mRNA_H-paniculata_contig1452.2708.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1452.2708.1
Unique NamemRNA_H-paniculata_contig1452.2708.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1452.2708.1 vs. uniprot
Match: A0A6H5KI56_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI56_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 5.030e-85
Identity = 181/348 (52.01%), Postives = 225/348 (64.66%), Query Frame = 1 
Query:    7 FGEGSNPGGALKGAIVWCARLSMAISQDPATARRLAQYFEKAYDSELVDESELFAVAREAAEVCYAAEAVGDNDGDGVMTSSCSGARVADPSGLSLVCSAVMIVLTWSDQADLSSNWQLRLLGAIQQGLVAR-EPRRLVLPSAGGGAVTPGAKAAAASAEKAERRCLARLTEVVFKNKLLLEGKKQSRLVRAAHLSAAQALFDADPDGAVKDLFASRVFEALKDPDAMIRVAAGGATRVLFRRFQPERHENIFNTMLAKLPPVVEVDQK-------QEGDGGXXXXXGDRVTASELAYAKLAAGLRFTDNKIGYYVIARREFEATSLGVVKDMAASSARVIRVALDHL 1026
            FGEG  P GALKGA+VWCARLS+AIS   +TARRL+Q FEKAY   LVDE+ELFAVAR AAEV +  +  G+ +G         G       GLSLV SAV +V+ ++D+ D SS W LRLLG +QQ +VAR +     L   G            ++A++AER CL RL   VFK+KL+L G K SRLVRAA +SAA+A+FDA PD  ++D FAS VF    D D+ +R AA GATR+LFRRF PE+H  IF T+L +LPPVV VD +       +EGDG         + ASE AYA+L+ G   ++N+  Y+V+ RREFEATSL  V DMAASSARV R AL HL
Sbjct: 1064 FGEGKEPEGALKGAVVWCARLSLAISPHSSTARRLSQVFEKAYGDGLVDEAELFAVARAAAEVFFTGKDEGEEEGADXXXXXXEGGPRGGRGGLSLVRSAVELVVAYADEDDRSSGWLLRLLGVVQQTVVARGQQGGFPLTPRGXXXXXXXXXXLGSAADEAERDCLVRLAASVFKDKLVLAGAKHSRLVRAAQVSAARAIFDAFPDDGLRDRFASLVFRRTTDLDSGVRSAAVGATRILFRRFSPEKHGAIFATVLGRLPPVVAVDDRVELEDDDEEGDGEGAMM----MLASEQAYARLSVGR--SENERRYFVVCRREFEATSLVTVADMAASSARVTRAALYHL 1405
[Close]
BLAST of mRNA_H-paniculata_contig1452.2708.1 vs. uniprot
Match: D8LNB7_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB7_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 2.510e-80
Identity = 186/351 (52.99%), Postives = 226/351 (64.39%), Query Frame = 1 
Query:    7 FGEGSNPGGALKGAIVWCARLSMAISQDPATARRLAQYFEKAYDSELVDESELFAVAREAAEVCYAAEAVGDNDGDGVMTSSCSGARVADPSG-----LSLVCSAVMIVLTWSDQADLSSNWQLRLLGAIQQGLVAR-EPRRLVLPSAGGGAVTPGAKAAAASAEKAERRCLARLTEVVFKNKLLLEGKKQSRLVRAAHLSAAQALFDADPDGAVKDLFASRVFEALKDPDAMIRVAAGGATRVLFRRFQPERHENIFNTMLAKLPPVVEVDQKQEGDGGXXXXX-----GDRVTASELAYAKLAAGLRFTDNKIGYYVIARREFEATSLGVVKDMAASSARVIRVALDHL 1026
            FGEG  P GALKGA+VWCARLS+AIS  P+TARRL+Q FEKAY   LVDE+ELFAVAR AAEV +  E                              LSLV SAV +V+T++D+ D SS W LRLLG +QQ +VAR +     L   GGG        +AA   +AER CLARL   VFK+KL++ G K SRLVRAA +SAA+A+FDA PD  ++D FAS VF    D D+ +R AA GATR+LFRRF PE+H  IF T+L +LPPVV VD + E +  XXXXX        + ASE AYA+L+AG   ++N+  Y+V+ RREFEATSL  V DMAASSARV R AL HL
Sbjct: 1168 FGEGKEPEGALKGAVVWCARLSLAISPHPSTARRLSQVFEKAYGGGLVDEAELFAVARAAAEVFFTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLVRSAVKLVVTYADEDDRSSGWLLRLLGVVQQTVVARGQQGGFPLTPRGGGNDNNSNMGSAAG--EAERDCLARLAASVFKDKLVVAGAKHSRLVRAAQVSAARAIFDAFPDDGLRDRFASLVFRRTTDLDSGVRSAAVGATRILFRRFSPEKHGAIFATVLGRLPPVVVVDDRVELEDXXXXXXXXXEGATTMLASEQAYARLSAGR--SENERRYFVVCRREFEATSLVTVADMAASSARVTRAALYHL 1514
