prot_H-paniculata_contig14533.2717.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig14533.2717.1
Unique Name	prot_H-paniculata_contig14533.2717.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	144

Homology

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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.490e-21
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD------LYSFSLDL-------TNGRYAPELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 144
            + L GV  G + G++ D +G  R +    ++ PGL  NLFSV  A    VA++F  DNPRLE+     P+Q L  D      +YS  + L       T    AP+        A LWHR +GH+N ++LD+L+K   NGV + G V  C VC + K
Sbjct:  387 HVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGK 542

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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5KDX9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.660e-21
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASDLYS----FSLDLTNGRY---------APELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 144
            + L GVA G + G++ D +G +R +    ++ PG   NLFSV  A    VA++F  DN RL++     P+Q L  D  +    +S+++  GR          AP+        A LWHR +GH+N +SLD+L+K   +GV + G V DC VC + K
Sbjct:  330 HVLKGVATGTIVGAVTDDNGNERHVLFRVILVPGPGTNLFSVTLAMLKGVATLFHPDNTRLDSGDVVFPMQTLGVDATTGKRIYSIEVKLGREPGGPTVLGDAPDALALKVESADLWHRHMGHINGKSLDVLRKEPVHGVDYTGDVKDCSVCPLGK 485

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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-21
Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD------LYSFSLDLTNGRYAPELAMQA-------AADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 144
            + L GV  G + G++ D +G  R +    ++ PGL  NLFSV  A    +A++F  DNPRLE+     P+Q L  D      +YS  + L      P +   A          A LWHR +G +N +SLD+L+K+  N V + G V DC VC + K
Sbjct:  640 HVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGK 795

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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.370e-20
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD-----LYSFSLDL---TNGRYAPE-----LAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 144
            + L GV  G+L G++ D  G  R +    ++ PGL  NLFSV  A  N VAS+F  DNPRLE+    +P++    D       S ++ L     GR  P      LA++    A LWHR +GH+N +SLD+L+++  +G+ + G V DC  C + K
Sbjct:  461 HVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGK 615

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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.280e-20
Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 0

Query:    4 LDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASDLYSFSLDLTNGRYAPELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 144
            L GVA G + G++ D +G  R +    ++ PGL   LFSV  A    VA++   DN RLE+     P+Q L        +D T G+    + +++A    LWHR +GH+N +SLD+L+K   NGV + G V DC VC + K
Sbjct:  553 LKGVATGTIFGAVTDDNGNDRHVSFCVVLVPGLGTKLFSVTLAMLKGVATLCHPDNHRLESGDVVFPMQTLG-------VDATTGKRIYSIEVESA---DLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGK 683

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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.290e-20
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD-----LYSFSLDL---TNGRYAPE-----LAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 144
            + L GV  G+L G++ D  G  R +    ++ PGL  NLFSV  A  N VAS+F  DNPRLE+    +P++    D       S ++ L     GR  P      LA++    A LWHR +GH+N +SLD+L+++  +G+ + G V DC  C + K
Sbjct:  461 HVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGK 615

[Close]

BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.300e-20
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD-----LYSFSLDL---TNGRYAPE-----LAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 144
            + L GV  G+L G++ D  G  R +    ++ PGL  NLFSV  A  N VAS+F  DNPRLE+    +P++    D       S ++ L     GR  P      LA++    A LWHR +GH+N +SLD+L+++  +G+ + G V DC  C + K
Sbjct:  366 HVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGK 520

[Close]

BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-19
Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD-----LYSFSLDL---TNGRYAPE-----LAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVC 140
            + L GV  G+L G++ D  G  R +    ++ PGL  NLFSV  A  N VAS+F  DNPRLE+    +P++    D       S ++ L     GR  P      LA++    A LWHR +GH+N +SLD+L+++  +G+ + G V DC  C
Sbjct:  461 HVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSAC 611

[Close]

BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5KB94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB94_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.990e-19
Identity = 55/149 (36.91%), Postives = 77/149 (51.68%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD------LYSFSLDL-------TNGRYAPELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDC 137
            + L GVA G + G++ D +G  R +    ++ PGL  NLFSV  A    VA++F  DNPRLE+     P+Q L  D      +YS  + L       T    AP+        A LW R +GH+N ++LD+L+K   NGV + G V DC
Sbjct:  288 HVLKGVATGTIFGAVTDDNGNDRHVSFRGILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESRDVVFPMQTLGLDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALKVESADLWFRRMGHINGKTLDVLRKEPVNGVHYTGDVNDC 436

[Close]

BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5JH28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH28_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-18
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = 0

Query:    2 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD------LYSFSLDL-------TNGRYAPELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPD 136
            + L GVA   + G++ D +G  R +    ++ PGL  NLFSV  A    VA++F  DNPRLE+     P+Q L  D      ++S  + L       T    AP+        A LWHR +GH+N +SLD+L+K   NGV + G V D
Sbjct:  427 HVLKGVATATIFGAVTDDNGNNRHVSFRVILVPGLGTNLFSVTLATLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIHSIEVKLGGEPGGPTVLGDAPDALALKVESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKD 574

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J9Q7_9PHAE	3.490e-21	36.54	gag_pre-integrs domain-containing protein n=1 Tax=...	[more]
A0A6H5KDX9_9PHAE	4.660e-21	35.26	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JVF6_9PHAE	4.790e-21	35.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	2.370e-20	36.54	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JKW9_9PHAE	4.280e-20	37.59	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KJN3_9PHAE	4.290e-20	36.54	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JYB5_9PHAE	4.300e-20	36.54	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KYQ2_9PHAE	1.440e-19	36.84	CCHC-type domain-containing protein (Fragment) n=1...	[more]
A0A6H5KB94_9PHAE	6.990e-19	36.91	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JH28_9PHAE	1.680e-18	36.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 97..144 e-value: 4.8E-7 score: 29.5

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig14533	contig	H-paniculata_contig14533:6110..6541 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig14533.2717.1	mRNA_H-paniculata_contig14533.2717.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig14533 6110..6541 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig14533.2717.1 ID=prot_H-paniculata_contig14533.2717.1|Name=mRNA_H-paniculata_contig14533.2717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
GYQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQND
VASIFDMDNPRLEANKFTLPLQELASDLYSFSLDLTNGRYAPELAMQAAA
DATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom