mRNA_H-paniculata_contig14557.2729.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14557.2729.1
Unique NamemRNA_H-paniculata_contig14557.2729.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 2.100e-69
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDKK++NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 196 bits (498), Expect = 8.660e-63
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAGDK K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.340e-61
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.970e-61
Identity = 101/118 (85.59%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKSNK--RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKK G+K K+ K  R+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 190 bits (483), Expect = 9.690e-61
Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 192 bits (489), Expect = 9.080e-60
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGD-KKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 187 bits (475), Expect = 1.710e-59
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAKAPKKA    KS KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 183 bits (465), Expect = 6.720e-58
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A APKKAG K+ S KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 182 bits (461), Expect = 2.650e-57
Identity = 101/120 (84.17%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKA--GDKKK-SNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AKA KKA  GDKKK S KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
[Close]
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.100e-56
Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKAGD--KKKSNKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+ +KA KK  D  KK+S KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14557.2729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI2.100e-6997.41Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA8.660e-6387.93Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA1.340e-6188.89Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA3.970e-6185.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU9.690e-6185.34Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJT3_9STRA9.080e-6088.89Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC1.710e-5985.34Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA6.720e-5885.34Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS2.650e-5784.17Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2P1D6_9STRA3.100e-5682.35Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14557contigH-paniculata_contig14557:5955..6305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.2e-53
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.592488-CDS-H-paniculata_contig14557:5954..63051622929158.592488-CDS-H-paniculata_contig14557:5954..6305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14557 5955..6305 +
1691480753.5150154-CDS-H-paniculata_contig14557:5954..63051691480753.5150154-CDS-H-paniculata_contig14557:5954..6305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14557 5955..6305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14557.2729.1prot_H-paniculata_contig14557.2729.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14557 5955..6305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14557.2729.1

>prot_H-paniculata_contig14557.2729.1 ID=prot_H-paniculata_contig14557.2729.1|Name=mRNA_H-paniculata_contig14557.2729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGDKKKSNKRLESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
back to top

mRNA from alignment at H-paniculata_contig14557:5955..6305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14557.2729.1 ID=mRNA_H-paniculata_contig14557.2729.1|Name=mRNA_H-paniculata_contig14557.2729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig14557:5955..6305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAGACACCCTCGAAGAAGTCCGCGAAGGCCCCCAAGAAGGCAGG
AGACAAGAAGAAGAGCAACAAGAGGTTGGAGTCTTACTCGTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCCGACACTGGTATTTCCAAGCGCGGG
ATGTCCATCATGAACTCGTTCATCAACGATGTTTTCGAGCGTGTGGCTGG
CGAGTCTGGCAAGCTGACCCGCTACAACAAAAAGGCCACTCTCTCGTCCC
GCGAGGTGCAGACGGCGGTACGTCTGATGCTTCCTGGAGAGCTAGCCAAG
CACGCGGTGTCTGAGGGCACCAAGGCCGTCACCAAGTTTACTTCGTCCTA
G
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14557:5955..6305+

>mRNA_H-paniculata_contig14557.2729.1 ID=mRNA_H-paniculata_contig14557.2729.1|Name=mRNA_H-paniculata_contig14557.2729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig14557:5955..6305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAGACACCCTCGAAGAAGTCCGCGAAGGCCCCCAAGAAGGCAGG
AGACAAGAAGAAGAGCAACAAGAGGTTGGAGTCTTACTCGTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCCGACACTGGTATTTCCAAGCGCGGG
ATGTCCATCATGAACTCGTTCATCAACGATGTTTTCGAGCGTGTGGCTGG
CGAGTCTGGCAAGCTGACCCGCTACAACAAAAAGGCCACTCTCTCGTCCC
GCGAGGTGCAGACGGCGGTACGTCTGATGCTTCCTGGAGAGCTAGCCAAG
CACGCGGTGTCTGAGGGCACCAAGGCCGTCACCAAGTTTACTTCGTCCTA
GATGGCCAAGACACCCTCGAAGAAGTCCGCGAAGGCCCCCAAGAAGGCAG
GAGACAAGAAGAAGAGCAACAAGAGGTTGGAGTCTTACTCGTCGTACATC
TACAAGGTGCTCAAGCAGGTGCACCCCGACACTGGTATTTCCAAGCGCGG
GATGTCCATCATGAACTCGTTCATCAACGATGTTTTCGAGCGTGTGGCTG
GCGAGTCTGGCAAGCTGACCCGCTACAACAAAAAGGCCACTCTCTCGTCC
CGCGAGGTGCAGACGGCGGTACGTCTGATGCTTCCTGGAGAGCTAGCCAA
GCACGCGGTGTCTGAGGGCACCAAGGCCGTCACCAAGTTTACTTCGTCCT
AG
back to top