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1452.2708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KI56_9PHAE5.030e-8552.01Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LNB7_ECTSI2.510e-8052.99Non-specific serine/threonine protein kinase n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1452contigH-paniculata_contig1452:20737..25928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.3
Seed ortholog evalue7.7e-74
Seed eggNOG ortholog2880.D8LNB7
Preferred nameATM
KEGG koko:K04728
KEGG Pathwayko01524,ko03440,ko04064,ko04068,ko04110,ko04115,ko04210,ko04214,ko04218,ko05165,ko05166,ko05202,ko05206,map01524,map03440,map04064,map04068,map04110,map04115,map04210,map04214,map04218,map05165,map05166,map05202,map05206
KEGG ModuleM00295,M00691
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000706,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0000956,GO:0001541,GO:0001666,GO:0001756,GO:0001775,GO:0001894,GO:0001895,GO:0001932,GO:0001934,GO:0002200,GO:0002327,GO:0002329,GO:0002331,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0002562,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003002,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006464,GO:0006468,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006975,GO:0006977,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007095,GO:0007127,GO:0007131,GO:0007140,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007548,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008219,GO:0008285,GO:0008334,GO:0008340,GO:0008406,GO:0008585,GO:0008610,GO:0008630,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010243,GO:0010259,GO:0010332,GO:0010389,GO:0010468,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010942,GO:0010948,GO:0010965,GO:0010972,GO:0012501,GO:0014070,GO:0014074,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016301,GO:0016303,GO:0016310,GO:0016444,GO:0016458,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030071,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030183,GO:0030258,GO:0030330,GO:0030717,GO:0030888,GO:0030889,GO:0031000,GO:0031056,GO:0031058,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031347,GO:0031348,GO:0031399,GO:0031401,GO:0031503,GO:0031570,GO:0031571,GO:0031572,GO:0031577,GO:0031974,GO:0031981,GO:0032006,GO:0032007,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032212,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032944,GO:0032945,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033127,GO:0033129,GO:0033151,GO:0033554,GO:0034350,GO:0034351,GO:0034397,GO:0034641,GO:0034645,GO:0034655,GO:0035004,GO:0035173,GO:0035264,GO:0035282,GO:0035556,GO:0035825,GO:0036092,GO:0036211,GO:0036270,GO:0036289,GO:0036293,GO:0040007,GO:0040029,GO:0042113,GO:0042127,GO:0042157,GO:0042159,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042770,GO:0042981,GO:0043009,GO:0043030,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043279,GO:0043412,GO:0043516,GO:0043517,GO:0043523,GO:0043525,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044818,GO:0044819,GO:0044877,GO:0045017,GO:0045088,GO:0045132,GO:0045137,GO:0045141,GO:0045143,GO:0045321,GO:0045494,GO:0045786,GO:0045787,GO:0045814,GO:0045824,GO:0045839,GO:0045841,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0045937,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0046545,GO:0046649,GO:0046660,GO:0046700,GO:0046777,GO:0046834,GO:0046854,GO:0046983,GO:0047485,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048538,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048871,GO:0050000,GO:0050670,GO:0050672,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050864,GO:0050865,GO:0050866,GO:0050869,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051321,GO:0051402,GO:0051409,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0052742,GO:0060249,GO:0060255,GO:0060322,GO:0060429,GO:0060548,GO:0061053,GO:0061458,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070482,GO:0070663,GO:0070664,GO:0070727,GO:0070997,GO:0071044,GO:0071156,GO:0071158,GO:0071173,GO:0071174,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071481,GO:0071500,GO:0071704,GO:0071840,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072425,GO:0072431,GO:0072434,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090220,GO:0090304,GO:0090399,GO:0090407,GO:0097190,GO:0097193,GO:0097694,GO:0097695,GO:0098813,GO:0104004,GO:0140013,GO:0140096,GO:1900034,GO:1901214,GO:1901215,GO:1901216,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1901796,GO:1901798,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902275,GO:1902400,GO:1902402,GO:1902403,GO:1902531,GO:1902532,GO:1902533,GO:1902679,GO:1902749,GO:1902750,GO:1902806,GO:1902807,GO:1903046,GO:1903047,GO:1903432,GO:1903506,GO:1903507,GO:1903624,GO:1903626,GO:1903978,GO:1904262,GO:1904353,GO:1904354,GO:1904356,GO:1904358,GO:1904882,GO:1904884,GO:1905269,GO:1905818,GO:1905819,GO:1905843,GO:1990164,GO:1990391,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000278,GO:2000573,GO:2000816,GO:2001020,GO:2001022,GO:2001141,GO:2001228,GO:2001251,GO:2001252
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0892@1,KOG0892@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03032,ko03400
Exons6
Model size1028
Cds size1026
