mRNA_H-paniculata_contig14535.2718.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14535.2718.1
Unique NamemRNA_H-paniculata_contig14535.2718.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: D7G257_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G257_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 3.510e-89
Identity = 138/186 (74.19%), Postives = 156/186 (83.87%), Query Frame = 1 
Query:    1 QLKISSSTKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVV-NPDETCDGTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLD-LFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLTISGNECYNNG 552
            +LK SS+ K W RIMGHGGNIDI  T VRSWD +K+++HILKD    D G + RS++ CVSEVV + DETCDGTAQ DMGECRMDIV S V+Y GYD TESYGITWKVRGLC+DLSN D LFDSVRVYGD+++SDI+ +WYG YSYGHLGGVWT+NLMHDN  YGFDPHDDSDYLTISGN CYNNG
Sbjct:  440 ELKFSSTKKAWNRIMGHGGNIDIDSTVVRSWDASKTLDHILKDS---DDGTTNRSFIACVSEVVVDADETCDGTAQNDMGECRMDIVDSTVAYFGYDETESYGITWKVRGLCDDLSNKDTLFDSVRVYGDMKNSDIYGMWYGHYSYGHLGGVWTDNLMHDNHVYGFDPHDDSDYLTISGNTCYNNG 622
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: D7G261_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G261_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 5.310e-77
Identity = 118/185 (63.78%), Postives = 143/185 (77.30%), Query Frame = 1 
Query:    1 QLKISSSTKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPDETCDGTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLD-LFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLTISGNECYNNG 552
            ++ +SSS   ++RI G GG++  Y TEV SW       H L D    + G  PRSY+ C+SE++   +TCDG A+K+ GECRMD+++S +SYLGY+ATESYG++WKVRGLC DLSN D LFDSVRVYGDLQDSDI+ LWYG YSYGHLGG+WTNN MHDN  YGFDPHDDSDYLTI+GN CYNNG
Sbjct:  333 KILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHTLPD--DAEWGAEPRSYIGCLSEILEEGQTCDGVAKKERGECRMDVIESIISYLGYEATESYGLSWKVRGLCTDLSNQDTLFDSVRVYGDLQDSDIYGLWYGHYSYGHLGGMWTNNFMHDNHVYGFDPHDDSDYLTITGNTCYNNG 515
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: D7FWW1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW1_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 2.880e-75
Identity = 112/184 (60.87%), Postives = 142/184 (77.17%), Query Frame = 1 
Query:    1 QLKISSSTKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPDETCD-GTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLDLFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLTISGNECYNN 549
            +LKI SST   + + GHGGN+DIY T ++SWD      HIL D ++   G  PRSY+ C SEVVN ++TCD G A++D GECRMD+V S++ ++GY A+ESYGITWKVRG CED+SN ++FD+V VYGD+ + DIHH+WYG YSYGH GGVWT++LMHDN+ YGFDPHDDSDYLTI  N  +NN
Sbjct:  155 ELKIRSSTTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDST---GDEPRSYIACTSEVVNENDTCDSGYAREDKGECRMDMVDSELGHMGYFASESYGITWKVRGFCEDMSNPEVFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMHDNYVYGFDPHDDSDYLTIRNNTVWNN 335
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: A0A6H5JNF4_9PHAE (MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF4_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.840e-72
Identity = 111/187 (59.36%), Postives = 141/187 (75.40%), Query Frame = 1 
Query:    1 QLKISSSTKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPDETCD-GTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLDLFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMH---DNWQYGFDPHDDSDYLTISGNECYNN 549
            +LKI SS    + + GHGGN+DIY T ++SWD      HIL D ++   G  PRSY+ C SEVVN ++TCD G A++D GECRMD+V S++ ++GY A+ESYGITWKVRG CED+SN ++FD+V VYGD+ + DIHH+WYG YSYGH GGVWT++LMH   DN+ YGFDPHDDSDYLTI  N  +NN
Sbjct:  220 ELKIRSSPTLIHAVRGHGGNLDIYKTLIQSWDENLLTAHILADDST---GDEPRSYIACSSEVVNENDTCDSGYAREDKGECRMDMVDSELGHMGYFASESYGITWKVRGFCEDMSNPEVFDNVNVYGDITNCDIHHMWYGMYSYGHQGGVWTDSLMHGEDDNYVYGFDPHDDSDYLTIRNNTVWNN 403
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: A0A6H5J745_9PHAE (MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J745_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 6.550e-72
Identity = 113/183 (61.75%), Postives = 143/183 (78.14%), Query Frame = 1 
Query:    1 QLKISSSTKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPDETCDGTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLD-LFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLTISGNECYN 546
            ++ +SSS   ++RI G GG++  Y TEV SW       H+L D    + G  PRSY+ C+SE++   +TCDG A+K+ GECRMD+++S +SYLGY+ATESYG++WKVRGLC+DLSN D LF+SVRVYGD+++SDI+ LWYG YSYGHLGGVWTNN MHDN  YGFDPHDDSDYLTI+GN CYN
Sbjct:  529 KILLSSSPTNYFRIRGAGGHLYFYQTEVTSWVEEDLAPHMLPD--DAEWGAEPRSYIGCLSEILEEGQTCDGVAKKERGECRMDVIESIISYLGYEATESYGLSWKVRGLCDDLSNKDTLFESVRVYGDIKNSDIYGLWYGHYSYGHLGGVWTNNFMHDNHVYGFDPHDDSDYLTITGNTCYN 709
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 5.550e-68
Identity = 108/184 (58.70%), Postives = 134/184 (72.83%), Query Frame = 1 
Query:    1 QLKI-SSSTKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPDETCDGTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLDLFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLTISGNECYNN 549
            +L+I S+S   ++ I GHGGN+   DT V SWDV              +  K  RS++ CVSEV+  ++TC   A  +MGECRMDI+ S++ YLGYDA+E+YGITWKVRG C DLSN D+FD V VYGD++ SDIHH++YG YS+GH GGVWTNNLMHDN QYGFDPHDDSDYL I+GN+ YNN
Sbjct:   80 ELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQ--------ETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNN 252
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 2.160e-62
Identity = 103/184 (55.98%), Postives = 133/184 (72.28%), Query Frame = 1 
Query:    1 QLKISSS-TKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPDETCDGTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLDLFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLTISGNECYNN 549
            QL+I S+ +  ++ + GHGG++   DT V SWD               +  ++ RS++ CVSE +  D+ C+G A+ +MGECRMDI+ S+++YLGY  +ESYG+TWKVRG C+DLSN ++F+   VYGDL  SDIHHL+YG YSYGH GGVWTNN MHDNWQYGFDPHDDSDYLTI+ NE YNN
Sbjct:  518 QLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQ--------ETYENGRSFLNCVSEKLTGDD-CEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNN 692
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.710e-60
Identity = 95/177 (53.67%), Postives = 124/177 (70.06%), Query Frame = 1 
Query:    1 QLKISSS-TKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPDETCDGTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLDLFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLTIS 528
            +L+I S+    WY + GHGG++    T V SWD               +  +  RS++ CVSE +   ETCDG A+ D GECRMDI+ S++ Y+G+   ESYG+TWKVRG C+DLSN D+F++  VYGD+++S+IHH++YG YSYGH GGVWTNN MHDN QYGFDPHDDSDYLTI+
Sbjct:   46 ELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQ--------ETYEGGRSFLNCVSEKLTG-ETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIA 213
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.930e-60
Identity = 101/193 (52.33%), Postives = 129/193 (66.84%), Query Frame = 1 
Query:    1 QLKISSS-TKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPDETCDGTAQKDMGECRMDIVKSQVSYLGYDATESYGITWK--------VRGLCEDLSNLDLFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLT--ISGNECYN 546
            QL+I S+ +  ++ + GHGG++   DT V SWD               +  +  RS++ CVSE +  D+ C+G A+ +MGECRMDI+ S+++YLGY  +ESYG+TWK        VRG C+DLSN ++FD   VYGDL  SDIHHL+YG YSYGH GGVWTNN MHDNWQYGFDPHDDSDYLT  I+   C N
Sbjct:   67 QLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQ--------ETYEGGRSFLNCVSEKLTGDD-CEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNN 250
[Close]
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 202 bits (515), Expect = 5.680e-59
Identity = 97/185 (52.43%), Postives = 130/185 (70.27%), Query Frame = 1 
Query:    1 QLKISSSTKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVGKSPRSYVLCVSEVVNPD-ETCDGTAQKDMGECRMDIVKSQVSYLGYDATESYGITWKVRGLCEDLSNLDLFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGVWTNNLMHDNWQYGFDPHDDSDYLTISGNECYNNG 552
            +L++ S++K +  +  HGG++D   T+V +WD +K+           D  K  RSY+  VSEV+    + CDG A+K+MGE RMDI  S+++YLGY  +ESYG+TWKVRGLC DLSNL++FD+V VYG++ DSDIHH ++G Y+YGH  G W  N MH N +YGFDPHDDSD+LTI  NE YNNG
Sbjct:  127 ELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNK-------VRTDDSKG-RSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNG 303
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14535.2718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G257_ECTSI3.510e-8974.19Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G261_ECTSI5.310e-7763.78Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FWW1_ECTSI2.880e-7560.87Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF4_9PHAE1.840e-7259.36MEP16 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5J745_9PHAE6.550e-7261.75MEP21 protein (Fragment) n=1 Tax=Ectocarpus sp. CC... [more]
D7FRR8_ECTSI5.550e-6858.70Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LC73_ECTSI2.160e-6255.98Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FIU4_ECTSI1.710e-6053.67Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE4.930e-6052.33MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A8CEP1_SACJA5.680e-5952.43Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14535contigH-paniculata_contig14535:1036..5962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue7.1e-55
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons7
Model size696
Cds size696
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929157.4093246-CDS-H-paniculata_contig14535:1035..11161622929157.4093246-CDS-H-paniculata_contig14535:1035..1116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 1036..1116 +
1691480753.0094986-CDS-H-paniculata_contig14535:1035..11161691480753.0094986-CDS-H-paniculata_contig14535:1035..1116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 1036..1116 +
1622929157.4262695-CDS-H-paniculata_contig14535:1917..20221622929157.4262695-CDS-H-paniculata_contig14535:1917..2022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 1918..2022 +
1691480753.0217118-CDS-H-paniculata_contig14535:1917..20221691480753.0217118-CDS-H-paniculata_contig14535:1917..2022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 1918..2022 +
1622929157.4369388-CDS-H-paniculata_contig14535:2312..24441622929157.4369388-CDS-H-paniculata_contig14535:2312..2444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 2313..2444 +
1691480753.0311024-CDS-H-paniculata_contig14535:2312..24441691480753.0311024-CDS-H-paniculata_contig14535:2312..2444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 2313..2444 +
1622929157.450549-CDS-H-paniculata_contig14535:2649..27591622929157.450549-CDS-H-paniculata_contig14535:2649..2759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 2650..2759 +
1691480753.0405443-CDS-H-paniculata_contig14535:2649..27591691480753.0405443-CDS-H-paniculata_contig14535:2649..2759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 2650..2759 +
1622929157.4657364-CDS-H-paniculata_contig14535:4293..43371622929157.4657364-CDS-H-paniculata_contig14535:4293..4337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 4294..4337 +
1691480753.0503435-CDS-H-paniculata_contig14535:4293..43371691480753.0503435-CDS-H-paniculata_contig14535:4293..4337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 4294..4337 +
1622929157.4763167-CDS-H-paniculata_contig14535:5452..55301622929157.4763167-CDS-H-paniculata_contig14535:5452..5530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 5453..5530 +
1691480753.0610647-CDS-H-paniculata_contig14535:5452..55301691480753.0610647-CDS-H-paniculata_contig14535:5452..5530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 5453..5530 +
1622929157.5023296-CDS-H-paniculata_contig14535:5816..59621622929157.5023296-CDS-H-paniculata_contig14535:5816..5962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 5817..5962 +
1691480753.068928-CDS-H-paniculata_contig14535:5816..59621691480753.068928-CDS-H-paniculata_contig14535:5816..5962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14535 5817..5962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14535.2718.1prot_H-paniculata_contig14535.2718.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14535 1036..5962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14535.2718.1

>prot_H-paniculata_contig14535.2718.1 ID=prot_H-paniculata_contig14535.2718.1|Name=mRNA_H-paniculata_contig14535.2718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp
QLKISSSTKKWYRIMGHGGNIDIYDTEVRSWDVTKSMEHILKDCTSCDVG
KSPRSYVLCVSEVVNPDETCDGTAQKDMGECRMDIVKSQVSYLGYDATES
YGITWKVRGLCEDLSNLDLFDSVRVYGDLQDSDIHHLWYGQYSYGHLGGV
WTNNLMHDNWQYGFDPHDDSDYLTISGNECYNNGNHGIIASKRCDHLLVT
DNNSYNNGGSGIMLHKSCDDSIVAGVDETRN*
back to top

mRNA from alignment at H-paniculata_contig14535:1036..5962+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14535.2718.1 ID=mRNA_H-paniculata_contig14535.2718.1|Name=mRNA_H-paniculata_contig14535.2718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4927bp|location=Sequence derived from alignment at H-paniculata_contig14535:1036..5962+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTCAAGATTAGCAGCTCAACGAAGAAGTGGTACAGGATCATGGGACA
CGGCGGCAACATCGATATCTATGATACAGAGGTGAGGAACAAGCTCCCCC
CTTCCTTCCCCCCCCCCCCCCTCGTCCATCCCCTCTCACAGTATTTTCGA
CACGTCAAAGTTGTATACTAAGTTGGTCGCCCTAAACTGTACTGATAACT
GTCTGTTTTATTTGCGTTGATGAATGCTGTTCCACCACAGTATGCTGTTT
TGGTCGATGGGGTGCCACAGTGACAGGGCTTGGCCGAGTTATTGTGGCCG
GCTACAGGGTCCCTGGACAACGTCAAGTGCCACACTCTGTGGTTGTGGAG
AGCTCTTTCCCTCTGCCCCCACGTACACCTCTACTTGATGACTATTGCAC
TACACTCATGTTGCACCTCGGTACTACTGTTGAACAACTCGAATGGCGTG
GCTGTTGTACGGGATGTGTGTGTGTGTGTGTGTGTTTTTTGCGTCATCAC
GTTCCGTGTCATATGCGTAATCTCGGTGTCCATTGCTAGCATTCAAGGTC
AGGATTGGATGTGCAGGGTGGTTGATGTATCCTGAAGAGATAGTTGTCAA
GACAGATCTGCGATGGATTGCGTCCAGTCGTCTGATGTAACCTGTTTTCC
ATAACATGAAGAAAATATGTCCCCAGAAAAGATCTCAGAGGGTTGCCTTC
CGAAAGTATTAACAGCCGGTGCAGGTTGTCGGTATGAAATTTGTTCCGAA
ATGAGGATGAACGTGCTTTCACACCTCTCTATTGGTACAGAGACCGGAAA
CTCGTGTTAATAGTGTCAACCAGTGAACGTGGATAGTGACGGTGTTTTTG
AAGCGATGTGTGGATAATGACTTGATTTTCAGGTGAGGAGCTGGGACGTG
ACAAAGAGCATGGAGCATATCCTCAAGGACTGCACGTCGTGCGACGTGGG
TAAAAGTCCGCGCTCTTACGTCCTATGTGTCAGCGAGGTGAGGTGATTAA
CCCTTCGATTTTGTATGAAACAACAATCACAAACATGTGCGGGTAGGTAG
GTGATGTCATTTGTGTAGGAACGAATTAGCCATTTATGTAAAAAATCGAA
TCTGCTTCAAAACCTCCCTGCTTGCTCTCAAAAGACAAGAGGTTGTGTGC
ATAACGTACAGCAATGTATACATATTATGTAGCCGCCGCTTTCACTGTCA
CGCTGCGGAGAGTATTTGATTGGTAAGTTGGAAAGGTGTGTTTTCCCTTC
GTACGCGTGCTCGTCCGGCGTGCGTAGGTGGTCAATCCTGACGAGACCTG
TGATGGCACGGCCCAGAAGGACATGGGGGAGTGCCGCATGGATATCGTGA
AGAGCCAGGTGTCGTACCTTGGTTACGACGCCACGGAATCTTACGGCATC
ACGTGGAAGGTACTGTACAGCGTGTGTACTCACTGAATTGTATTCTATTC
TAGACACCGGATTAACCCAGCGGGTTAAAAAGTTCGAGGCTTCCAAACGT
TAGCACGCTCGCTGTGTACATTTATACTAAAATACGGTAGGTGAACTTTT
TTTTTTTTTTTTCCCAATACCTTTTCCCTTTTTGCCATTAACACGTTTTT
TTTTTTTTTTCAAGGTCCGTGGTTTGTGTGAAGATCTTAGCAACCTCGAC
CTGTTCGACAGCGTTCGTGTGTACGGGGACCTTCAGGACTCGGATATTCA
CCACCTGTGGTATGGCCAGTACAGGTGGGTCTACTTTTTTTGTTTTTTCG
ACCTTTTAAAAAAAAATATATATATATATATATATATATCATCGTCAGCT
CGGACAAGCTGGAATCTATTTATTGATGCGGGTAAATTGATCCTACGAAC
AAGGATAGTAGAAATGTGGACGGCGATACTTGGGAACACTTGGGGGAAAA
AAAAAAAAATGTTCTTATGAGATGTTCCACCACCCAAGGATAAAAGCACG
AGTACGTGGGGCAAGTGTTTGCGAGTGTCATTCGAAGTTTCGAAAGTGTT
TACTTTAGTTTTAGACTGCTCGGGGACATGGAGTGAAATTTCGACCCCTC
TTTTTTATTTTGTTCATGTTGGCGTTATTACTATTTAGAGCAGTCGTGAA
CGCTCCGCGGCACATATCGACTGAAGTGGGTCACCCTCCTGAACCTCGAG
GCTTGAGTTGTTTTTTTTTCTTTTTTAACGTTCGTTGCTAATGCGTGAGT
TGTTCGTATTTTTTGCGGGGGGGGTGCAAATGTTACGTTGTAGGAGCTTG
TCGTGTATTCTCGAGCATGTTTTGACACCTTCGCTGTTGTGACGGCGGTG
TAACGTCGTATTTTGTGTTTCGATATGTTTTGAACAGTAACACTGGAGAG
CAAGAAAACGCGACAGAAGTTAAGCGTCGGGCTCGTGCCGTGCAGCGCTT
GCAAGCCAAGTAATTTTGTCATGTTTTTTTCCGGCTTTGAAAGTCGTTTT
AGTAGTTGTGACTCAACCCTTGTGGTTTGTTAGCGACACTCGTTGTTCGT
TCTTTGTGGAGTTCAAAGGTTACGCTTGTCGACTATTGATTGGCCAACGT
TGGAGTGTGATATGGTGAGTATTTTCAGTATGTTGATGAATGGTTTAAGT
AGTGCGGTCAGTACAGAGCGCTGAGGCATACTGCGTTCAATCGTTAGTAC
AGTGTGTGAGGACAGCATGACACAGTCAGTCACAATTTCGTGCTGTGATT
AATGCTATTTTGTTCATTTTCATGGAGTGCTTTCATTTTCGGGAAAAAAT
AAATAAATAAATATATATATATATATATATATAAATATTTGAGGTACCTA
GGTTGTATGTATATGCAGATCTAATGTGGGCAAATACACACACACACACA
CTCACACCAAGGTATGTTGAAATATATTTCTTATCACGTCTTGGTTGCCG
CCTATTCTTTTGGCTTTTCCTTCCATTCGGTGTCTAGATGATGAATCCTG
CAAGCGTCACCCACACTACAGGTTCATGCACTCGAGGTGCGTGGATCTAA
CGTGGCTTGGGAAGGACCGCCGGTCTTGTTAGTGTAAGGACTTGTCTAGG
ATCACCTTTGAGCACCTCTTTTGCGCATTGAAAATTTAAAATTACACCGC
GTGTTGAAGAGCCGTATCTGTCCCAAATATATTTGTATGTTTTGGAAAAT
AAAGAGTGGAAGCTTCTTCTCTAGCTGTTCTGATGTGCTCTTATCGGCAA
CGTTTCCTTTTGTTTGTTGACATGATATGTTGGATGACGACTGTTACGTA
CTTTGCAGTTATGGACACCTCGGCGGCGTATGGACGAACAACCTCATGCA
TGGTGAGTTACCCCCCCCCCCAAAAGTTGCATCGATCTCTGTATAAATCT
GTGTGTTTTGTGCGTTTTTGATGATAAGGAACCAGAAGACCGGGAAATGT
TCATGCCAGAATGTTCTCCCTGACTGCACTGTGTACACCAGCGCATCGGT
CTAGGAAGGGGTACCGAAGTTTTGCGAAACTGGAAACATACGTGATCAAG
TTTGAACCTTTGTAAATGAAATCGCGGCAGAGTCAATTGGCCGGGGGGAT
CTTTTGCCTTCGAAATCACAAATTTATTTCGTTGCGGCGGGTAGAAATTG
GTGATATGTGTCTCATGGAGTAAATCACTCTGTGCGAAACAGCTACAACC
CAGCCTTGTTTTCTAAACGCCGCTTTTGCGCTTGGAATTGTGTCCCGGGG
AGATTGGGTACGATGTAAATTAATGTCGGTGAAAGACGCCAGCGGCGCGA
TTACCGTTTTTGGGGTTGGGTTGGAAATTGAAAATTGGACAGCACAGTTT
AATGCACAGTTTTATTGGCATGATACAGATATATAATTTCTTTATCCTGC
CGTGATCCCTCACAGTGTTTGATCGCTGCTATTGTGATAGACTAGATTAT
TTTCTCTCTCTGTACTCTCTTGTTCCTCCCTCTATTCTGTCAGCATTTTT
TTCGAGTTATTCCTAGTTTTTTTATTCAATATTCGTAAAAATTCATATTT
TTCTTGGCCCTTGTAAAAATTCGTTTCTTGTCGAAGAACAGGCGAACGAA
ATTATCGATCAATCAAATCATACCGCGATTTTGTTTCTCCGTTCCTCGAT
CAGACACGTCCTCACGTATTTCTCACGTATTTCGTCACCCTGAATTTCTT
TTGCACATGGGCACGAATTTTTGTGCTATATGTGTATATATAAATATATA
TCCTCCCCCTCTCCTTCAGTTCCGCTGTTTTATATATTGTTCCAACTGGA
CTTTCACCCTTCGTTTCGTCTTGTTTGAATTTTGCTGGTTGGCGTGTATA
GGCTCAAGCGTAGGTCATGACCTCGGCAAAAAGGAAATTCAACCCTCACG
TTTCCCCTCCACCTGATCCTCCCGGTTTCGCCTTGTGTACGTTACTTGAT
TTTCTTTCTATGCAAAGACAATTGGCAGTACGGCTTCGATCCTCACGACG
ACAGTGACTACCTAACCATCTCGGGGAACGAGTGCTACAACAACGGTGAG
TCGTTGCGCTGCTGGCACCAATATGCTAGGACCGGACCGGCCGACCCTAT
CGGGTGTACGTACAATTATAGTTATTTCTCCAAGTTCAATATCGAGTGTC
GGTTTGTTGTCTGAAGAGCAGATCTCCATTCGGCGCTTCTGTGTAGCGTG
CAGCCCATCAAACACAGCAAAGCCCCTGATATAATGAAGCCAATCAAGCC
TAATTTGTTTTGTTGTGGTCCTCCTCCATTTGCGCCTAACTCCGGAACCA
AACCTTGCCTGCTGCATCCGTCATGATCCAGGAAACCACGGCATCATTGC
CTCCAAGCGGTGCGATCATCTACTAGTCACGGACAACAATTCCTACAACA
ACGGGGGCAGCGGCATCATGCTCCACAAGAGCTGCGATGACAGCATTGTG
GCAGGTGTGGATGAAACAAGAAATTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig14535:1036..5962+

>mRNA_H-paniculata_contig14535.2718.1 ID=mRNA_H-paniculata_contig14535.2718.1|Name=mRNA_H-paniculata_contig14535.2718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig14535:1036..5962+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTCAAGATTAGCAGCTCAACGAAGAAGTGGTACAGGATCATGGGACA
CGGCGGCAACATCGATATCTATGATACAGAGCAGCTCAAGATTAGCAGCT
CAACGAAGAAGTGGTACAGGATCATGGGACACGGCGGCAACATCGATATC
TATGATACAGAGGTGAGGAGCTGGGACGTGACAAAGAGCATGGAGCATAT
CCTCAAGGACTGCACGTCGTGCGACGTGGGTAAAAGTCCGCGCTCTTACG
TCCTATGTGTCAGCGAGGTGAGGAGCTGGGACGTGACAAAGAGCATGGAG
CATATCCTCAAGGACTGCACGTCGTGCGACGTGGGTAAAAGTCCGCGCTC
TTACGTCCTATGTGTCAGCGAGGTGGTCAATCCTGACGAGACCTGTGATG
GCACGGCCCAGAAGGACATGGGGGAGTGCCGCATGGATATCGTGAAGAGC
CAGGTGTCGTACCTTGGTTACGACGCCACGGAATCTTACGGCATCACGTG
GAAGGTGGTCAATCCTGACGAGACCTGTGATGGCACGGCCCAGAAGGACA
TGGGGGAGTGCCGCATGGATATCGTGAAGAGCCAGGTGTCGTACCTTGGT
TACGACGCCACGGAATCTTACGGCATCACGTGGAAGGTCCGTGGTTTGTG
TGAAGATCTTAGCAACCTCGACCTGTTCGACAGCGTTCGTGTGTACGGGG
ACCTTCAGGACTCGGATATTCACCACCTGTGGTATGGCCAGTACAGGTCC
GTGGTTTGTGTGAAGATCTTAGCAACCTCGACCTGTTCGACAGCGTTCGT
GTGTACGGGGACCTTCAGGACTCGGATATTCACCACCTGTGGTATGGCCA
GTACAGTTATGGACACCTCGGCGGCGTATGGACGAACAACCTCATGCATG
TTATGGACACCTCGGCGGCGTATGGACGAACAACCTCATGCATGACAATT
GGCAGTACGGCTTCGATCCTCACGACGACAGTGACTACCTAACCATCTCG
GGGAACGAGTGCTACAACAACGACAATTGGCAGTACGGCTTCGATCCTCA
CGACGACAGTGACTACCTAACCATCTCGGGGAACGAGTGCTACAACAACG
GAAACCACGGCATCATTGCCTCCAAGCGGTGCGATCATCTACTAGTCACG
GACAACAATTCCTACAACAACGGGGGCAGCGGCATCATGCTCCACAAGAG
CTGCGATGACAGCATTGTGGCAGGTGTGGATGAAACAAGAAATTAAGAAA
CCACGGCATCATTGCCTCCAAGCGGTGCGATCATCTACTAGTCACGGACA
ACAATTCCTACAACAACGGGGGCAGCGGCATCATGCTCCACAAGAGCTGC
GATGACAGCATTGTGGCAGGTGTGGATGAAACAAGAAATTAA
back to top