mRNA_H-paniculata_contig14541.2720.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: A0A6H5L1W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W8_9PHAE) HSP 1 Score: 325 bits (832), Expect = 1.650e-93 Identity = 263/618 (42.56%), Postives = 333/618 (53.88%), Query Frame = 1 Query: 1 LYQLRHPPTVVRSAWVENSVRARRQLPTAEYMVEGVFVQKTTLAVAFATAAASSSAAPAASARFPKNLK---------SGKERTQCGSTSAKADKHSVHSQSSHAISQSGQ---KXXXXXXXXXXXXXXXGXIQSSSISSQSGGTYGKRGGVGVLPDYSGSLHLNKPFGQDDRRPSCGLTLSPVQITGKKTSGFAVGSASFGTSRVMGWSEADEADVTGTSVAAGELSKRAERKEGVLSSTSERKYGPSMSGL---KNGVTATFRGSSRSGCGTALTEGAVDSADCGQSSPRILAQQSEVPGSRRPSVLPAPPVYDPVSINGDGKRGERFVSSSIA--------------GPGTXXXXXXXXXXXXXXXXXXXXXXXXSTDTGKSSRDIYGTGPRNSGGNXXXXXXGDGKPKSGEVVLPPFEIPSMGAAGEG-RSTKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGPLGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDPMTAATEV 1764 L +LRHPP VVRSAWV++S +ARR+LP A+YMV+G+F QK TLA +FA +A PKN +G R G ++ + A ++G + XXXXXXXX S + S S S S HL+ G + + C ++ + S A +A G GT AG A R G+ S + L ++ A F S+ A +G+ + P++ AP P S G G G + S+ A G+ XXXXXX STD+G +R + G+G ++GG XXXX G S V PPFE+P MGAAGEG RSTK+DPAFM+TFF+ SRLH+IGVGRA AVK+VNAGLAARA PG +PV+ G LGRGE+RVILHVDMDCFFVS LVKN+PEL+DKPVAVAH+ASNAKGAGSSE+SSCNY ARA G++AGMFMMQAK++CPEL+VL+YDF+ Y+ AS+ MY +FL +APVVMAVSCDEAFLEL +GTDPM AAT + Sbjct: 199 LRKLRHPPPVVRSAWVQDSAKARRKLPLADYMVDGIFAQKGTLAASFAASAT------------PKNXXXXXXXXXGPAGVRRRVSGGSADSGYGKAPSGGVGPADRRTGGVDVRGGTRGGDXXXXXXXXXRGDDSGVHSGSRRXXXXXXXXXXXXXXSKSGHLS---GGRNTKHGCQDQGHAARVFPRHLSTDAASTARDG----------------GTGRGAGAGCPAASRSGGLTGSGAHENATLGRENLETRRSPALAAFEDSA------AAVDGSXXXXXXXXXXXXXXXXXXXXHAAEHPALSAAPRSAIP-STGGAGAGGGKDFSAPSATNADSNGHPVLEEGSAGSREQSNDNDRNCDXXXXXXGDDAPGSTDSG--TRYLVGSGATDAGGGSXXXXSVSGHDPS---VPPPFELPEMGAAGEGGRSTKDDPAFMKTFFRNSRLHFIGVGRAHAVKVVNAGLAARALPGATQPVFGGRLGRGETRVILHVDMDCFFVSVLVKNRPELKDKPVAVAHNASNAKGAGSSEISSCNYPARAKGLRAGMFMMQAKKMCPELIVLRYDFEAYTAASENMYGVFLRYAPVVMAVSCDEAFLELGEGTDPMEAATRI 773
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: D7FSG0_ECTSI (Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG0_ECTSI) HSP 1 Score: 298 bits (764), Expect = 1.340e-84 Identity = 149/193 (77.20%), Postives = 174/193 (90.16%), Query Frame = 1 Query: 1189 MGAAGEG-RSTKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGPLGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDPMTAATEV 1764 MGAAGEG RSTK+DPAFM+TFF+ SRLH+IGVGRA AVK+VNAGLAARA PG + V+ G LGRGE+RVILHVDMDCFFVS LVKN+PEL+DKPVAVAH+ASNAKGAGSSE+SSCNY ARA G++AGMFMMQAK+LCPEL+VL+YDF+ Y+ AS++MY +FL +APVVMAVSCDEAFLEL +GTDPM AAT + Sbjct: 308 MGAAGEGGRSTKDDPAFMKTFFRNSRLHFIGVGRAHAVKVVNAGLAARALPGATQAVFGGRLGRGETRVILHVDMDCFFVSVLVKNRPELKDKPVAVAHNASNAKGAGSSEISSCNYPARAKGLRAGMFMMQAKKLCPELIVLRYDFEAYTGASERMYGVFLRYAPVVMAVSCDEAFLELGEGTDPMEAATRI 500
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: K8YXF9_NANGC (DNA repair protein REV1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YXF9_NANGC) HSP 1 Score: 173 bits (439), Expect = 1.460e-42 Identity = 98/186 (52.69%), Postives = 125/186 (67.20%), Query Frame = 1 Query: 1213 STKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGP--LGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDPMTAATEV 1764 STK DP F++ +F++SRLH+IG RAR + AR V+ G + + R+I+HVDMDC+FVSALV+++PEL KPVAVAH + + SSE+SSCNY ARA+GV+AGMF+ +A+ LCP L VL YDF+VY S MY+IF A VV VSCDEA+LELA GTDP AA V Sbjct: 318 STKEDPDFIKKYFKSSRLHFIGSFRARMQDLAAEHARARRAARAVQSSEAGESNMRHCQRRLIMHVDMDCYFVSALVRDRPELAGKPVAVAHGEGQERHS-SSEISSCNYPARATGVRAGMFVGEAQRLCPGLKVLHYDFEVYERVSRAMYQIFFEEAEVVQPVSCDEAYLELAAGTDPEAAARRV 502
