mRNA_H-paniculata_contig14521.2709.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14521.2709.1
Unique NamemRNA_H-paniculata_contig14521.2709.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: D7G4N5_ECTSI (3'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N5_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.900e-40
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            RNSPLSVEIARVIEIGVRDSQALDTEALCI+GGEKVWQLRCDVHILDHGGNLIDA T+ATMAALRHFRRP
Sbjct:   99 RNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKVWQLRCDVHILDHGGNLIDACTLATMAALRHFRRP 168
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BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: A0A6H5KDM4_9PHAE (RNase_PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM4_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.800e-32
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            RNSPLSVEIARVIEIGVRDSQALDTEALCI+GGEK   LRCDVHILDHGGNLIDA T+ATMAALRHFRRP
Sbjct:   99 RNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEK---LRCDVHILDHGGNLIDACTLATMAALRHFRRP 165
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BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: A0A835ZEC1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.000e-27
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            R SPL+ EI R+IE G+RDSQALDTE LCI+ GEKVWQLR DVHILD+GGNL+DA+ +A +AAL+HFRRP
Sbjct:  100 RASPLATEITRIIERGIRDSQALDTETLCIVAGEKVWQLRVDVHILDNGGNLVDAAALAAIAALQHFRRP 169
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BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: A0A662Y5E3_9STRA (RNase_PH domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5E3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.070e-23
Identity = 41/69 (59.42%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    4 NSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            +S  + E+AR++E GVR+S+ALDTEAL ++ GEKVW + C VH+LDHGGNL+DA+++A +AAL H+RRP
Sbjct:  111 SSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVLDHGGNLVDAASLAAIAALMHYRRP 179
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BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: A0A8K1C7Y8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Y8_PYTOL)

HSP 1 Score: 99.4 bits (246), Expect = 9.450e-23
Identity = 41/70 (58.57%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            R SPL+VE+AR+++ G+R+ +ALDTEAL I+ GEKVW + C++H++DHGGNLID  ++A +AA+ HFRRP
Sbjct:  102 RPSPLAVELARIVDRGIRECRALDTEALAIVAGEKVWSITCNIHVVDHGGNLIDCVSLAAIAAMMHFRRP 171
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BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: A0A2P6N4M7_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N4M7_9EUKA)

HSP 1 Score: 97.1 bits (240), Expect = 1.170e-22
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            + S   +E+ RV+E G+R+S+A+D+EALCI+  EKVW +RCD+HILDH GNL D ++IAT+AAL HFRRP
Sbjct:  101 KQSDQFIELGRVVERGLRESRAIDSEALCIIASEKVWSVRCDIHILDHVGNLTDCASIATIAALMHFRRP 170
[Close]
BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: A0A7S1CIZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIZ9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.230e-22
Identity = 42/69 (60.87%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRR 207
            R SPL+VEI R++E  +RD++A+DTEALCI+ GEKVW LRCDV ++D GGN+IDA+ ++ +A+L HFRR
Sbjct:   93 RPSPLAVEIGRIVERCLRDARAIDTEALCIVAGEKVWSLRCDVRVVDDGGNIIDAAALSAVASLCHFRR 161
[Close]
BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: K3X4Z2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4Z2_GLOUD)

HSP 1 Score: 97.4 bits (241), Expect = 4.920e-22
Identity = 39/70 (55.71%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            R SP++VE+AR+++ G+R+ +ALDTEAL I+ GEKVW + C++H++DHGGNLID  ++A +AA+ H+RRP
Sbjct:  102 RPSPMAVELARIVDRGIRECRALDTEALAIIAGEKVWAITCNIHVVDHGGNLIDCVSLAAIAAMMHYRRP 171
[Close]
BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: A0A5D6YD22_9STRA (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD22_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.060e-22
Identity = 41/70 (58.57%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            R SPL+VE+AR++E G+R+ +ALDTEAL I+ GEKVW + C +H++DHGGNL+D  ++A +AAL H+RRP
Sbjct:   10 RPSPLAVELARIVERGIRECRALDTEALAIVAGEKVWAITCTLHVVDHGGNLVDCVSLAAIAALLHYRRP 79
[Close]
BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Match: A0A2D4C8I4_PYTIN (Exosome complex exonuclease RRP45-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8I4_PYTIN)