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1452.2708.1prot_H-paniculata_contig1452.2708.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1452 20737..25926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.1780107-CDS-H-paniculata_contig1452:20736..208651622929156.1780107-CDS-H-paniculata_contig1452:20736..20865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 20737..20865 +
1691480752.4567208-CDS-H-paniculata_contig1452:20736..208651691480752.4567208-CDS-H-paniculata_contig1452:20736..20865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 20737..20865 +
1622929156.1977499-CDS-H-paniculata_contig1452:21640..217241622929156.1977499-CDS-H-paniculata_contig1452:21640..21724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 21641..21724 +
1691480752.4710712-CDS-H-paniculata_contig1452:21640..217241691480752.4710712-CDS-H-paniculata_contig1452:21640..21724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 21641..21724 +
1622929156.2086334-CDS-H-paniculata_contig1452:22419..225811622929156.2086334-CDS-H-paniculata_contig1452:22419..22581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 22420..22581 +
1691480752.4800978-CDS-H-paniculata_contig1452:22419..225811691480752.4800978-CDS-H-paniculata_contig1452:22419..22581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 22420..22581 +
1622929156.2215455-CDS-H-paniculata_contig1452:23957..241451622929156.2215455-CDS-H-paniculata_contig1452:23957..24145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 23958..24145 +
1691480752.4901204-CDS-H-paniculata_contig1452:23957..241451691480752.4901204-CDS-H-paniculata_contig1452:23957..24145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 23958..24145 +
1622929156.231943-CDS-H-paniculata_contig1452:24779..251361622929156.231943-CDS-H-paniculata_contig1452:24779..25136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 24780..25136 +
1691480752.4998913-CDS-H-paniculata_contig1452:24779..251361691480752.4998913-CDS-H-paniculata_contig1452:24779..25136Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 24780..25136 +
1622929156.2627692-CDS-H-paniculata_contig1452:25820..259261622929156.2627692-CDS-H-paniculata_contig1452:25820..25926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 25821..25926 +
1691480752.5098982-CDS-H-paniculata_contig1452:25820..259261691480752.5098982-CDS-H-paniculata_contig1452:25820..25926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1452 25821..25926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1452.2708.1

>prot_H-paniculata_contig1452.2708.1 ID=prot_H-paniculata_contig1452.2708.1|Name=mRNA_H-paniculata_contig1452.2708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
GVFGEGSNPGGALKGAIVWCARLSMAISQDPATARRLAQYFEKAYDSELV
DESELFAVAREAAEVCYAAEAVGDNDGDGVMTSSCSGARVADPSGLSLVC
SAVMIVLTWSDQADLSSNWQLRLLGAIQQGLVAREPRRLVLPSAGGGAVT
PGAKAAAASAEKAERRCLARLTEVVFKNKLLLEGKKQSRLVRAAHLSAAQ
ALFDADPDGAVKDLFASRVFEALKDPDAMIRVAAGGATRVLFRRFQPERH
ENIFNTMLAKLPPVVEVDQKQEGDGGEGGGGGDRVTASELAYAKLAAGLR
FTDNKIGYYVIARREFEATSLGVVKDMAASSARVIRVALDHL
back to top

mRNA from alignment at H-paniculata_contig1452:20737..25928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1452.2708.1 ID=mRNA_H-paniculata_contig1452.2708.1|Name=mRNA_H-paniculata_contig1452.2708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5192bp|location=Sequence derived from alignment at H-paniculata_contig1452:20737..25928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTATTCGGGGAGGGCAGTAACCCCGGCGGGGCGTTGAAGGGGGCTAT
TGTGTGGTGCGCGCGGCTTTCCATGGCCATTAGCCAGGACCCCGCGACCG
CGCGGCGCTTGGCTCAGTATTTTGAGAAGGTGAAGGAGGAGTAGAGCAAC
AGGCAATGGCTGGCATTGCACCACCGCATGCATGCAAGGGAGACTGGAAT
TACTCAAAAATTGAGACATGAGGACCTACTAGTAAAACGTTTTTTTTGTC
CAAATAATTTTCTACTTGAACTTGAAATATGGATGAGGGGAGGTTCGCAA
GGCTGCATATGTGTGCCGGGATATTGATGTTGATCATCACCTTCTGCGTG
TATGTCAGTTGTGTGTGTGCTGTCGTGAAGCTGTATGACCAACGACTGTG
TTCGTGCTGTATTTATTGAGACTGTTCTTAGCCGAATATATGTTCAGCCA
CTTTTTTTCTTCTTCGTGTTTTTTTTTTTTGTCCAGTTCGAGGGCACACG
TTGCTCCGTCTTCTTTTTTTTTTCCATCGCCAACCCCACCGGTAAATTTT
CAAGGTTGTCCGAACGCCGCTGCGCTCCTCTTACTGCCTCAGAGCATACT
TCCGCTGATTATGGTTATGTTACGTCGTTTGCGGGTGAGGAGACGTAGCA
TCAACACTACAATAAAACCAAAAGCTGCCAAACACGGCGGTTCGATTCTC
AACAAACGTGATGGTTTCAAAAATCTTGTTTTCACTTGTCCGTCAAATCA
AGTTAAGTTAAGCTTACCAACAAAACGAGTCACTATAGCATACATCATAT
CAATATGTTCGTTTGGAGCAACTGTTCGTCCTACTGGCGGAACCTGATCG
ACAATCGACCGCTAACCGCCGCTGGCGCTGCCACTGTCGCTACGCTCTGT
CTAGGCGTACGATTCGGAGCTGGTAGATGAGTCGGAATTGTTTGCCGTGG
CGAGAGAAGCGGCGGAGGTGTGCTATGCTGCTGAGGCGGTGAGAAATACA
GGGCGACAAGAGGTGCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAG
TGTTGGTGTATCTTTCACGTACGTTATTTACAGTGACCGGGGTTGATTTC
CTGCAGGCATTTTCTCGACATTCTCGGCTGCTTGGTATTACAGGGGTCTT
TCATCTACAAAATGGCAAACGGAGTGGAAATGGAGGTTGGGTGCACGTGA
AGAAATTTGATCTTCGTGCTATTTGTTGAATGCATCCAACCTAAGAGACG
TAAGGAAAAACACGGAAGGTTGCCTCAAAAGTACCGCCGTGTTTCAGTCC
AACCAATGCGTTTTGTGTTTCGCCGGTTTACATACAGCAGCTCATGATAT
TTGCGTGTTTTGTTTTTTTTCCCCTTCCCATGTCCTCCTGGTTCTTCAAC
CAGACGGAATAACTTAAATATGTATATATATATATATATATATTATACTC
ACACTCCACTTTTGTCTTGTCTTGATCCCGCCTGCCTCATCAAGGGCAGC
CTGTATCAGACGAGTTTTTTTATTCACTTACAGTAAATGTAGAACAAGGC
CTCATCTACAGGCTGTCGCCGAGGTTAAATTGCCCCCCCCACATCCGCAT
CCTAAGCTTCAACTCTAGCCCCGACTTCCAACTCTCTCTTTTCTAAGTAC
TCGCCTAATTGCCACGAACACGGCGATCGGCAGGTTGGCGACAACGATGG
CGACGGCGTCATGACCAGCAGCTGTAGCGGAGCCCGCGTGGCCGATCCTT
CCGGGCTGTCGTTGGTGTGCTCGGCCGTGATGATCGTCCTCACTTGGTCT
GATCAGGCAGACTTGTCCAGTAACTGGCAGCTTCGTCTTCTCGGGGTGAG
CGCGTAAGCGTAAAGGGGACGGACTTATACTGCAAGGCATACTCGATACT
ATGGAGAGGAGAGGGGATAATTAAGGGTTTAAATCGTTTTGGTAGAGAGG
AAGCGTAGATGTTTTACATATATATATATATATATATATTTATAAGTATT
CTATTTTTTCAAAAATATGTACAGAGTATAATCGGCTTTGTAATATGGCG
AACACTTTTTGTTTTCTCGTGTATAACTCGTTCGACGCGTGGCTAATGAC
AAATGGAGTGAGTGTTGTTGATTCACCTTGCGAAAAGTCATTAGTTTACC
ATATCAACCATGTCTTTTTGTTTTTCACTCTGCGAAATTGTGTCGTACGC
AGGAACGAACGTACGTGCAGTTAGTCAGTCGAACCTTTTTTTTTAAAGGA
CACTCATCGAGTATGTCGAAGACCATCCCTTCTACTTATTAACGTCCTTG
TACCGACATACAACAGTGTAGATAGCGTGTTGGTACAATAGCAAATATGC
CACTTGACAAATGGTATTCTCGTATGTATGTTATCGTCGTTTTTATGGGG
TTGATTCACATAACTGGGTACCCCAGTCTACGTGGGAGCACAATTTCTCG
GGAAAGCGTCACTGCACGAAGACTTCACTCCCATCTTCTGCAACAGAAAA
ACGTATGAGGTCGTCCCTCGGTGTTATCTTTCGGCTGTGGCAGAAACTCG
TGTCCAGTTCTAAGTTGAAACAATTCGTCCCATCGTGGAGAATAAATACG
GAGATCTGGGGACTAAGTGACCGTGCTGCGATATGGGTTATCGCAGGCCT
CCTCTGTTCAACGGAGAGACGAGAAGAGACCTTGACACCCAATCAACGAG
ACTATCGATCATTCGCTGAGCGCTGCTGATCATCCGTGCAACGATTGACC
ATCGCATTCCGACACTATCGATGGATCATGAACGACCAAGCGTGAGTGAC
ACTTTACCTGCCAATGTCTGCACCATTAGGATTCGCATGATCGCATGCAT
AACTTGTTAATCGAACTAAGGCCTGCTTGAAACAACGAGAACGGTAGGTG
ATGCCAGTGCCGGGAAGCCACCCCGTGGGCATAACCCATGCCATTCCCTC
ACAATATGGGTGATTTGTTTCGTCGAAGTACCCCCCCTTACACGCTGAAC
TACGCATCCCTGAGTCCTTTCAGCGAATGGCTTCGACGCCCTTTTCACCC
GGTACGCTTGTGCCTCCTGGTCATCAAGAGTCGTTGTTGAGTTCAACTTA
TATAATGCTATACGGAGTATTAATTAAGTAGATATATCATAACTGGAAGT
GAAGTATCTCAGTACGTTCATGATCAATCAGCCGAGAAATTTAGTTAGTG
TTGGTGGCATGACCTACGCAGGCTATCCAGCAGGGCTTGGTAGCCCGTGA
ACCCCGCCGACTGGTCCTTCCCTCCGCTGGCGGAGGTGCGGTTACACCGG
GAGCTAAGGCGGCGGCGGCGTCTGCGGAAAAGGCGGAGCGCAGATGCCTG
GCACGGCTCACAGAGGTGGTGTTCAAGAACAAGCTGTTGCTGGAAGGCAA
AAAGCAGAGGTGAAGCTATTTCTTGCGAGCGTCAGAAACTTGAGTTTTTA
TACCATCGGATTCCTCTTTCACTAGCTGATTTGTACTGGAAAAGTCCAAA
ATCAAGTTTCCGAGGCAAGACCCCGTCGTATACATGAAACGGCCTGATTG
TGCTTGAATTTTTCTGTGATGAGGTTTTGGAGGAAGTGGCGTGGGGATAC
GTGCTGTAGACGTTTTTGTCGTCCATGCTTCGTAGTAGTAGGAGTACAGA
ATGTCAAAAGTGTTCCAAACCCGTTCGCATTTGTTTGCATTTCAGGTGTT
CGTAGTCCCCTCCCCTCCGACTATTCCAATCCCATGGTTACCGATGCCGT
CCGTCGCTGTACTCATCTCCCCAGCCTTCGTACCCGTCGCGCCGGATATT
TTTGCTACAGTATATGTCCTTGTATACAATATATCAGCTGCATATCACAT
GGAACATCATAGAAAACACAACGCACGCTATTCCTGTATCATTCGCAGCC
CTTGTCCTGTATCATTCGCAGCCCTTGTCCTGTATCATTTCATATCTCTA
ATACATATACCAAGACACGATAAATAAACGAAACGAAGCGACACGCGCTT
TGCGTTTTGTTTCGTTTGTGTATTTGTATGAATTTATGGGCAGCCGACTG
GTTCGTGCGGCGCATCTATCGGCCGCGCAAGCGCTCTTCGACGCCGACCC
CGACGGTGCCGTGAAAGACCTCTTCGCGTCGCGCGTTTTCGAGGCCCTGA
AAGACCCCGATGCCATGATCAGGGTGGCTGCGGGCGGCGCGACACGGGTG
TTATTCCGCCGCTTCCAACCCGAGAGGCACGAAAACATCTTCAACACGAT
GCTGGCCAAGCTGCCGCCCGTCGTGGAGGTGGACCAAAAACAGGAGGGCG
ATGGTGGTGAAGGAGGTGGAGGTGGTGATAGGGTTACTGCGTCTGAACTG
GCGTACGCGAAGCTTGCTGCTGGGTTGCGTTTCACGGACAACAAGATTGG
GTGAGCAAACAAAGGGAGCGGGTTGGTCGGAGGGGCGAGGGAGGCCATCT
ATTTACCTGTTGCCACGCTGAGGTCATGGTCCTTGACTGAAATCTAACGC
TGCGTATATGTATCCATTATGTAGAACGATGAAGGGGCGTCTATATATCA
GAGAGTATAGCGGTATCCATCGAACCGTCGAAGCCGATAGGATGTATTGA
GCGTCGCTTATCCGTAGGTGTTGGAGGTGAAAGATTGAAAAATATAAACA
CGGAATGAATTATAGGACGATAGAAATGAATAAGGGGTCAACTTTCGATC
AATGGGCACGTTGGCTTACAGGTTGATGTATCCGCGAACCTAGCAATATT
GTGGGAAATCCGTTTGTTCTAGGCCGTAAAGGTCATAAGCAAGGGTTCGT
AAGAACGGCCTGGTTTGAGCAGATGCTCGTACAACGTTTAGCAGGTGTTT
