mRNA_H-paniculata_contig14553.2725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14553.2725.1
Unique NamemRNA_H-paniculata_contig14553.2725.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14553.2725.1 vs. uniprot
Match: A0A6H5JAC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC9_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.350e-5
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 3 
Query: 1263 IHAPFPGLREACDGCGTLNVSGLGSGIWSCESCSR 1367
            +HAP+PGL  AC+GCGT +VSGLGSG   CE C R
Sbjct:   80 VHAPWPGLHGACEGCGTPSVSGLGSGPTECEHCHR 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14553.2725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAC9_9PHAE4.350e-565.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14553contigH-paniculata_contig14553:4336..5756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.3604167-CDS-H-paniculata_contig14553:4335..46231622929158.3604167-CDS-H-paniculata_contig14553:4335..4623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14553 4336..4623 -
1691480753.428008-CDS-H-paniculata_contig14553:4335..46231691480753.428008-CDS-H-paniculata_contig14553:4335..4623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14553 4336..4623 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929158.391131-UTR-H-paniculata_contig14553:5713..57561622929158.391131-UTR-H-paniculata_contig14553:5713..5756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14553 5714..5756 -
1691480753.4380312-UTR-H-paniculata_contig14553:5713..57561691480753.4380312-UTR-H-paniculata_contig14553:5713..5756Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14553 5714..5756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14553.2725.1prot_H-paniculata_contig14553.2725.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14553 4336..4623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14553.2725.1

>prot_H-paniculata_contig14553.2725.1 ID=prot_H-paniculata_contig14553.2725.1|Name=mRNA_H-paniculata_contig14553.2725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MSGSRIHSIPAAQPRAHPSAMAQDADASGAIGQGNDDEFGLQEIHAPFPG
LREACDGCGTLNVSGLGSGIWSCESCSRIDESQYGETGMKVGGGGV
back to top

mRNA from alignment at H-paniculata_contig14553:4336..5756-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14553.2725.1 ID=mRNA_H-paniculata_contig14553.2725.1|Name=mRNA_H-paniculata_contig14553.2725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-paniculata_contig14553:4336..5756- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTCAGTCAATGTCCACTTACGCTAGGCAGCACAGACAGTAGGTGAGTT
CCGTAATACGTTTCGAGGATCGCACTAGTCAACTTGTACAGACAGTGCAC
GTCGTACAGATGACGTGAACAATATCCGTTACAATAGTATATCCAAAACG
CGTCTAGGTGGATCATTTTTGTATTCTGGTGAAGGGTTCTCTGAAGTCCA
GTAGTCTCTCTGTGTATCTCCTGTTTGTACTGGGCTTTTGTGGTGATTGG
CAGCAAATCGGGTGGCAAATGCCACCCGCAGAGAGGCGGATGCTGCGACT
ACTACAGGAGTACAGACGCTCCAATGGAGCACGATTCACACAGAGAGCTC
GATAGCTATGACACGCAACACAGCGCTGCGTTTGTTTTTGGTTCAAGCCT
CGAATCGCGGCACTACTGACGATACTGCTGTAGTATTCATGATTATAAGC
TTGATGCTCGTGTCTTTCCAGGGGCACTCACTGACTATGATACGTCATCT
TACCAGACATGCACATGCTCCTGGTTTGTATGTGAGCTAGCACAGAGGGT
GCACGAATGCATGGCAGTCCAGGCACGAATCCATACCCGCTCCGAGGCAC
CAATCCAGCCGCTAGGAACAGTGATAATCCACGGTACAGCTTCATTGCCG
AATAGGTTGGGTACTGTCTATCGATCCTCTCTTGATTTCAACAACAAGGC
AAACATGTAAAATTGAGAGATGATTTATTCTCGGTACGCTTAAGGGTCGA
GTGTTCCATCAGTTCATATTGGCGTGTTTTTGAAACGGTAAATCCCTCGG
CACATCTTGACCAGGACAGCAGACACAACGTCATTATAGGAATACACAAA
GGGGAGTTTACGGCGAAGAGCCCAGTCTCTTGTTCAAAACTTGTGGAACT
TCATATGAGTCCTTCGCATACACACGACACTCTGAGTTTATTCACGAGGT
CACGCGCAAGCGTAACAGCCATAGGTAACAATATCAGGCCATCAGCCTTC
CTTGATAGCAGACCTGGCGTTGATACACAAGATACATCGCAATCCTGGCT
CCAATTTGCAACCCCTCCAACTAGAGTAGCGTCAACGAAAGGCCAACGAC
AACTGACTAAAAAACACTACGCAGTTGTTGCAGATGTCGGGAAGCAGAAT
CCACTCTATACCAGCGGCCCAGCCGCGGGCCCACCCGTCAGCCATGGCGC
AAGATGCCGATGCGAGCGGCGCAATCGGACAGGGGAACGACGACGAATTC
GGCTTGCAGGAGATCCACGCCCCGTTCCCAGGGTTGCGCGAGGCCTGCGA
TGGCTGCGGGACCCTAAACGTGAGCGGACTAGGTTCGGGAATTTGGAGCT
GCGAATCGTGTAGTCGGATCGATGAGAGCCAATATGGTGAGACTGGCATG
AAGGTGGGGGGCGGTGGGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14553:4336..5756-

>mRNA_H-paniculata_contig14553.2725.1 ID=mRNA_H-paniculata_contig14553.2725.1|Name=mRNA_H-paniculata_contig14553.2725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig14553:4336..5756- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGGAAGCAGAATCCACTCTATACCAGCGGCCCAGCCGCGGGCCCA
CCCGTCAGCCATGGCGCAAGATGCCGATGCGAGCGGCGCAATCGGACAGG
GGAACGACGACGAATTCGGCTTGCAGGAGATCCACGCCCCGTTCCCAGGG
TTGCGCGAGGCCTGCGATGGCTGCGGGACCCTAAACGTGAGCGGACTAGG
TTCGGGAATTTGGAGCTGCGAATCGTGTAGTCGGATCGATGAGAGCCAAT
ATGGTGAGACTGGCATGAAGGTGGGGGGCGGTGGGGTGATGTCGGGAAGC
AGAATCCACTCTATACCAGCGGCCCAGCCGCGGGCCCACCCGTCAGCCAT
GGCGCAAGATGCCGATGCGAGCGGCGCAATCGGACAGGGGAACGACGACG
AATTCGGCTTGCAGGAGATCCACGCCCCGTTCCCAGGGTTGCGCGAGGCC
TGCGATGGCTGCGGGACCCTAAACGTGAGCGGACTAGGTTCGGGAATTTG
GAGCTGCGAATCGTGTAGTCGGATCGATGAGAGCCAATATGGTGAGACTG
GCATGAAGGTGGGGGGCGGTGGGGTG
back to top