mRNA_H-paniculata_contig14557.2728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 217 bits (553), Expect = 3.840e-71 Identity = 116/124 (93.55%), Postives = 119/124 (95.97%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKKVVKK 372 MSGKGKGGRG KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIA GGVLPNIHAVLLPKK VKK Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 215 bits (548), Expect = 1.310e-69 Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKKVVK 369 MSGKGKGGRG KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIA GGVLPNIHAVLLPKK VK Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 204 bits (520), Expect = 6.300e-66 Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKK 360 MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIA GGVLPNIHAVLLPKK Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 203 bits (516), Expect = 1.520e-65 Identity = 107/120 (89.17%), Postives = 113/120 (94.17%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKK 360 MSGKGKGGRG KK +RSAKAGLQFPVGRIGRF+KQGKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIA GGVLPNIHAVLLPKK Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 204 bits (520), Expect = 3.220e-65 Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKK 360 MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIA GGVLPNIHAVLLPKK Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.750e-64 Identity = 103/118 (87.29%), Postives = 114/118 (96.61%), Query Frame = 1 Query: 7 GKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKK 360 GKGKGGRGD KK+V++SAKAGLQFPVGR+GRFLKQG+YA RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA GGVLPNIHAVLLPKK Sbjct: 5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKK 121
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC) HSP 1 Score: 199 bits (507), Expect = 6.650e-64 Identity = 100/121 (82.64%), Postives = 113/121 (93.39%), Query Frame = 1 Query: 7 GKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKKVVK 369 GKGKGGRGD K++ + S+KAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA GGVLPNIHA+LLPKK +K Sbjct: 10 GKGKGGRGDKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKKTIK 130
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 199 bits (505), Expect = 7.990e-64 Identity = 104/120 (86.67%), Postives = 113/120 (94.17%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKK 360 MSGKGKGGRG+ KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA GGVLPNIHA+LLPKK Sbjct: 1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 199 bits (505), Expect = 7.990e-64 Identity = 106/123 (86.18%), Postives = 113/123 (91.87%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKKVVK 369 MSGKGKGGRG KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA GGVLPNIHAVLLPKK K Sbjct: 1 MSGKGKGGRG-GKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 197 bits (502), Expect = 3.380e-63 Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 1 Query: 1 MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIACGGVLPNIHAVLLPKKVVKK 372 MSG+GKG KK+V+RSAKAGLQFPVGR+ R+LK+GKYA+R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG+VTIA GGVLPNIH+VLLPKK KK Sbjct: 1 MSGRGKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14557.2728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14557.2728.1 >prot_H-paniculata_contig14557.2728.1 ID=prot_H-paniculata_contig14557.2728.1|Name=mRNA_H-paniculata_contig14557.2728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp MSGKGKGGRGDSKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVback to top mRNA from alignment at H-paniculata_contig14557:5212..5589- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14557.2728.1 ID=mRNA_H-paniculata_contig14557.2728.1|Name=mRNA_H-paniculata_contig14557.2728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig14557:5212..5589- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14557:5212..5589- >mRNA_H-paniculata_contig14557.2728.1 ID=mRNA_H-paniculata_contig14557.2728.1|Name=mRNA_H-paniculata_contig14557.2728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig14557:5212..5589- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |