mRNA_H-paniculata_contig14533.2717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14533.2717.1
Unique NamemRNA_H-paniculata_contig14533.2717.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.490e-21
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD------LYSFSLDL-------TNGRYAPELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 432
            + L GV  G + G++ D +G  R +    ++ PGL  NLFSV  A    VA++F  DNPRLE+     P+Q L  D      +YS  + L       T    AP+        A LWHR +GH+N ++LD+L+K   NGV + G V  C VC + K
Sbjct:  387 HVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGK 542
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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5KDX9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.660e-21
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASDLYS----FSLDLTNGRY---------APELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 432
            + L GVA G + G++ D +G +R +    ++ PG   NLFSV  A    VA++F  DN RL++     P+Q L  D  +    +S+++  GR          AP+        A LWHR +GH+N +SLD+L+K   +GV + G V DC VC + K
Sbjct:  330 HVLKGVATGTIVGAVTDDNGNERHVLFRVILVPGPGTNLFSVTLAMLKGVATLFHPDNTRLDSGDVVFPMQTLGVDATTGKRIYSIEVKLGREPGGPTVLGDAPDALALKVESADLWHRHMGHINGKSLDVLRKEPVHGVDYTGDVKDCSVCPLGK 485
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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.790e-21
Identity = 55/156 (35.26%), Postives = 79/156 (50.64%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD------LYSFSLDLTNGRYAPELAMQA-------AADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 432
            + L GV  G + G++ D +G  R +    ++ PGL  NLFSV  A    +A++F  DNPRLE+     P+Q L  D      +YS  + L      P +   A          A LWHR +G +N +SLD+L+K+  N V + G V DC VC + K
Sbjct:  640 HVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGK 795
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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.370e-20
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD-----LYSFSLDL---TNGRYAPE-----LAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 432
            + L GV  G+L G++ D  G  R +    ++ PGL  NLFSV  A  N VAS+F  DNPRLE+    +P++    D       S ++ L     GR  P      LA++    A LWHR +GH+N +SLD+L+++  +G+ + G V DC  C + K
Sbjct:  461 HVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGK 615
[Close]
BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.280e-20
Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 1 
Query:   10 LDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASDLYSFSLDLTNGRYAPELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 432
            L GVA G + G++ D +G  R +    ++ PGL   LFSV  A    VA++   DN RLE+     P+Q L        +D T G+    + +++A    LWHR +GH+N +SLD+L+K   NGV + G V DC VC + K
Sbjct:  553 LKGVATGTIFGAVTDDNGNDRHVSFCVVLVPGLGTKLFSVTLAMLKGVATLCHPDNHRLESGDVVFPMQTLG-------VDATTGKRIYSIEVESA---DLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGK 683
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BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.290e-20
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD-----LYSFSLDL---TNGRYAPE-----LAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 432
            + L GV  G+L G++ D  G  R +    ++ PGL  NLFSV  A  N VAS+F  DNPRLE+    +P++    D       S ++ L     GR  P      LA++    A LWHR +GH+N +SLD+L+++  +G+ + G V DC  C + K
Sbjct:  461 HVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGK 615
[Close]
BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.300e-20
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD-----LYSFSLDL---TNGRYAPE-----LAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK 432
            + L GV  G+L G++ D  G  R +    ++ PGL  NLFSV  A  N VAS+F  DNPRLE+    +P++    D       S ++ L     GR  P      LA++    A LWHR +GH+N +SLD+L+++  +G+ + G V DC  C + K
Sbjct:  366 HVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGK 520
[Close]
BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-19
Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD-----LYSFSLDL---TNGRYAPE-----LAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVC 420
            + L GV  G+L G++ D  G  R +    ++ PGL  NLFSV  A  N VAS+F  DNPRLE+    +P++    D       S ++ L     GR  P      LA++    A LWHR +GH+N +SLD+L+++  +G+ + G V DC  C
Sbjct:  461 HVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVET-ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSAC 611
[Close]
BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5KB94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB94_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.990e-19
Identity = 55/149 (36.91%), Postives = 77/149 (51.68%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD------LYSFSLDL-------TNGRYAPELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDC 411
            + L GVA G + G++ D +G  R +    ++ PGL  NLFSV  A    VA++F  DNPRLE+     P+Q L  D      +YS  + L       T    AP+        A LW R +GH+N ++LD+L+K   NGV + G V DC
Sbjct:  288 HVLKGVATGTIFGAVTDDNGNDRHVSFRGILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESRDVVFPMQTLGLDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALKVESADLWFRRMGHINGKTLDVLRKEPVNGVHYTGDVNDC 436
[Close]
BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Match: A0A6H5JH28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH28_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-18
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = 1 
Query:    4 YQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQNDVASIFDMDNPRLEANKFTLPLQELASD------LYSFSLDL-------TNGRYAPELAMQAAADATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPD 408
            + L GVA   + G++ D +G  R +    ++ PGL  NLFSV  A    VA++F  DNPRLE+     P+Q L  D      ++S  + L       T    AP+        A LWHR +GH+N +SLD+L+K   NGV + G V D
Sbjct:  427 HVLKGVATATIFGAVTDDNGNNRHVSFRVILVPGLGTNLFSVTLATLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIHSIEVKLGGEPGGPTVLGDAPDALALKVESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKD 574
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14533.2717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9Q7_9PHAE3.490e-2136.54gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KDX9_9PHAE4.660e-2135.26CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JVF6_9PHAE4.790e-2135.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE2.370e-2036.54Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JKW9_9PHAE4.280e-2037.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJN3_9PHAE4.290e-2036.54Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE4.300e-2036.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYQ2_9PHAE1.440e-1936.84CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KB94_9PHAE6.990e-1936.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH28_9PHAE1.680e-1836.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14533contigH-paniculata_contig14533:6110..6541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929157.1647482-CDS-H-paniculata_contig14533:6109..65411622929157.1647482-CDS-H-paniculata_contig14533:6109..6541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14533 6110..6541 +
1691480752.9986525-CDS-H-paniculata_contig14533:6109..65411691480752.9986525-CDS-H-paniculata_contig14533:6109..6541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14533 6110..6541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14533.2717.1prot_H-paniculata_contig14533.2717.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14533 6110..6541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14533.2717.1

>prot_H-paniculata_contig14533.2717.1 ID=prot_H-paniculata_contig14533.2717.1|Name=mRNA_H-paniculata_contig14533.2717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
GYQLDGVARGLLRGSIVDGDGVQRFIQLSCLVAPGLWRNLFSVKQAAQND
VASIFDMDNPRLEANKFTLPLQELASDLYSFSLDLTNGRYAPELAMQAAA
DATLWHRWLGHLNRRSLDLLKKRYHNGVSFDGTVPDCDVCAVRK
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mRNA from alignment at H-paniculata_contig14533:6110..6541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14533.2717.1 ID=mRNA_H-paniculata_contig14533.2717.1|Name=mRNA_H-paniculata_contig14533.2717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig14533:6110..6541+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATACCAACTGGATGGGGTTGCACGAGGACTACTCCGTGGCAGCATCGT
CGATGGCGACGGAGTCCAGCGCTTCATCCAACTCTCGTGTCTGGTTGCAC
CTGGCTTGTGGCGCAACCTGTTCTCGGTAAAGCAAGCGGCGCAAAACGAC
GTCGCGTCGATCTTCGATATGGACAACCCTAGACTGGAGGCAAACAAATT
CACCCTACCGCTTCAAGAGCTGGCGAGTGACCTCTACTCCTTCTCGCTGG
ATCTCACCAACGGGAGGTACGCGCCAGAGCTGGCAATGCAAGCTGCGGCT
GATGCCACCCTATGGCATCGGTGGCTTGGACACCTCAACCGCAGAAGCCT
GGACCTTCTGAAGAAGAGATACCACAATGGGGTGAGCTTCGATGGGACTG
TTCCAGATTGCGACGTGTGCGCCGTGCGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig14533:6110..6541+

>mRNA_H-paniculata_contig14533.2717.1 ID=mRNA_H-paniculata_contig14533.2717.1|Name=mRNA_H-paniculata_contig14533.2717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig14533:6110..6541+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATACCAACTGGATGGGGTTGCACGAGGACTACTCCGTGGCAGCATCGT
CGATGGCGACGGAGTCCAGCGCTTCATCCAACTCTCGTGTCTGGTTGCAC
CTGGCTTGTGGCGCAACCTGTTCTCGGTAAAGCAAGCGGCGCAAAACGAC
GTCGCGTCGATCTTCGATATGGACAACCCTAGACTGGAGGCAAACAAATT
CACCCTACCGCTTCAAGAGCTGGCGAGTGACCTCTACTCCTTCTCGCTGG
ATCTCACCAACGGGAGGTACGCGCCAGAGCTGGCAATGCAAGCTGCGGCT
GATGCCACCCTATGGCATCGGTGGCTTGGACACCTCAACCGCAGAAGCCT
GGACCTTCTGAAGAAGAGATACCACAATGGGGTGAGCTTCGATGGGACTG
TTCCAGATTGCGACGTGTGCGCCGTGCGGAAGGGATACCAACTGGATGGG
GTTGCACGAGGACTACTCCGTGGCAGCATCGTCGATGGCGACGGAGTCCA
GCGCTTCATCCAACTCTCGTGTCTGGTTGCACCTGGCTTGTGGCGCAACC
TGTTCTCGGTAAAGCAAGCGGCGCAAAACGACGTCGCGTCGATCTTCGAT
ATGGACAACCCTAGACTGGAGGCAAACAAATTCACCCTACCGCTTCAAGA
GCTGGCGAGTGACCTCTACTCCTTCTCGCTGGATCTCACCAACGGGAGGT
ACGCGCCAGAGCTGGCAATGCAAGCTGCGGCTGATGCCACCCTATGGCAT
CGGTGGCTTGGACACCTCAACCGCAGAAGCCTGGACCTTCTGAAGAAGAG
ATACCACAATGGGGTGAGCTTCGATGGGACTGTTCCAGATTGCGACGTGT
GCGCCGTGCGGAAG
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