mRNA_H-paniculata_contig14555.2726.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14555.2726.1
Unique NamemRNA_H-paniculata_contig14555.2726.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14555.2726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14555contigH-paniculata_contig14555:1345..2663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size908
Cds size669
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14555.2726.1prot_H-paniculata_contig14555.2726.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14555 1995..2663 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.4399114-UTR-H-paniculata_contig14555:1344..14081622929158.4399114-UTR-H-paniculata_contig14555:1344..1408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14555 1345..1408 +
1691480753.4475079-UTR-H-paniculata_contig14555:1344..14081691480753.4475079-UTR-H-paniculata_contig14555:1344..1408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14555 1345..1408 +
1622929158.460143-UTR-H-paniculata_contig14555:1819..19941622929158.460143-UTR-H-paniculata_contig14555:1819..1994Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14555 1820..1994 +
1691480753.457689-UTR-H-paniculata_contig14555:1819..19941691480753.457689-UTR-H-paniculata_contig14555:1819..1994Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14555 1820..1994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.4752254-CDS-H-paniculata_contig14555:1994..26631622929158.4752254-CDS-H-paniculata_contig14555:1994..2663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14555 1995..2663 +
1691480753.4669638-CDS-H-paniculata_contig14555:1994..26631691480753.4669638-CDS-H-paniculata_contig14555:1994..2663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14555 1995..2663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14555.2726.1

>prot_H-paniculata_contig14555.2726.1 ID=prot_H-paniculata_contig14555.2726.1|Name=mRNA_H-paniculata_contig14555.2726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=223bp
MSTTIAAAAATTSDATPIATSAPAANAPAPVPAAPVSAPVTATAATATMT
TVAIAAATAASQEQQEQQEQQENNIVAAAPAPATVVDEAALYAALVALQA
SVNGSVHDSAARHCQLERDSLQRTLAASSRSNRNLLEFAETGGDSQGKGG
DEEESRVCPGEDDVWHSSSGGGAEPLPRLSQAALPALRVSGKLLVLERGG
SCGGGMLRKKEREGWEEGKVEKA
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mRNA from alignment at H-paniculata_contig14555:1345..2663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14555.2726.1 ID=mRNA_H-paniculata_contig14555.2726.1|Name=mRNA_H-paniculata_contig14555.2726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1319bp|location=Sequence derived from alignment at H-paniculata_contig14555:1345..2663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCAGCCGATGGGATGCGATGGAGATTTCCCGACATCAGGCGGAGATGA
GACAGTCAGGGGTGGTGAGTGTCGGGTATAATTGTGTATTCTATTTATTG
AAACAAATAATATTCTTTGAGACTGCTAGGTGAAATGAGTTTGATCGACT
TATTGTTGGTGTTGCTGTAGAGCTTTATATGTCCATACATGTCAATATGT