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: G5A174_PHYSP (DNA repair protein REV1 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A174_PHYSP) HSP 1 Score: 170 bits (431), Expect = 3.760e-41 Identity = 102/201 (50.75%), Postives = 124/201 (61.69%), Query Frame = 1 Query: 1162 VLPPFEIPSMGAAGEGRSTKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGPLGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDPMTAATEV 1764 LPP + + ST++ P F+R FF SRLH+IG RA + A A+ + G PV P + RVILHVDMDCFFV+ V+ +PEL+ PVAVAHS + AGSSE+SSC+Y+ARA GV AGMFM AKELCPELVVL Y FD S ++Y IF P V AVSCDEAFLE KGT+ M A + Sbjct: 227 ALPPVQNATSTTKLRTNSTRDGPEFVRHFFAKSRLHHIGTWRATFQQKA-AEFQAKYKGG---PVTRAPASSSD-RVILHVDMDCFFVAVAVRGRPELQKVPVAVAHSGN----AGSSEISSCSYLARAKGVGAGMFMQTAKELCPELVVLPYQFDAIQRVSFQIYDIFFSHTPYVQAVSCDEAFLEFGKGTNGMEKAKTI 418
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: A0A6A3K076_9STRA (DNA repair protein REV1 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3K076_9STRA) HSP 1 Score: 169 bits (428), Expect = 9.140e-41 Identity = 103/194 (53.09%), Postives = 123/194 (63.40%), Query Frame = 1 Query: 1171 PFEIPSMGAAGEGR--STKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGPLGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDPM 1746 P + GA + R ST++ P F+R FF SRLH+IG RA + A A+ + G PV P G+ RVILHVDMDCFFV+ V+ +PEL PVAVAHS + AGSSE+SSCNY+ARA G+ AGMFM AKELCPELVVL Y FD S ++Y IF P V AVSCDEAFLE KGT+ M Sbjct: 224 PPPVQPAGATSKLRTNSTRDGPEFVRHFFAKSRLHHIGTWRATFQQKA-AEFQAKYKGG---PVTRVPASSGD-RVILHVDMDCFFVAVAVRGRPELLKVPVAVAHSGN----AGSSEISSCNYLARAKGIGAGMFMQTAKELCPELVVLPYQFDAIQRVSFQIYDIFFSHTPYVQAVSCDEAFLEFGKGTNGM 408
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: A0A8J5J3U0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J3U0_9STRA) HSP 1 Score: 166 bits (420), Expect = 9.680e-41 Identity = 96/184 (52.17%), Postives = 117/184 (63.59%), Query Frame = 1 Query: 1213 STKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGPLGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDPMTAATEV 1764 ST++ P F+R FF SRLH+IG RA + A A+ + G P+ P + RVILHVDMDCFFV+ + KPEL PVAVAHS + AGSSE+SSCNY+ARA GV AGMFM AKELCPEL+VL Y FD S ++Y +F P V AVSCDEAFLE +GT+ M A + Sbjct: 227 STRDGPEFVRHFFAKSRLHHIGTWRATFQQKA-AEFQAKYKGG---PINRAPASSSD-RVILHVDMDCFFVAVAARGKPELHKVPVAVAHSGN----AGSSEISSCNYLARAKGVGAGMFMQTAKELCPELIVLPYQFDAIERVSFQIYDMFFSHTPYVQAVSCDEAFLEFGRGTNGMEKANTI 401
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: A0A8J4AX76_9CHLO (UmuC domain-containing protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AX76_9CHLO) HSP 1 Score: 159 bits (403), Expect = 1.640e-40 Identity = 85/178 (47.75%), Postives = 116/178 (65.17%), Query Frame = 1 Query: 1210 RSTKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGPLGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDP 1743 RST+NDP FM TFF+ASRLH+IG + R ++ A P P +G RV++HVDMDCFF SA +PEL KPVAV HS ++A+G G EVSS NY+AR+ GV+A MF+ +AK CP+L+V+ Y+F+ Y S+++YRI + + +V VSCDEAFL++ DP Sbjct: 36 RSTRNDPRFMETFFKASRLHFIGTWKTRIEALMAEVEGAAPNP--------APYTKGTERVVIHVDMDCFFASAAAVGRPELAGKPVAVCHS-NSARGTG--EVSSANYLARSFGVRADMFIAEAKRRCPDLIVVPYEFERYQTISEQVYRILMSYTSIVQPVSCDEAFLDVTGLGDP 202