TTGCAAAATCGGCAGATGTTCCAGAATTTGTCCTGCCCTATGTGTGAAAT
ATTGAAAGCTGCGAAACTACCTACGTCGTACCACGCCGAAAACTTGGCCG
GTCATGAACTTCCAACCCTTTGTCCCACGTGCGCGGCATACCCCTCCCAA
GCTCGTATTTTTGAAGCTCGTTTTTTATGCACAAAACACTCCTTGTACGA
CGTGCGTGGTTTTTACGCCGCTGCCGGTGACAAGGTACTACGTGATAGCC
CGCCGTGAATTCGAGGCTACGTCCCTGGGGGTCGTCAAGGACATGGCCGC
GTCTAGTGCGAGGGTAATCCGGGTGGCCCTTGACCATTTGCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1452:20737..25928+

>mRNA_H-paniculata_contig1452.2708.1 ID=mRNA_H-paniculata_contig1452.2708.1|Name=mRNA_H-paniculata_contig1452.2708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at H-paniculata_contig1452:20737..25928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTATTCGGGGAGGGCAGTAACCCCGGCGGGGCGTTGAAGGGGGCTAT
TGTGTGGTGCGCGCGGCTTTCCATGGCCATTAGCCAGGACCCCGCGACCG
CGCGGCGCTTGGCTCAGTATTTTGAGAAGGGGGTATTCGGGGAGGGCAGT
AACCCCGGCGGGGCGTTGAAGGGGGCTATTGTGTGGTGCGCGCGGCTTTC
CATGGCCATTAGCCAGGACCCCGCGACCGCGCGGCGCTTGGCTCAGTATT
TTGAGAAGGCGTACGATTCGGAGCTGGTAGATGAGTCGGAATTGTTTGCC
GTGGCGAGAGAAGCGGCGGAGGTGTGCTATGCTGCTGAGGCGGCGTACGA
TTCGGAGCTGGTAGATGAGTCGGAATTGTTTGCCGTGGCGAGAGAAGCGG
CGGAGGTGTGCTATGCTGCTGAGGCGGTTGGCGACAACGATGGCGACGGC
GTCATGACCAGCAGCTGTAGCGGAGCCCGCGTGGCCGATCCTTCCGGGCT
GTCGTTGGTGTGCTCGGCCGTGATGATCGTCCTCACTTGGTCTGATCAGG
CAGACTTGTCCAGTAACTGGCAGCTTCGTCTTCTCGGGGTTGGCGACAAC
GATGGCGACGGCGTCATGACCAGCAGCTGTAGCGGAGCCCGCGTGGCCGA
TCCTTCCGGGCTGTCGTTGGTGTGCTCGGCCGTGATGATCGTCCTCACTT
GGTCTGATCAGGCAGACTTGTCCAGTAACTGGCAGCTTCGTCTTCTCGGG
GCTATCCAGCAGGGCTTGGTAGCCCGTGAACCCCGCCGACTGGTCCTTCC
CTCCGCTGGCGGAGGTGCGGTTACACCGGGAGCTAAGGCGGCGGCGGCGT
CTGCGGAAAAGGCGGAGCGCAGATGCCTGGCACGGCTCACAGAGGTGGTG
TTCAAGAACAAGCTGTTGCTGGAAGGCAAAAAGCAGAGGCTATCCAGCAG
GGCTTGGTAGCCCGTGAACCCCGCCGACTGGTCCTTCCCTCCGCTGGCGG
AGGTGCGGTTACACCGGGAGCTAAGGCGGCGGCGGCGTCTGCGGAAAAGG
CGGAGCGCAGATGCCTGGCACGGCTCACAGAGGTGGTGTTCAAGAACAAG
CTGTTGCTGGAAGGCAAAAAGCAGAGCCGACTGGTTCGTGCGGCGCATCT
ATCGGCCGCGCAAGCGCTCTTCGACGCCGACCCCGACGGTGCCGTGAAAG
ACCTCTTCGCGTCGCGCGTTTTCGAGGCCCTGAAAGACCCCGATGCCATG
ATCAGGGTGGCTGCGGGCGGCGCGACACGGGTGTTATTCCGCCGCTTCCA
ACCCGAGAGGCACGAAAACATCTTCAACACGATGCTGGCCAAGCTGCCGC
CCGTCGTGGAGGTGGACCAAAAACAGGAGGGCGATGGTGGTGAAGGAGGT
GGAGGTGGTGATAGGGTTACTGCGTCTGAACTGGCGTACGCGAAGCTTGC
TGCTGGGTTGCGTTTCACGGACAACAAGATTGGCCGACTGGTTCGTGCGG
CGCATCTATCGGCCGCGCAAGCGCTCTTCGACGCCGACCCCGACGGTGCC
GTGAAAGACCTCTTCGCGTCGCGCGTTTTCGAGGCCCTGAAAGACCCCGA
TGCCATGATCAGGGTGGCTGCGGGCGGCGCGACACGGGTGTTATTCCGCC
GCTTCCAACCCGAGAGGCACGAAAACATCTTCAACACGATGCTGGCCAAG
CTGCCGCCCGTCGTGGAGGTGGACCAAAAACAGGAGGGCGATGGTGGTGA
AGGAGGTGGAGGTGGTGATAGGGTTACTGCGTCTGAACTGGCGTACGCGA
AGCTTGCTGCTGGGTTGCGTTTCACGGACAACAAGATTGGGTACTACGTG
ATAGCCCGCCGTGAATTCGAGGCTACGTCCCTGGGGGTCGTCAAGGACAT
GGCCGCGTCTAGTGCGAGGGTAATCCGGGTGGCCCTTGACCATTTGGTAC
TACGTGATAGCCCGCCGTGAATTCGAGGCTACGTCCCTGGGGGTCGTCAA
GGACATGGCCGCGTCTAGTGCGAGGGTAATCCGGGTGGCCCTTGACCATT
TG
back to top