HSP 1 Score: 97.1 bits (240), Expect = 6.530e-22
Identity = 39/70 (55.71%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    1 RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGGNLIDASTIATMAALRHFRRP 210
            R SPL++E+AR+++ G+R+ +ALDTEAL I+ GEKVW + C +H++DHGGNLID  ++A +AA+ H+RRP
Sbjct:  102 RPSPLAIELARIVDRGIRECRALDTEALAIVAGEKVWSITCTIHVVDHGGNLIDCVSLAAIAAMMHYRRP 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14521.2709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4N5_ECTSI1.900e-4095.713'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocar... [more]
A0A6H5KDM4_9PHAE2.800e-3291.43RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZEC1_9STRA5.000e-2772.86Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A662Y5E3_9STRA2.070e-2359.42RNase_PH domain-containing protein (Fragment) n=2 ... [more]
A0A8K1C7Y8_PYTOL9.450e-2358.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P6N4M7_9EUKA1.170e-2260.00Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A7S1CIZ9_9STRA1.230e-2260.87Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
K3X4Z2_GLOUD4.920e-2255.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6YD22_9STRA6.060e-2258.57Kinesin motor domain-containing protein (Fragment)... [more]
A0A2D4C8I4_PYTIN6.530e-2255.71Exosome complex exonuclease RRP45-like protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14521contigH-paniculata_contig14521:375..1167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04812
Exons2
Model size222
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.3e-31
Seed eggNOG ortholog2880.D7G4N5
KEGG koko:K03678,ko:K10397,ko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1614@2759
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.3044498-CDS-H-paniculata_contig14521:374..4911622929156.3044498-CDS-H-paniculata_contig14521:374..491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14521 375..491 -
1691480752.5203304-CDS-H-paniculata_contig14521:374..4911691480752.5203304-CDS-H-paniculata_contig14521:374..491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14521 375..491 -
1622929156.4797404-CDS-H-paniculata_contig14521:1062..11671622929156.4797404-CDS-H-paniculata_contig14521:1062..1167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14521 1063..1167 -
1691480752.532613-CDS-H-paniculata_contig14521:1062..11671691480752.532613-CDS-H-paniculata_contig14521:1062..1167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14521 1063..1167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14521.2709.1prot_H-paniculata_contig14521.2709.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14521 375..1167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14521.2709.1

>prot_H-paniculata_contig14521.2709.1 ID=prot_H-paniculata_contig14521.2709.1|Name=mRNA_H-paniculata_contig14521.2709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
RNSPLSVEIARVIEIGVRDSQALDTEALCILGGEKVWQLRCDVHILDHGG
NLIDASTIATMAALRHFRRPGLLS
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mRNA from alignment at H-paniculata_contig14521:375..1167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14521.2709.1 ID=mRNA_H-paniculata_contig14521.2709.1|Name=mRNA_H-paniculata_contig14521.2709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=793bp|location=Sequence derived from alignment at H-paniculata_contig14521:375..1167- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAATTCTCCACTATCGGTGGAGATCGCTCGAGTGATCGAAATCGGAGT
GCGGGATTCCCAGGCGCTGGACACCGAGGCACTGTGCATTCTTGGCGGCG
AAAAGGTATGTATCCTTGGGTTCGACACTATCTTTGCATTAATCTTGGCC
CTGCAGAAATATTGCTGTAAAGGGAGTGGTGATGTGCTGGTGGTAGCTTC
GGAACGGTTTTACCTCGTTACTTGTATGGGTGTTTTTTTGCCTACAGGAA
CTTCTGTTTTTTGACCGTGGGTCTGAGCAACTGAATCTGTCTTCTGGTGA
GATGATAAATCAATCCGGTGGCGAAAATGATGGAAGCACTCCAGAACTTT
CATCTTTCGAAGAGTTTCCAACTATTATGTTGCGCCAAGATAAACAGAAC
GTACGCCTCTGAGCTTACATATTGGAGCCATATCTGTTTGGAAAAAAAAA
ACCGTGAACGAAGCCTGTTCAGTGAGCACCTGCCGAAAATAATCAGAGTT
TCCTTAGGTAGTAGTGGTCTATCCGATGCCCCTAAAATCATTGAAATAGT
TTTAGCTGTATGGTTCTGGCTCATTTTTCTAGGAATTTTACCTGCGGCAC
GTGTTTGATAGGTCGTCATTGACCTACATGACTGGAAAATGACAACGCCA
TCGGTGATGGGTGGGCGAAATCGCAGGTCTGGCAGCTGCGGTGCGATGTG
CACATCCTCGATCACGGTGGGAATCTGATCGACGCTTCTACCATTGCGAC
CATGGCGGCGTTACGACATTTCCGACGGCCAGGTTTGTTGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig14521:375..1167-

>mRNA_H-paniculata_contig14521.2709.1 ID=mRNA_H-paniculata_contig14521.2709.1|Name=mRNA_H-paniculata_contig14521.2709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig14521:375..1167- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCAATTCTCCACTATCGGTGGAGATCGCTCGAGTGATCGAAATCGGAGT
GCGGGATTCCCAGGCGCTGGACACCGAGGCACTGTGCATTCTTGGCGGCG
AAAAGCGCAATTCTCCACTATCGGTGGAGATCGCTCGAGTGATCGAAATC
GGAGTGCGGGATTCCCAGGCGCTGGACACCGAGGCACTGTGCATTCTTGG
CGGCGAAAAGGTCTGGCAGCTGCGGTGCGATGTGCACATCCTCGATCACG
GTGGGAATCTGATCGACGCTTCTACCATTGCGACCATGGCGGCGTTACGA
CATTTCCGACGGCCAGGTTTGTTGTCGGTCTGGCAGCTGCGGTGCGATGT
GCACATCCTCGATCACGGTGGGAATCTGATCGACGCTTCTACCATTGCGA
CCATGGCGGCGTTACGACATTTCCGACGGCCAGGTTTGTTGTCG
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