GCGGAGGGGCGAGTGTATCGTCAGTTGCACCAGCAGCATCGGCCGCCCAG
GGTGCCAAGCGGGCAACTCGAGCTTCCACCGGGGCGCCCATTGCCTTGAC
AGCTAAGGGATCCCTCTACCGGGCACACAAAGACACGGGAGCCTCCTCAG
ATGAATCAGAGCCTCCCCCCAACCCCCGGCGGCGGAGCCACAGTCCCAAC
TCAGCCCCGATGAAGTCGCCCGTGAGACCCTCCTCGTCATCCAACAGCAA
GACCGGAGGGGCGAGTTCCAGCAATAAGGCGGGGTACAGCAGCTCCAGCG
GCCGTGGCGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCGGCGCTGCGACC
GCCTCTAGCGGCGGAGCCTCAGGCAGCGGTGAAGGGACTAACAGTGCTGT
CGCTGCCGGCAGCGGCAGCAGGAAAGGAAACAATAAGCGGGCGTCGGCGG
GAGAGCCTCCTCAGATGAATCAGAGCCTCCCCCCAACCCCCGGCGGCGGA
GCCACAGTCCCAACTCAGCCCCGATGAAGTCGCCCGTGAGACCCTCCTCG
TCATCCAACAGCAAGACCGGAGGGGCGAGTTCCAGCAATAAGGCGGGGTA
CAGCAGCTCCAGCGGCCGTGGCGGCGGAGGCGGAGGCGGAGGCGGAGGCG
GCGGCGCTGCGACCGCCTCTAGCGGCGGAGCCTCAGGCAGCGGTGAAGGG
ACTAACAGTGCTGTCGCTGCCGGCAGCGGCAGCAGGAAAGGAAACAATAA
GCGGGCGTCGGCGGGA
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