GCAATGTGCCGCTTCTTTTATTGGGAGAGGGAGCGCCGTTGTTCAGAGCT
GTGCATGGAATGTTTACGATAAATGGTGTATCGGTCTGGTTATTTTGTTG
AATTAGAGCACACCTGTATAGTGTCCGAGATTTTCTGTGCTCTCTCCTTG
CCTGGTCTTTCGTTTCTGTAATATCACGTCCAGTTCATACCAAATCTCCC
GCTTCTGCTGCCGATTCGCGTGGGGCCTTTCCCTCGTCTTGCGTACTATG
CGCCACGATACCCGGGACACACCAGCTGTAGTTTTCCGTCTACCCGAACA
CCATGTCTGGAAGCGGACCAGATCTCATGACTCCTTTTACCCCACCACCA
ACCCGCCTACGGACACTTTACCCAGGAGAACGGCTCGTCAAGCGCATTCA
CCGCTATCACCGCGAACTCCACGAAGGAGTCGGGCAGTCACGCCACCACC
ATGAGCACCACAATCGCCGCCGCCGCCGCCACTACTAGCGATGCAACACC
AATCGCTACCTCGGCCCCGGCTGCTAATGCACCAGCACCAGTGCCAGCAG
CACCAGTTTCTGCCCCGGTCACCGCAACAGCCGCGACAGCGACGATGACA
ACAGTAGCGATAGCGGCGGCGACCGCCGCCTCACAAGAACAACAAGAACA
ACAAGAACAGCAAGAAAACAATATCGTTGCTGCTGCCCCCGCCCCCGCCA
CTGTCGTCGACGAAGCGGCACTGTATGCAGCACTAGTCGCACTGCAGGCC
AGCGTTAACGGTTCTGTGCACGACAGCGCTGCTCGCCACTGCCAGCTCGA
GCGGGACAGCCTCCAACGCACCCTGGCCGCCAGCTCCCGCAGCAACCGAA
ATCTCCTAGAATTCGCCGAGACCGGGGGCGACTCTCAAGGGAAGGGGGGC
GACGAGGAGGAAAGCCGAGTCTGCCCGGGGGAGGATGACGTTTGGCACAG
CAGTAGCGGAGGAGGAGCGGAACCGCTGCCGCGATTGTCGCAGGCAGCGC
TGCCGGCGCTACGGGTGAGTGGCAAGCTTCTCGTGCTGGAGCGGGGTGGC
AGCTGCGGTGGAGGGATGTTGAGAAAGAAGGAACGGGAAGGGTGGGAGGA
GGGAAAAGTGGAGAAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig14555:1345..2663+

>mRNA_H-paniculata_contig14555.2726.1 ID=mRNA_H-paniculata_contig14555.2726.1|Name=mRNA_H-paniculata_contig14555.2726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at H-paniculata_contig14555:1345..2663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCACCACAATCGCCGCCGCCGCCGCCACTACTAGCGATGCAACACC
AATCGCTACCTCGGCCCCGGCTGCTAATGCACCAGCACCAGTGCCAGCAG
CACCAGTTTCTGCCCCGGTCACCGCAACAGCCGCGACAGCGACGATGACA
ACAGTAGCGATAGCGGCGGCGACCGCCGCCTCACAAGAACAACAAGAACA
ACAAGAACAGCAAGAAAACAATATCGTTGCTGCTGCCCCCGCCCCCGCCA
CTGTCGTCGACGAAGCGGCACTGTATGCAGCACTAGTCGCACTGCAGGCC
AGCGTTAACGGTTCTGTGCACGACAGCGCTGCTCGCCACTGCCAGCTCGA
GCGGGACAGCCTCCAACGCACCCTGGCCGCCAGCTCCCGCAGCAACCGAA
ATCTCCTAGAATTCGCCGAGACCGGGGGCGACTCTCAAGGGAAGGGGGGC
GACGAGGAGGAAAGCCGAGTCTGCCCGGGGGAGGATGACGTTTGGCACAG
CAGTAGCGGAGGAGGAGCGGAACCGCTGCCGCGATTGTCGCAGGCAGCGC
TGCCGGCGCTACGGGTGAGTGGCAAGCTTCTCGTGCTGGAGCGGGGTGGC
AGCTGCGGTGGAGGGATGTTGAGAAAGAAGGAACGGGAAGGGTGGGAGGA
GGGAAAAGTGGAGAAGGCGATGAGCACCACAATCGCCGCCGCCGCCGCCA
CTACTAGCGATGCAACACCAATCGCTACCTCGGCCCCGGCTGCTAATGCA
CCAGCACCAGTGCCAGCAGCACCAGTTTCTGCCCCGGTCACCGCAACAGC
CGCGACAGCGACGATGACAACAGTAGCGATAGCGGCGGCGACCGCCGCCT
CACAAGAACAACAAGAACAACAAGAACAGCAAGAAAACAATATCGTTGCT
GCTGCCCCCGCCCCCGCCACTGTCGTCGACGAAGCGGCACTGTATGCAGC
ACTAGTCGCACTGCAGGCCAGCGTTAACGGTTCTGTGCACGACAGCGCTG
CTCGCCACTGCCAGCTCGAGCGGGACAGCCTCCAACGCACCCTGGCCGCC
AGCTCCCGCAGCAACCGAAATCTCCTAGAATTCGCCGAGACCGGGGGCGA
CTCTCAAGGGAAGGGGGGCGACGAGGAGGAAAGCCGAGTCTGCCCGGGGG
AGGATGACGTTTGGCACAGCAGTAGCGGAGGAGGAGCGGAACCGCTGCCG
CGATTGTCGCAGGCAGCGCTGCCGGCGCTACGGGTGAGTGGCAAGCTTCT
CGTGCTGGAGCGGGGTGGCAGCTGCGGTGGAGGGATGTTGAGAAAGAAGG
AACGGGAAGGGTGGGAGGAGGGAAAAGTGGAGAAGGCG
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