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: W7TVM9_9STRA (DNA repair protein REV1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVM9_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.570e-40 Identity = 95/182 (52.20%), Postives = 122/182 (67.03%), Query Frame = 1 Query: 1225 DPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGP--LGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDPMTAATEV 1764 DP F++ +F++SRLH+IG RAR + AR V+ G + + R+I+HVDMDC+FVSALV+++PEL KPVAVAH + + SSE+SSCNY ARA+GV+AGMF+ +A+ LCP L VL YDF+VY S MY+IF A VV VSCDEA+LELA GTDP AA V Sbjct: 207 DPDFIKKYFKSSRLHFIGSFRARMQDLAAEHARARRAARAVQSSEAGESNMRHCQRRLIMHVDMDCYFVSALVRDRPELAGKPVAVAHGEGQERHS-SSEISSCNYPARATGVRAGMFVGEAQRLCPGLKVLHYDFEVYERVSRAMYQIFFEEAEVVQPVSCDEAYLELAAGTDPEAAARRV 387
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: D0NDK9_PHYIT (DNA repair protein REV1 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NDK9_PHYIT) HSP 1 Score: 167 bits (424), Expect = 2.830e-40 Identity = 100/184 (54.35%), Postives = 117/184 (63.59%), Query Frame = 1 Query: 1213 STKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGPLGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGTDPMTAATEV 1764 STK+ P F+R FF SRLH+IG RA + A A+ + G V RVILHVDMDCFFV+ V++KPEL+D PVAVAHS++ AGSSE+SSCNY ARA GV AGMFM AKELCPEL+VL Y FD S ++Y IF P V AVSCDEAFLE KGT M A + Sbjct: 202 STKDGPDFVRHFFAKSRLHHIGTWRATFQQKA-AEFQAQYKGGPVTRAS----ATSSDRVILHVDMDCFFVAVAVRDKPELQDVPVAVAHSSN----AGSSEISSCNYSARAKGVGAGMFMQTAKELCPELIVLPYQFDDIQRVSFQIYDIFFSHTPYVQAVSCDEAFLEFEKGTKGMEKANAI 376
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Match: H3GTZ8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTZ8_PHYRM) HSP 1 Score: 163 bits (412), Expect = 7.980e-40 Identity = 97/175 (55.43%), Postives = 114/175 (65.14%), Query Frame = 1 Query: 1213 STKNDPAFMRTFFQASRLHYIGVGRARAVKIVNAGLAARARPGGVKPVYDGPLGRGESRVILHVDMDCFFVSALVKNKPELRDKPVAVAHSASNAKGAGSSEVSSCNYIARASGVKAGMFMMQAKELCPELVVLKYDFDVYSEASDKMYRIFLHFAPVVMAVSCDEAFLELAKGT 1737 ST++ F+R FF SRLH+IG RA + A A+ + G V P+ E RVILHVDMDCFFV+ V+ +PEL+ PVAVAHS + AGSSE+SSCNY+ARA GV AGMFM AKELCPELVVL Y FD S ++Y IF P V AVSCDEAFLE KGT Sbjct: 226 STRDGAEFVRHFFAKSRLHHIGAWRATFQQKA-AEFQAKYKGGAV---VRAPVSSSE-RVILHVDMDCFFVAVAVRGRPELQKVPVAVAHSGN----AGSSEISSCNYLARAKGVGAGMFMQTAKELCPELVVLPYQFDAIQRVSFQIYDIFFSQTPYVQAVSCDEAFLEFGKGT 391 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14541.2720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14541.2720.1 >prot_H-paniculata_contig14541.2720.1 ID=prot_H-paniculata_contig14541.2720.1|Name=mRNA_H-paniculata_contig14541.2720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=588bp LYQLRHPPTVVRSAWVENSVRARRQLPTAEYMVEGVFVQKTTLAVAFATAback to top mRNA from alignment at H-paniculata_contig14541:150..6241+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14541.2720.1 ID=mRNA_H-paniculata_contig14541.2720.1|Name=mRNA_H-paniculata_contig14541.2720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6092bp|location=Sequence derived from alignment at H-paniculata_contig14541:150..6241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14541:150..6241+ >mRNA_H-paniculata_contig14541.2720.1 ID=mRNA_H-paniculata_contig14541.2720.1|Name=mRNA_H-paniculata_contig14541.2720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3528bp|location=Sequence derived from alignment at H-paniculata_contig14541:150..6241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |