mRNA_H-paniculata_contig1453.2713.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1453.2713.1
Unique NamemRNA_H-paniculata_contig1453.2713.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1453.2713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1453contigH-paniculata_contig1453:639..2013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size885
Cds size885
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1453.2713.1prot_H-paniculata_contig1453.2713.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1453 639..2013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.8082666-CDS-H-paniculata_contig1453:638..8681622929156.8082666-CDS-H-paniculata_contig1453:638..868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1453 639..868 -
1691480752.7578995-CDS-H-paniculata_contig1453:638..8681691480752.7578995-CDS-H-paniculata_contig1453:638..868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1453 639..868 -
1622929156.817659-CDS-H-paniculata_contig1453:965..12891622929156.817659-CDS-H-paniculata_contig1453:965..1289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1453 966..1289 -
1691480752.7675784-CDS-H-paniculata_contig1453:965..12891691480752.7675784-CDS-H-paniculata_contig1453:965..1289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1453 966..1289 -
1622929156.8286176-CDS-H-paniculata_contig1453:1682..20131622929156.8286176-CDS-H-paniculata_contig1453:1682..2013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1453 1683..2013 -
1691480752.7766814-CDS-H-paniculata_contig1453:1682..20131691480752.7766814-CDS-H-paniculata_contig1453:1682..2013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1453 1683..2013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1453.2713.1

>prot_H-paniculata_contig1453.2713.1 ID=prot_H-paniculata_contig1453.2713.1|Name=mRNA_H-paniculata_contig1453.2713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=295bp
DGNTPLFLACGNGHSSVAKVLLKAGADANIKCGKHQFTPLQEAGNKGHYR
MLQELAEAGADISVRSRNGLMVLHLVVLSGKSAGVFEALRLGADITVQDD
SGSTALMLCAACLMNYPNIVRQLLVSGADTSVADTQGSTALMYGAESGSS
DITLNLMRAGANMETKNEYNVPALMFAARFGHLKVVRLLCDAGADSGSQN
AKERTSLLFAANNGALGSVRQLLEAGAGTSAADTKGRTPLMYCVAKVGLD
EVAQDLVNAGADTEATDNEESTARILAAMRGRLEIVRILLKAGAN
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mRNA from alignment at H-paniculata_contig1453:639..2013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1453.2713.1 ID=mRNA_H-paniculata_contig1453.2713.1|Name=mRNA_H-paniculata_contig1453.2713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1375bp|location=Sequence derived from alignment at H-paniculata_contig1453:639..2013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGTAACACTCCTCTCTTTCTCGCCTGCGGCAACGGACACTCTAGTGT
CGCGAAGGTGTTGCTTAAGGCCGGGGCCGACGCTAACATCAAGTGCGGCA
AACACCAGTTTACGCCCCTTCAAGAAGCTGGCAATAAGGGACATTACCGA
ATGTTGCAAGAGCTCGCCGAGGCAGGCGCGGATATCTCGGTTAGGAGCAG
AAATGGTTTGATGGTCCTTCATCTCGTGGTACTATCCGGAAAATCAGCAG
GGGTTTTTGAAGCATTGCGACTGGGAGCGGACATAACTGTGCAGGATGAT
TCTGGGTCCACTGCTCTCATGCTATGTGCAGGTAACGCTGAAAAAAAAGA
AGCATAATTGAAAGCCAAAATCCTACTCGACCCGGGAGCTAATTTTCACA
TTGCCAAAGGTTAAACTGCTTGGTTTTTCGCTGCACGGTTGGGAAGTCAT
AACATTGTTCGAGTACTCTTAGACGCAGAAGAAAATGTATATGGCCGGGC
AGATGGTGATTGGGCGGCCTTGCTACTCGCAGCTCGCGCGGGGCACTTCG
AAGTGGTACGTCTCCTCTGGGAAGCTGGGGCGGACTATGCATGGTCAACC
ACTGACAGGAGAACATCACTGACATTCGCAGCGAGACATGGACATTTGAG
GGTGGTACAGTAGCTTGTTAGAGCTGGTGCGGATGTGAGCCAGGGGCCGA
TAAAGTGGGAACCGCTACGCGTAGCGTGCTTAATGAACTACCCTAATATT
GTACGACAGCTGCTAGTATCTGGAGCTGACACGTCTGTTGCAGATACCCA
AGGCAGTACAGCTTTAATGTATGGTGCTGAATCCGGTTCGAGTGATATAA
CGCTGAATTTGATGAGAGCGGGAGCAAACATGGAGACAAAAAACGAATAC
AATGTCCCAGCTTTGATGTTTGCAGCTAGGTTCGGGCACTTGAAAGTGGT
GCGACTCTTGTGCGATGCTGGGGCAGACTCCGGATCACAAAATGCCAAGG
AGAGGACATCTTTATTGTTCGCAGCCAATAACGGGGCACTTGGAAGTGGT
ACAGCAGTTGGTGAGTGCTGGCACGAATGTAAACTAGGGCCCGGTAAATT
GGAAGCCGCTCCTGGTAGTGTGTGTAGCTAACCAGCCTGAAACAGTAAGA
CAACTGCTAGAGGCCGGTGCAGGCACGTCCGCAGCAGACACTAAAGGGCG
CACACCTTTGATGTATTGCGTGGCCAAAGTCGGATTGGATGAGGTCGCTC
AAGATTTAGTGAATGCTGGAGCAGATACGGAGGCTACAGACAACGAGGAA
AGTACCGCGCGGATTCTTGCGGCTATGCGCGGGCGCTTGGAGATTGTGCG
GATTCTGTTGAAGGCAGGAGCGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig1453:639..2013-

>mRNA_H-paniculata_contig1453.2713.1 ID=mRNA_H-paniculata_contig1453.2713.1|Name=mRNA_H-paniculata_contig1453.2713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at H-paniculata_contig1453:639..2013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGTAACACTCCTCTCTTTCTCGCCTGCGGCAACGGACACTCTAGTGT
CGCGAAGGTGTTGCTTAAGGCCGGGGCCGACGCTAACATCAAGTGCGGCA
AACACCAGTTTACGCCCCTTCAAGAAGCTGGCAATAAGGGACATTACCGA
ATGTTGCAAGAGCTCGCCGAGGCAGGCGCGGATATCTCGGTTAGGAGCAG
AAATGGTTTGATGGTCCTTCATCTCGTGGTACTATCCGGAAAATCAGCAG
GGGTTTTTGAAGCATTGCGACTGGGAGCGGACATAACTGTGCAGGATGAT
TCTGGGTCCACTGCTCTCATGCTATGTGCAGGACGGTAACACTCCTCTCT
TTCTCGCCTGCGGCAACGGACACTCTAGTGTCGCGAAGGTGTTGCTTAAG
GCCGGGGCCGACGCTAACATCAAGTGCGGCAAACACCAGTTTACGCCCCT
TCAAGAAGCTGGCAATAAGGGACATTACCGAATGTTGCAAGAGCTCGCCG
AGGCAGGCGCGGATATCTCGGTTAGGAGCAGAAATGGTTTGATGGTCCTT
CATCTCGTGGTACTATCCGGAAAATCAGCAGGGGTTTTTGAAGCATTGCG
ACTGGGAGCGGACATAACTGTGCAGGATGATTCTGGGTCCACTGCTCTCA
TGCTATGTGCAGCGTGCTTAATGAACTACCCTAATATTGTACGACAGCTG
CTAGTATCTGGAGCTGACACGTCTGTTGCAGATACCCAAGGCAGTACAGC
TTTAATGTATGGTGCTGAATCCGGTTCGAGTGATATAACGCTGAATTTGA
TGAGAGCGGGAGCAAACATGGAGACAAAAAACGAATACAATGTCCCAGCT
TTGATGTTTGCAGCTAGGTTCGGGCACTTGAAAGTGGTGCGACTCTTGTG
CGATGCTGGGGCAGACTCCGGATCACAAAATGCCAAGGAGAGGACATCTT
TATTGTTCGCAGCCAATAACGGGGCACTTGGAAGTGCGTGCTTAATGAAC
TACCCTAATATTGTACGACAGCTGCTAGTATCTGGAGCTGACACGTCTGT
TGCAGATACCCAAGGCAGTACAGCTTTAATGTATGGTGCTGAATCCGGTT
CGAGTGATATAACGCTGAATTTGATGAGAGCGGGAGCAAACATGGAGACA
AAAAACGAATACAATGTCCCAGCTTTGATGTTTGCAGCTAGGTTCGGGCA
CTTGAAAGTGGTGCGACTCTTGTGCGATGCTGGGGCAGACTCCGGATCAC
AAAATGCCAAGGAGAGGACATCTTTATTGTTCGCAGCCAATAACGGGGCA
CTTGGAAGTGTAAGACAACTGCTAGAGGCCGGTGCAGGCACGTCCGCAGC
AGACACTAAAGGGCGCACACCTTTGATGTATTGCGTGGCCAAAGTCGGAT
TGGATGAGGTCGCTCAAGATTTAGTGAATGCTGGAGCAGATACGGAGGCT
ACAGACAACGAGGAAAGTACCGCGCGGATTCTTGCGGCTATGCGCGGGCG
CTTGGAGATTGTGCGGATTCTGTTGAAGGCAGGAGCGAATTAAGACAACT
GCTAGAGGCCGGTGCAGGCACGTCCGCAGCAGACACTAAAGGGCGCACAC
CTTTGATGTATTGCGTGGCCAAAGTCGGATTGGATGAGGTCGCTCAAGAT
TTAGTGAATGCTGGAGCAGATACGGAGGCTACAGACAACGAGGAAAGTAC
CGCGCGGATTCTTGCGGCTATGCGCGGGCGCTTGGAGATTGTGCGGATTC
TGTTGAAGGCAGGAGCGAAT
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